Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06390

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,330,904	+		DZA65_RS06385	0.18	-0.7
1,330,905	-		DZA65_RS06385	0.18	+0.8
1,330,993	-		DZA65_RS06385	0.29	-1.0
1,331,111	+		DZA65_RS06385	0.44	+0.3
1,331,111	+		DZA65_RS06385	0.44	-1.1
1,331,111	+		DZA65_RS06385	0.44	-0.2
1,331,111	+		DZA65_RS06385	0.44	+0.0
1,331,112	-		DZA65_RS06385	0.44	+0.2
1,331,112	-		DZA65_RS06385	0.44	+0.7
1,331,112	-		DZA65_RS06385	0.44	+0.1
1,331,112	-		DZA65_RS06385	0.44	+0.2
1,331,193	+		DZA65_RS06385	0.54	-2.8
1,331,222	+		DZA65_RS06385	0.57	-0.7
1,331,222	+		DZA65_RS06385	0.57	+1.7
1,331,222	+		DZA65_RS06385	0.57	-0.2
1,331,222	+		DZA65_RS06385	0.57	-2.5
1,331,223	-		DZA65_RS06385	0.57	+1.0
1,331,223	-		DZA65_RS06385	0.57	+0.4
1,331,223	-		DZA65_RS06385	0.57	+1.0
1,331,223	-		DZA65_RS06385	0.57	+1.2
1,331,223	-		DZA65_RS06385	0.57	-2.1
1,331,223	-		DZA65_RS06385	0.57	-0.3
1,331,223	-		DZA65_RS06385	0.57	-1.7
1,331,223	-		DZA65_RS06385	0.57	-0.8
1,331,223	-		DZA65_RS06385	0.57	+0.0
1,331,225	+		DZA65_RS06385	0.57	+1.5
1,331,225	+		DZA65_RS06385	0.57	-0.2
1,331,225	+		DZA65_RS06385	0.57	+1.3
1,331,225	+		DZA65_RS06385	0.57	+1.7
1,331,226	-		DZA65_RS06385	0.58	-0.4
1,331,226	-		DZA65_RS06385	0.58	-0.2
1,331,226	-		DZA65_RS06385	0.58	+0.1
1,331,226	-		DZA65_RS06385	0.58	-0.2
1,331,429	+		DZA65_RS06385	0.82	+0.7
1,331,430	-		DZA65_RS06385	0.82	+0.5
1,331,430	-		DZA65_RS06385	0.82	+2.0
1,331,430	-		DZA65_RS06385	0.82	-0.5
1,331,430	-		DZA65_RS06385	0.82	-0.1
1,331,445	-		DZA65_RS06385	0.84	+0.1
1,331,471	-		DZA65_RS06385	0.87	+0.5
1,331,471	-		DZA65_RS06385	0.87	+0.3
1,331,471	-		DZA65_RS06385	0.87	+0.9
1,331,526	+				+0.1
1,331,526	+				+0.2
1,331,526	+				+1.1
1,331,526	+				-0.1
1,331,527	-				-0.2
1,331,586	-				+2.0
1,331,592	+				+1.1
1,331,592	+				+1.2
1,331,593	-				-0.6
1,331,593	-				-0.5
1,331,593	-				-0.9
1,331,661	+				-2.3
1,331,661	+				-0.3
1,331,661	+				+0.5
1,331,662	-				+1.0
1,331,662	-				+0.1
1,331,662	-				-0.4
1,331,662	-				+0.8
1,331,662	-				+0.2
1,331,662	-				+0.8
1,331,662	-				-0.5
1,331,663	+				+0.3
1,331,663	+				+0.5
1,331,663	+				+0.8
1,331,663	+				+1.2
1,331,663	+				-0.8
1,331,663	+				+0.3
1,331,664	-				-0.2
1,331,664	-				-0.8
1,331,664	-				-2.9
1,331,664	-				-0.3
1,331,687	+				+0.2
1,331,687	+				-1.5
1,331,687	+				+1.5
1,331,687	+				+0.2
1,331,722	-				+1.2
1,331,722	-				+0.5
1,331,722	-				-2.1
1,331,722	-				-0.7
1,331,764	-				-0.3
1,331,764	-				+1.0
1,331,765	+				+0.3
1,331,765	+				+1.1
1,331,808	+				+1.5
1,331,808	+				+0.3
1,331,809	-				-0.9
1,331,809	-				-0.1
1,331,809	-				+1.4
1,331,809	-				-0.5
1,331,835	+				-0.2
