Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06520

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,355,303	+		DZA65_RS06510	0.11	-2.2
1,355,303	+		DZA65_RS06510	0.11	-1.5
1,355,303	+		DZA65_RS06510	0.11	-0.7
1,355,487	+				-1.1
1,355,487	+				-0.5
1,355,487	+				-0.5
1,355,488	-				+0.5
1,355,531	+				+0.4
1,355,531	+				+0.1
1,355,531	+				-1.5
1,355,532	-				+0.9
1,355,563	+				+3.3
1,355,665	+		DZA65_RS06515	0.30	-0.5
1,355,774	+		DZA65_RS06515	0.58	-0.4
1,355,774	+		DZA65_RS06515	0.58	+0.1
1,355,774	+		DZA65_RS06515	0.58	+0.7
1,355,774	+		DZA65_RS06515	0.58	+1.7
1,355,775	-		DZA65_RS06515	0.58	-1.1
1,355,793	+		DZA65_RS06515	0.63	-0.0
1,355,793	+		DZA65_RS06515	0.63	-0.5
1,355,853	+		DZA65_RS06515	0.79	+1.9
1,355,854	-		DZA65_RS06515	0.79	+0.9
1,355,856	+		DZA65_RS06515	0.79	+0.2
1,355,857	-		DZA65_RS06515	0.80	-0.5
1,355,857	-		DZA65_RS06515	0.80	+1.4
1,355,857	-		DZA65_RS06515	0.80	-0.5
1,355,920	+				+0.5
1,355,920	+				+0.3
1,355,921	-				-0.9
1,355,925	+				+1.3
1,355,925	+				-1.5
1,355,925	+				+0.1
1,355,926	-				-0.5
1,355,926	-				+0.9
1,355,926	-				-0.1
1,355,926	-				+1.2
1,355,926	-				-0.3
1,355,926	-				-1.0
1,355,926	-				-0.0
1,355,928	+				-0.6
1,355,928	+				+0.8
1,355,928	+				-0.9
1,355,929	-				+1.2
1,355,929	-				+0.0
1,355,929	-				-0.7
1,355,929	-				+0.3
1,355,930	+				-0.6
1,355,930	+				-0.9
1,355,930	+				-0.2
1,355,930	+				+1.8
1,355,930	+				-0.8
1,355,930	+				-0.0
1,355,930	+				+0.2
1,355,930	+				-1.0
1,355,930	+				-0.0
1,355,930	+				+2.1
1,355,930	+				-0.3
1,355,931	-				-1.3
1,355,931	-				-1.0
1,355,931	-				-0.5
1,355,931	-				-0.6
1,355,931	-				+0.0
1,355,931	-				-0.1
1,355,931	-				-1.0
1,355,931	-				-0.2
1,355,931	-				-0.2
1,355,931	-				-1.4
1,355,931	-				-1.3
1,355,931	-				-0.2
1,355,931	-				-0.5
1,355,931	-				-0.2
1,355,931	-				+0.0
1,355,931	-				+0.2
1,355,934	+				-1.2
1,355,934	+				-0.3
1,355,934	+				+3.1
1,355,934	+				-1.8
1,355,934	+				-0.3
1,355,934	+				-0.8
1,355,934	+				-0.8
1,355,934	+				+1.6
1,355,934	+				+0.9
1,355,934	+				+0.7
1,355,934	+				+1.7
1,355,934	+				+0.7
1,355,934	+				+0.5
1,355,934	+				-1.3
1,355,934	+				-0.8
1,355,935	-				-0.4
1,355,935	-				-0.5
1,355,935	-				+0.5
1,355,935	-				-3.0
1,355,935	-				-1.4
1,355,935	-				-1.5
