Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06315

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,314,714	+				-0.9
1,314,750	-				-1.5
1,314,782	+				-1.1
1,314,783	-				+2.1
1,314,783	-				+0.1
1,314,783	-				+0.5
1,314,905	-		DZA65_RS06310	0.22	+0.7
1,315,007	+		DZA65_RS06310	0.33	-0.1
1,315,008	-		DZA65_RS06310	0.33	-1.1
1,315,042	+		DZA65_RS06310	0.36	+0.5
1,315,042	+		DZA65_RS06310	0.36	+2.1
1,315,043	-		DZA65_RS06310	0.36	-0.4
1,315,043	-		DZA65_RS06310	0.36	+0.0
1,315,084	+		DZA65_RS06310	0.41	-0.2
1,315,084	+		DZA65_RS06310	0.41	-0.8
1,315,085	-		DZA65_RS06310	0.41	-0.4
1,315,098	+		DZA65_RS06310	0.42	-1.5
1,315,098	+		DZA65_RS06310	0.42	-1.0
1,315,099	-		DZA65_RS06310	0.42	-0.9
1,315,099	-		DZA65_RS06310	0.42	+0.3
1,315,099	-		DZA65_RS06310	0.42	-0.3
1,315,099	-		DZA65_RS06310	0.42	+1.8
1,315,099	-		DZA65_RS06310	0.42	-0.9
1,315,123	+		DZA65_RS06310	0.45	-0.5
1,315,123	+		DZA65_RS06310	0.45	-2.9
1,315,123	+		DZA65_RS06310	0.45	-0.8
1,315,123	+		DZA65_RS06310	0.45	-0.1
1,315,124	-		DZA65_RS06310	0.45	+0.4
1,315,218	+		DZA65_RS06310	0.54	-1.4
1,315,218	+		DZA65_RS06310	0.54	-0.5
1,315,219	-		DZA65_RS06310	0.55	-1.2
1,315,219	-		DZA65_RS06310	0.55	-0.5
1,315,219	-		DZA65_RS06310	0.55	+2.1
1,315,219	-		DZA65_RS06310	0.55	+1.5
1,315,233	+		DZA65_RS06310	0.56	+0.3
1,315,385	+		DZA65_RS06310	0.72	+0.9
1,315,385	+		DZA65_RS06310	0.72	-2.5
1,315,386	-		DZA65_RS06310	0.72	-1.8
1,315,389	-		DZA65_RS06310	0.72	-0.5
1,315,389	-		DZA65_RS06310	0.72	-0.2
1,315,559	+		DZA65_RS06310	0.90	-0.3
1,315,559	+		DZA65_RS06310	0.90	-0.7
1,315,559	+		DZA65_RS06310	0.90	+1.2
1,315,560	-		DZA65_RS06310	0.90	-0.1
1,315,759	+				+1.1
1,315,759	+				+1.3
1,315,759	+				+1.3
1,315,760	-				-0.1
1,315,794	+		DZA65_RS06315	0.11	+0.7
1,315,840	+		DZA65_RS06315	0.14	+0.3
1,315,840	+		DZA65_RS06315	0.14	-0.2
1,315,840	+		DZA65_RS06315	0.14	-0.5
1,315,840	+		DZA65_RS06315	0.14	+0.8
1,315,841	-		DZA65_RS06315	0.14	-2.3
1,315,841	-		DZA65_RS06315	0.14	+1.5
1,315,853	+		DZA65_RS06315	0.15	-0.9
1,315,854	-		DZA65_RS06315	0.15	-0.6
1,315,884	+		DZA65_RS06315	0.17	-0.5
1,315,884	+				+0.8
1,315,973	+		DZA65_RS06315	0.24	-0.7
1,315,973	+		DZA65_RS06315	0.24	+1.1
1,315,973	+		DZA65_RS06315	0.24	+0.9
1,315,973	+		DZA65_RS06315	0.24	+0.3
1,315,973	+		DZA65_RS06315	0.24	-2.3
1,315,974	-		DZA65_RS06315	0.24	-0.5
1,315,974	-		DZA65_RS06315	0.24	-1.9
1,315,974	-		DZA65_RS06315	0.24	-0.6
1,315,974	-		DZA65_RS06315	0.24	+0.9
1,315,993	+		DZA65_RS06315	0.25	-1.5
1,315,993	+		DZA65_RS06315	0.25	+0.4
1,315,993	+		DZA65_RS06315	0.25	+0.5
1,315,993	+		DZA65_RS06315	0.25	+0.9
1,315,993	+		DZA65_RS06315	0.25	+0.0