1,331,889	+				-0.4
1,331,889	+				+2.8
1,331,889	+				-0.1
1,331,889	+				+1.2
1,331,889	+				+0.6
1,331,890	-				+0.7
1,331,890	-				+0.9
1,331,890	-				+0.5
1,331,890	-				-1.3
1,331,890	-				-1.5
1,331,890	-				-1.9
1,331,916	+				-0.3
1,331,916	+				-0.2
1,331,916	+				+0.0
1,331,916	+				+1.7
1,331,916	+				-1.1
1,331,916	+				-0.5
1,331,916	+				-0.6
1,331,917	-				+0.3
1,331,917	-				-0.2
1,331,917	-				+1.5
1,331,928	+		DZA65_RS06390	0.11	+0.9
1,331,929	-		DZA65_RS06390	0.11	+0.1
1,331,929	-		DZA65_RS06390	0.11	+0.5
1,332,039	+		DZA65_RS06390	0.22	-0.8
1,332,039	+		DZA65_RS06390	0.22	-0.3
1,332,040	-		DZA65_RS06390	0.22	-0.6
1,332,040	-		DZA65_RS06390	0.22	-0.2
1,332,040	-		DZA65_RS06390	0.22	+0.8
1,332,040	-		DZA65_RS06390	0.22	+1.5
1,332,043	+		DZA65_RS06390	0.22	-0.7
1,332,043	+		DZA65_RS06390	0.22	-2.3
1,332,043	+		DZA65_RS06390	0.22	+0.2
1,332,043	+		DZA65_RS06390	0.22	-0.1
1,332,043	+		DZA65_RS06390	0.22	-1.1
1,332,043	+		DZA65_RS06390	0.22	+0.2
1,332,044	-		DZA65_RS06390	0.22	-0.2
1,332,044	-		DZA65_RS06390	0.22	-0.2
1,332,044	-		DZA65_RS06390	0.22	+1.5
1,332,044	-		DZA65_RS06390	0.22	+0.7
1,332,105	+		DZA65_RS06390	0.28	+0.9
1,332,105	+		DZA65_RS06390	0.28	+1.0
1,332,105	+		DZA65_RS06390	0.28	-0.8
1,332,106	-		DZA65_RS06390	0.28	-0.2
1,332,106	-		DZA65_RS06390	0.28	-0.4
1,332,106	-		DZA65_RS06390	0.28	-0.7
1,332,106	-		DZA65_RS06390	0.28	+0.4
1,332,106	-		DZA65_RS06390	0.28	+0.1
1,332,106	-		DZA65_RS06390	0.28	-0.6
1,332,126	+		DZA65_RS06390	0.30	+0.8
1,332,126	+		DZA65_RS06390	0.30	+0.2
1,332,126	+		DZA65_RS06390	0.30	-0.9
1,332,126	+		DZA65_RS06390	0.30	-1.1
1,332,126	+		DZA65_RS06390	0.30	-0.7
1,332,126	+		DZA65_RS06390	0.30	+0.0
1,332,127	-		DZA65_RS06390	0.30	+0.3
1,332,127	-		DZA65_RS06390	0.30	-0.3
1,332,127	-		DZA65_RS06390	0.30	+1.5
1,332,127	-		DZA65_RS06390	0.30	+0.8
1,332,127	-		DZA65_RS06390	0.30	-0.6
1,332,127	-		DZA65_RS06390	0.30	-0.3
1,332,127	-		DZA65_RS06390	0.30	-2.1
1,332,127	-		DZA65_RS06390	0.30	+0.5
1,332,127	-		DZA65_RS06390	0.30	+0.5
1,332,127	-		DZA65_RS06390	0.30	+0.2
1,332,127	-		DZA65_RS06390	0.30	+0.5
1,332,127	-		DZA65_RS06390	0.30	-0.3
1,332,149	+		DZA65_RS06390	0.33	+0.2
1,332,149	+		DZA65_RS06390	0.33	-1.1
1,332,149	+		DZA65_RS06390	0.33	-1.1
1,332,150	-		DZA65_RS06390	0.33	-1.2
1,332,155	+		DZA65_RS06390	0.33	+1.1
1,332,155	+		DZA65_RS06390	0.33	+0.1
1,332,155	+		DZA65_RS06390	0.33	+0.3
1,332,156	-		DZA65_RS06390	0.33	-1.2
1,332,156	-		DZA65_RS06390	0.33	-0.2
1,332,203	-		DZA65_RS06390	0.38	-0.5
1,332,264	+		DZA65_RS06390	0.44	+0.6
1,332,264	+		DZA65_RS06390	0.44	-0.9
1,332,264	+		DZA65_RS06390	0.44	-0.8
1,332,265	-		DZA65_RS06390	0.44	+1.1
1,332,265	-		DZA65_RS06390	0.44	+0.5