1,355,935	-				+0.0
1,355,935	-				-1.1
1,355,935	-				+1.0
1,355,938	+				+1.5
1,355,939	-				-0.0
1,356,060	-				+1.0
1,356,089	+				-0.2
1,356,089	+				+0.5
1,356,113	+				+0.5
1,356,114	-				-1.1
1,356,124	+				+1.1
1,356,124	+				+0.6
1,356,124	+				-0.9
1,356,124	+				+0.3
1,356,124	+				-0.5
1,356,125	-				-0.0
1,356,125	-				-1.5
1,356,125	-				-1.1
1,356,125	-				+0.3
1,356,125	-				-1.1
1,356,128	+				-1.2
1,356,128	+				-0.3
1,356,128	+				+0.1
1,356,128	+				+1.4
1,356,128	+				+1.7
1,356,129	-				-0.1
1,356,129	-				+0.4
1,356,129	-				-0.4
1,356,129	-				+1.1
1,356,129	-				+1.0
1,356,143	+				-0.2
1,356,144	-				+0.0
1,356,144	-				+0.4
1,356,208	+				-0.8
1,356,208	+				+0.0
1,356,208	+				+1.5
1,356,208	+				+1.5
1,356,214	+				-0.7
1,356,214	+				+1.2
1,356,215	-				-0.5
1,356,285	-		DZA65_RS06520	0.18	-0.0
1,356,285	-		DZA65_RS06520	0.18	-0.5
1,356,386	+		DZA65_RS06520	0.31	+0.0
1,356,395	+		DZA65_RS06520	0.32	-1.1
1,356,395	+		DZA65_RS06520	0.32	-0.7
1,356,395	+		DZA65_RS06520	0.32	+0.8
1,356,395	+		DZA65_RS06520	0.32	+0.6
1,356,396	-		DZA65_RS06520	0.32	+1.0
1,356,396	-		DZA65_RS06520	0.32	-0.8
1,356,396	-		DZA65_RS06520	0.32	-0.1
1,356,418	+		DZA65_RS06520	0.35	-1.4
1,356,418	+		DZA65_RS06520	0.35	-0.9
1,356,419	-		DZA65_RS06520	0.35	-0.5
1,356,422	+		DZA65_RS06520	0.35	+0.1
1,356,422	+		DZA65_RS06520	0.35	-0.5
1,356,422	+		DZA65_RS06520	0.35	-2.1
1,356,422	+		DZA65_RS06520	0.35	+0.6
1,356,422	+		DZA65_RS06520	0.35	-0.5
1,356,422	+		DZA65_RS06520	0.35	-1.2
1,356,423	-		DZA65_RS06520	0.35	+0.8
1,356,423	-		DZA65_RS06520	0.35	+0.5
1,356,423	-		DZA65_RS06520	0.35	+0.8
1,356,423	-		DZA65_RS06520	0.35	+0.5
1,356,423	-		DZA65_RS06520	0.35	+0.9
1,356,423	-		DZA65_RS06520	0.35	-1.4
1,356,423	-				+1.1
1,356,425	+		DZA65_RS06520	0.36	+0.2
1,356,425	+		DZA65_RS06520	0.36	-1.0
1,356,425	+		DZA65_RS06520	0.36	-0.4
1,356,425	+		DZA65_RS06520	0.36	+0.5
1,356,425	+		DZA65_RS06520	0.36	-0.7
1,356,425	+		DZA65_RS06520	0.36	-1.5
1,356,425	+		DZA65_RS06520	0.36	+1.8
1,356,425	+		DZA65_RS06520	0.36	+0.5
1,356,425	+		DZA65_RS06520	0.36	-0.3
1,356,425	+		DZA65_RS06520	0.36	+0.5
1,356,425	+		DZA65_RS06520	0.36	-0.2
1,356,425	+		DZA65_RS06520	0.36	-0.3
1,356,425	+		DZA65_RS06520	0.36	-1.8
1,356,425	+		DZA65_RS06520	0.36	+1.2