1,315,994	-		DZA65_RS06315	0.25	-2.8
1,315,994	-		DZA65_RS06315	0.25	+0.8
1,316,110	+		DZA65_RS06315	0.34	-0.4
1,316,110	+		DZA65_RS06315	0.34	-1.5
1,316,302	+		DZA65_RS06315	0.48	+0.4
1,316,303	-		DZA65_RS06315	0.48	-0.9
1,316,544	+		DZA65_RS06315	0.65	-0.7
1,316,544	+		DZA65_RS06315	0.65	-0.1
1,316,626	+		DZA65_RS06315	0.71	+0.2
1,316,786	+		DZA65_RS06315	0.83	+3.1
1,316,786	+		DZA65_RS06315	0.83	-0.5
1,316,786	+		DZA65_RS06315	0.83	+0.7
1,316,786	+		DZA65_RS06315	0.83	-0.6
1,316,786	+		DZA65_RS06315	0.83	+0.5
1,316,786	+		DZA65_RS06315	0.83	-0.8
1,316,786	+		DZA65_RS06315	0.83	-0.4
1,316,786	+		DZA65_RS06315	0.83	-1.5
1,316,786	+		DZA65_RS06315	0.83	-0.1
1,316,786	+		DZA65_RS06315	0.83	-0.6
1,316,787	-		DZA65_RS06315	0.83	-0.3
1,316,787	-		DZA65_RS06315	0.83	-1.2
1,316,787	-		DZA65_RS06315	0.83	-1.8
1,316,787	-		DZA65_RS06315	0.83	+0.5
1,316,787	-		DZA65_RS06315	0.83	+0.5
1,316,787	-		DZA65_RS06315	0.83	+0.9
1,316,930	+				-0.5
1,316,931	-				-1.4
1,317,088	+				-0.3
1,317,088	+				+0.2
1,317,088	+				-0.7
1,317,088	+				+0.2
1,317,088	+				-0.5
1,317,089	-				-1.3
1,317,089	-				-1.5
1,317,089	-				+0.1
1,317,089	-				+0.5
1,317,089	-				+1.4
1,317,089	-				+0.9
1,317,089	-				+0.5
1,317,127	+				+1.3
1,317,127	+				+0.1
1,317,127	+				-0.2
1,317,128	-				+1.8
1,317,128	-				-0.4
1,317,131	+				-0.5
1,317,131	+				+0.5
1,317,131	+				-1.8
1,317,132	-				+0.8
1,317,132	-				-0.2
1,317,132	-				+0.0
1,317,158	+				+0.5
1,317,158	+				-2.3
1,317,171	-				-0.1
1,317,199	+				-2.5
1,317,199	+				-1.1
1,317,200	-				-0.5
1,317,200	-				+0.1
1,317,200	-				-0.3
1,317,216	+				+1.5
1,317,216	+				-0.8
1,317,217	-				+0.1
1,317,217	-				+0.3
1,317,218	+				+0.5
1,317,218	+				+0.8
1,317,218	+				-0.1
1,317,218	+				+2.5
1,317,218	+				+0.3
1,317,219	-				+1.0
1,317,219	-				+0.8
1,317,219	-				-1.8
1,317,219	-				-0.6
1,317,238	-				+0.4
1,317,291	+		DZA65_RS06320	0.12	-0.1
1,317,291	+		DZA65_RS06320	0.12	+0.4
1,317,292	-		DZA65_RS06320	0.13	+0.5
1,317,316	+		DZA65_RS06320	0.17	+0.7
1,317,369	+		DZA65_RS06320	0.27	-1.1
1,317,409	+		DZA65_RS06320	0.34	-0.2
1,317,410	-		DZA65_RS06320	0.34	+0.9
1,317,410	-		DZA65_RS06320	0.34	-0.1
1,317,410	-		DZA65_RS06320	0.34	-0.1
1,317,427	+		DZA65_RS06320	0.37	-1.8
1,317,427	+		DZA65_RS06320	0.37	+0.1
1,317,428	-		DZA65_RS06320	0.38	-1.1
1,317,428	-		DZA65_RS06320	0.38	-0.1
1,317,478	+		DZA65_RS06320	0.47	-0.8
1,317,479	-		DZA65_RS06320	0.47	+1.3
1,317,498	+		DZA65_RS06320	0.50	+0.2
1,317,498	+		DZA65_RS06320	0.50	-0.9
1,317,498	+		DZA65_RS06320	0.50	+0.5
1,317,499	-		DZA65_RS06320	0.51	-1.0
1,317,509	-		DZA65_RS06320	0.52	-1.2