1,332,265	-		DZA65_RS06390	0.44	+1.1
1,332,265	-		DZA65_RS06390	0.44	+3.3
1,332,274	+		DZA65_RS06390	0.45	+0.5
1,332,275	-		DZA65_RS06390	0.45	+1.5
1,332,275	-		DZA65_RS06390	0.45	+0.0
1,332,276	+		DZA65_RS06390	0.45	-0.9
1,332,276	+		DZA65_RS06390	0.45	+1.9
1,332,276	+		DZA65_RS06390	0.45	+0.3
1,332,276	+		DZA65_RS06390	0.45	+0.9
1,332,276	+		DZA65_RS06390	0.45	-0.2
1,332,276	+		DZA65_RS06390	0.45	-1.1
1,332,276	+		DZA65_RS06390	0.45	-0.1
1,332,276	+		DZA65_RS06390	0.45	-0.1
1,332,276	+		DZA65_RS06390	0.45	+0.6
1,332,277	-		DZA65_RS06390	0.45	-1.7
1,332,277	-		DZA65_RS06390	0.45	-0.1
1,332,277	-		DZA65_RS06390	0.45	-1.4
1,332,277	-		DZA65_RS06390	0.45	+0.8
1,332,277	-		DZA65_RS06390	0.45	+0.2
1,332,277	-		DZA65_RS06390	0.45	+1.4
1,332,277	-		DZA65_RS06390	0.45	+0.5
1,332,277	-		DZA65_RS06390	0.45	-1.5
1,332,277	-		DZA65_RS06390	0.45	-0.9
1,332,277	-		DZA65_RS06390	0.45	-0.7
1,332,277	-		DZA65_RS06390	0.45	+0.5
1,332,372	+		DZA65_RS06390	0.55	-0.9
1,332,372	+		DZA65_RS06390	0.55	-0.4
1,332,372	+		DZA65_RS06390	0.55	-0.1
1,332,372	+		DZA65_RS06390	0.55	-0.2
1,332,373	-		DZA65_RS06390	0.55	+0.3
1,332,373	-		DZA65_RS06390	0.55	-0.2
1,332,373	-		DZA65_RS06390	0.55	-2.7
1,332,373	-		DZA65_RS06390	0.55	+0.3
1,332,373	-		DZA65_RS06390	0.55	+0.1
1,332,373	-				+1.1
1,332,373	-		DZA65_RS06390	0.55	+1.0
1,332,376	-		DZA65_RS06390	0.55	+1.5
1,332,376	-		DZA65_RS06390	0.55	-0.8
1,332,376	-		DZA65_RS06390	0.55	-1.1
1,332,376	-		DZA65_RS06390	0.55	+0.9
1,332,394	-				-0.2
1,332,394	-		DZA65_RS06390	0.57	-0.4
1,332,394	-		DZA65_RS06390	0.57	-0.5
1,332,394	-		DZA65_RS06390	0.57	-0.0
1,332,394	-		DZA65_RS06390	0.57	-1.8
1,332,570	-		DZA65_RS06390	0.74	+0.8
1,332,668	-		DZA65_RS06390	0.84	+0.4
1,332,719	-		DZA65_RS06390	0.89	-0.8
1,332,719	-		DZA65_RS06390	0.89	+0.3
1,332,739	+				-0.8
1,332,742	+				-0.4
1,332,742	+				-0.2
1,332,743	-				+0.8
1,332,743	-				+0.5
1,332,743	-				+0.1
1,332,743	-				-0.2
1,332,743	-				-1.2
1,332,745	+				-0.7
1,332,745	+				+0.9
1,332,745	+				+0.3
1,332,745	+				-0.2
1,332,745	+				+0.6
1,332,746	-				-1.8
1,332,746	-				+1.1
1,332,746	-				-0.8
1,332,746	-				-0.5
1,332,746	-				+0.1
1,332,746	-				+0.9
1,332,774	+				-0.6
1,332,775	-				+1.5
1,332,775	-				+1.2
1,332,820	+				+0.5
1,332,820	+				+0.1
1,332,820	+				+0.2
1,332,821	-				+0.4
1,332,821	-				-2.1
1,332,821	-				-0.3
1,332,832	+				-1.1
1,332,851	-				-0.5
1,332,858	+				+1.6
1,332,859	-				-0.2
1,332,867	+				+1.1
1,332,868	-				-0.5
1,332,929	+				-0.5
1,332,930	-				-0.1
1,333,033	+		DZA65_RS06395	0.12	+1.9
1,333,261	+		DZA65_RS06395	0.27	-0.5
1,333,261	+		DZA65_RS06395	0.27	-1.5
1,333,261	+		DZA65_RS06395	0.27	+0.7