1,356,425	+		DZA65_RS06520	0.36	-0.9
1,356,426	-		DZA65_RS06520	0.36	+2.1
1,356,426	-		DZA65_RS06520	0.36	+1.5
1,356,426	-		DZA65_RS06520	0.36	-1.4
1,356,426	-		DZA65_RS06520	0.36	+1.3
1,356,426	-		DZA65_RS06520	0.36	+0.7
1,356,426	-		DZA65_RS06520	0.36	-1.0
1,356,426	-		DZA65_RS06520	0.36	-0.2
1,356,426	-		DZA65_RS06520	0.36	-1.3
1,356,426	-		DZA65_RS06520	0.36	+0.1
1,356,426	-		DZA65_RS06520	0.36	+1.2
1,356,426	-		DZA65_RS06520	0.36	+0.2
1,356,426	-		DZA65_RS06520	0.36	+1.4
1,356,426	-		DZA65_RS06520	0.36	+0.1
1,356,426	-		DZA65_RS06520	0.36	+0.2
1,356,483	+		DZA65_RS06520	0.43	-0.8
1,356,483	+		DZA65_RS06520	0.43	+0.5
1,356,483	+		DZA65_RS06520	0.43	+0.5
1,356,483	+		DZA65_RS06520	0.43	-1.4
1,356,483	+		DZA65_RS06520	0.43	+0.9
1,356,483	+		DZA65_RS06520	0.43	+0.2
1,356,484	-		DZA65_RS06520	0.43	+0.9
1,356,484	-		DZA65_RS06520	0.43	+0.9
1,356,484	-		DZA65_RS06520	0.43	+1.2
1,356,484	-		DZA65_RS06520	0.43	+0.4
1,356,484	-				-0.5
1,356,484	-		DZA65_RS06520	0.43	+0.8
1,356,484	-		DZA65_RS06520	0.43	-1.5
1,356,484	-		DZA65_RS06520	0.43	+0.4
1,356,484	-		DZA65_RS06520	0.43	+0.3
1,356,494	+		DZA65_RS06520	0.44	+0.4
1,356,495	-		DZA65_RS06520	0.44	-0.2
1,356,586	-		DZA65_RS06520	0.56	+0.8
1,356,732	+		DZA65_RS06520	0.75	+1.7
1,356,733	-		DZA65_RS06520	0.75	+0.2
1,356,733	-		DZA65_RS06520	0.75	-0.1
1,356,777	-		DZA65_RS06520	0.80	-0.1
1,356,835	+		DZA65_RS06520	0.88	-0.9
1,356,835	+		DZA65_RS06520	0.88	-1.2
1,356,836	-		DZA65_RS06520	0.88	+0.5
1,356,836	-		DZA65_RS06520	0.88	-2.0
1,356,886	+				+0.1
1,356,886	+				+1.8
1,356,886	+				-1.3
1,356,886	+				+0.2
1,356,887	-				+0.3
1,356,887	-				+0.5
1,356,895	+				+0.9
1,356,895	+				-1.2
1,356,895	+				+0.2
1,356,895	+				-0.7
1,356,895	+				+0.7
1,356,896	-				+0.5
1,356,896	-				+0.1
1,356,896	-				-0.3
1,356,896	-				+1.4
1,356,896	-				+0.4
1,356,896	-				-0.1
1,356,896	-				+0.1
1,356,922	+				-0.7
1,356,922	+				+0.7
1,356,923	-				+0.1
1,356,923	-				-2.6
1,356,923	-				+0.0
1,356,925	+				-0.6
1,356,925	+				-0.1
1,356,925	+				-0.3
1,356,925	+				-0.1
1,356,926	-				+0.7
1,356,926	-				+0.1
1,356,930	+				-0.5
1,356,984	-				-0.4
1,356,984	-				+0.2
1,356,984	-				-0.1
1,356,984	-				+3.2
1,356,991	+				+0.9
1,357,016	+				+2.1
1,357,016	+				-0.1
1,357,019	-				-0.1
1,357,041	+				-0.9