1,317,509	-		DZA65_RS06320	0.52	+1.9
1,317,566	-		DZA65_RS06320	0.63	-0.7
1,317,577	+		DZA65_RS06320	0.65	-0.2
1,317,577	+		DZA65_RS06320	0.65	+0.6
1,317,577	+		DZA65_RS06320	0.65	-0.4
1,317,578	-		DZA65_RS06320	0.65	-0.1
1,317,578	-		DZA65_RS06320	0.65	+0.1
1,317,578	-		DZA65_RS06320	0.65	+0.6
1,317,578	-		DZA65_RS06320	0.65	+1.1
1,317,578	-		DZA65_RS06320	0.65	+0.5
1,317,580	+		DZA65_RS06320	0.65	-0.7
1,317,581	-		DZA65_RS06320	0.66	+0.0
1,317,616	+		DZA65_RS06320	0.72	-0.4
1,317,617	-		DZA65_RS06320	0.72	+0.2
1,317,617	-		DZA65_RS06320	0.72	+0.8
1,317,617	-		DZA65_RS06320	0.72	-1.5
1,317,617	-		DZA65_RS06320	0.72	+1.0
1,317,617	-		DZA65_RS06320	0.72	+1.5
1,317,685	+		DZA65_RS06320	0.85	-0.3
1,317,685	+		DZA65_RS06320	0.85	-0.7
1,317,685	+		DZA65_RS06320	0.85	+0.3
1,317,685	+		DZA65_RS06320	0.85	-0.0
1,317,685	+		DZA65_RS06320	0.85	+0.2
1,317,685	+		DZA65_RS06320	0.85	+2.5
1,317,685	+		DZA65_RS06320	0.85	-0.5
1,317,685	+		DZA65_RS06320	0.85	+0.4
1,317,686	-		DZA65_RS06320	0.85	+1.1
1,317,686	-		DZA65_RS06320	0.85	+0.5
1,317,686	-		DZA65_RS06320	0.85	+0.4
1,317,686	-		DZA65_RS06320	0.85	+1.1
1,317,687	+		DZA65_RS06320	0.85	+1.3
1,317,687	+		DZA65_RS06320	0.85	-1.1
1,317,687	+		DZA65_RS06320	0.85	+0.5
1,317,688	-		DZA65_RS06320	0.85	+0.5
1,317,688	-		DZA65_RS06320	0.85	+1.0
1,317,688	-		DZA65_RS06320	0.85	+0.4
1,317,742	+				-1.4
1,317,742	+				+1.2
1,317,742	+				-0.5
1,317,742	+				+0.1
1,317,743	-				-0.2
1,317,743	-				-0.6
1,317,743	-				+1.0
1,317,743	-				-0.3
1,317,743	-				-0.7
1,317,743	-				-0.5
1,317,891	+				-0.1
1,317,923	-				-0.1
1,317,939	+				+1.5
1,317,940	-				-1.1
1,317,976	+				+2.1
1,317,976	+				+0.1
1,317,976	+				-1.1
1,317,976	+				+0.5
1,317,977	-				-0.7
1,317,977	-				-0.2
1,317,996	+				+0.2
1,317,997	-				-0.2
1,317,997	-				-0.1
1,317,997	-				-1.1
1,317,997	-				+1.8
1,318,010	+				+0.3
1,318,010	+				-0.3
1,318,010	+				-0.5
1,318,010	+				-0.9
1,318,010	+				-1.3
1,318,010	+				-0.1
1,318,010	+				+0.4
1,318,010	+				-0.7
1,318,010	+				-0.1
1,318,010	+				-0.1
1,318,010	+				+1.2
1,318,010	+				+0.2
1,318,010	+				+0.3
1,318,010	+				+0.5
1,318,010	+				+0.5
1,318,010	+				+0.1
1,318,010	+				+3.0
1,318,010	+				-0.9
1,318,010	+				+0.1
1,318,010	+				-0.2
1,318,010	+				-1.2
1,318,010	+				-0.4
1,318,010	+				-0.5
1,318,010	+				-0.4
1,318,010	+				-1.0
1,318,010	+				+0.3
1,318,011	-				-0.2
1,318,011	-				-0.1
1,318,011	-				+2.2
1,318,011	-				+0.3
1,318,011	-				+0.3
1,318,011	-				-0.2
1,318,011	-				-0.9
1,318,011	-				-1.7
1,318,011	-				+1.2
1,318,011	-				-0.7
1,318,011	-				+0.3
1,318,011	-				-0.5
1,318,014	+				+0.5