1,333,261	+		DZA65_RS06395	0.27	-0.9
1,333,262	-		DZA65_RS06395	0.27	+0.7
1,333,262	-		DZA65_RS06395	0.27	+0.2
1,333,262	-		DZA65_RS06395	0.27	-1.3
1,333,312	+		DZA65_RS06395	0.30	-1.6
1,333,312	+		DZA65_RS06395	0.30	+0.6
1,333,312	+		DZA65_RS06395	0.30	+0.8
1,333,312	+		DZA65_RS06395	0.30	+0.6
1,333,312	+		DZA65_RS06395	0.30	-0.1
1,333,312	+		DZA65_RS06395	0.30	+1.0
1,333,312	+		DZA65_RS06395	0.30	-1.1
1,333,313	-		DZA65_RS06395	0.31	+0.4
1,333,313	-		DZA65_RS06395	0.31	+0.1
1,333,313	-		DZA65_RS06395	0.31	+0.8
1,333,313	-		DZA65_RS06395	0.31	-0.4
1,333,313	-		DZA65_RS06395	0.31	-0.2
1,333,313	-		DZA65_RS06395	0.31	+0.8
1,333,313	-		DZA65_RS06395	0.31	+2.3
1,333,313	-		DZA65_RS06395	0.31	+0.0
1,333,313	-		DZA65_RS06395	0.31	+0.5
1,333,313	-		DZA65_RS06395	0.31	+0.0
1,333,313	-		DZA65_RS06395	0.31	+1.2
1,333,379	+		DZA65_RS06395	0.35	+0.2
1,333,380	-		DZA65_RS06395	0.35	-1.0
1,333,416	-		DZA65_RS06395	0.37	+0.6
1,333,578	+		DZA65_RS06395	0.48	+1.1
1,333,578	+		DZA65_RS06395	0.48	-0.1
1,333,578	+		DZA65_RS06395	0.48	+0.9
1,333,579	-		DZA65_RS06395	0.48	+0.5
1,333,579	-		DZA65_RS06395	0.48	+0.1
1,333,579	-		DZA65_RS06395	0.48	-1.7
1,333,659	-		DZA65_RS06395	0.53	+1.1
1,333,707	+		DZA65_RS06395	0.56	-0.1
1,333,707	+		DZA65_RS06395	0.56	+2.8
1,333,708	-		DZA65_RS06395	0.56	+0.9
1,333,708	-		DZA65_RS06395	0.56	-0.8
1,333,725	+		DZA65_RS06395	0.58	-0.8
1,333,725	+		DZA65_RS06395	0.58	-1.1
1,333,725	+		DZA65_RS06395	0.58	-0.3
1,333,725	+		DZA65_RS06395	0.58	-0.2
1,333,725	+		DZA65_RS06395	0.58	-1.3
1,333,725	+		DZA65_RS06395	0.58	-0.8
1,333,725	+		DZA65_RS06395	0.58	+1.2
1,333,726	-		DZA65_RS06395	0.58	-0.8
1,333,726	-		DZA65_RS06395	0.58	-1.3
1,333,726	-		DZA65_RS06395	0.58	-0.1
1,333,726	-		DZA65_RS06395	0.58	+0.0
1,333,726	-		DZA65_RS06395	0.58	+1.3
1,333,726	-		DZA65_RS06395	0.58	+2.4
1,333,726	-		DZA65_RS06395	0.58	+1.2
1,333,726	-		DZA65_RS06395	0.58	+0.6
1,333,726	-		DZA65_RS06395	0.58	+0.5
1,333,726	-		DZA65_RS06395	0.58	+0.5
1,333,726	-		DZA65_RS06395	0.58	-1.6
1,333,726	-		DZA65_RS06395	0.58	+0.0
1,333,726	-		DZA65_RS06395	0.58	-1.1
1,333,726	-		DZA65_RS06395	0.58	-0.4
1,333,759	+		DZA65_RS06395	0.60	+0.6
1,333,759	+		DZA65_RS06395	0.60	-0.3
1,333,759	+		DZA65_RS06395	0.60	-1.4
1,333,759	+		DZA65_RS06395	0.60	+1.1
1,333,759	+		DZA65_RS06395	0.60	+0.2
1,333,759	+		DZA65_RS06395	0.60	-0.3
1,333,759	+		DZA65_RS06395	0.60	-0.7
1,333,759	+		DZA65_RS06395	0.60	-1.4
1,333,759	+		DZA65_RS06395	0.60	-2.3
1,333,760	-		DZA65_RS06395	0.60	+0.7
1,333,760	-		DZA65_RS06395	0.60	+0.1
1,333,760	-		DZA65_RS06395	0.60	-1.1
1,333,760	-		DZA65_RS06395	0.60	+1.5
1,333,760	-		DZA65_RS06395	0.60	-1.8
1,333,800	-		DZA65_RS06395	0.63	+1.1