1,357,041	+				+0.0
1,357,041	+				+1.9
1,357,042	-				-0.5
1,357,042	-				-0.8
1,357,077	+				+0.8
1,357,077	+				-0.9
1,357,077	+				+0.5
1,357,077	+				-0.5
1,357,077	+				+0.5
1,357,077	+				+0.4
1,357,077	+				-0.9
1,357,078	-				-0.8
1,357,078	-				-0.0
1,357,078	-				-1.3
1,357,078	-				+0.2
1,357,081	+				+0.9
1,357,081	+				-0.4
1,357,081	+				-0.9
1,357,081	+				+0.2
1,357,081	+				+0.3
1,357,081	+				+0.5
1,357,081	+				+0.0
1,357,081	+				-0.2
1,357,081	+				+2.0
1,357,081	+				+0.9
1,357,081	+				-1.8
1,357,082	-				-1.1
1,357,082	-				+1.4
1,357,082	-				-1.2
1,357,082	-				-0.3
1,357,082	-				-0.1
1,357,082	-				+0.3
1,357,082	-				-0.5
1,357,085	+				+0.3
1,357,085	+				+0.1
1,357,085	+				-0.3
1,357,085	+				-0.4
1,357,085	+				-0.7
1,357,085	+				+0.3
1,357,085	+				-0.3
1,357,085	+				+1.5
1,357,085	+				+1.1
1,357,085	+				+0.6
1,357,085	+				-0.8
1,357,085	+				+0.5
1,357,085	+				-2.7
1,357,086	-				+0.7
1,357,086	-				+2.2
1,357,086	-				-0.2
1,357,086	-				+0.8
1,357,086	-				-0.1
1,357,086	-				-0.1
1,357,086	-				-0.9
1,357,086	-				-0.4
1,357,086	-				-0.3
1,357,086	-				+1.5
1,357,086	-				-0.6
1,357,086	-				-0.5
1,357,086	-				+2.1
1,357,086	-				-0.6
1,357,095	-				+0.5
1,357,100	+				-1.8
1,357,100	+				-2.3
1,357,100	+				+0.5
1,357,101	-				+0.5
1,357,114	+		DZA65_RS06525	0.12	+0.1
1,357,114	+		DZA65_RS06525	0.12	-0.8
1,357,154	+		DZA65_RS06525	0.28	-0.2
1,357,159	+		DZA65_RS06525	0.30	+0.3
1,357,159	+		DZA65_RS06525	0.30	+0.5
1,357,159	+		DZA65_RS06525	0.30	-0.3
1,357,159	+		DZA65_RS06525	0.30	-0.9
1,357,159	+		DZA65_RS06525	0.30	-0.7
1,357,159	+		DZA65_RS06525	0.30	+0.5
1,357,159	+		DZA65_RS06525	0.30	+0.8
1,357,159	+		DZA65_RS06525	0.30	-0.7
1,357,159	+		DZA65_RS06525	0.30	-0.2
1,357,159	+		DZA65_RS06525	0.30	+0.4
1,357,160	-		DZA65_RS06525	0.30	+0.9
1,357,160	-		DZA65_RS06525	0.30	-1.1
1,357,160	-		DZA65_RS06525	0.30	+0.3
1,357,160	-		DZA65_RS06525	0.30	+1.5
1,357,163	+		DZA65_RS06525	0.32	+0.5
1,357,163	+		DZA65_RS06525	0.32	+1.0
1,357,163	+		DZA65_RS06525	0.32	-0.5
1,357,163	+		DZA65_RS06525	0.32	-1.1
1,357,163	+		DZA65_RS06525	0.32	+0.8
1,357,164	-		DZA65_RS06525	0.32	-0.4
1,357,164	-		DZA65_RS06525	0.32	-0.2
1,357,164	-		DZA65_RS06525	0.32	+0.4
1,357,164	-		DZA65_RS06525	0.32	+1.1
1,357,428	+				-0.2