Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06295

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS06290 and DZA65_RS06295 are separated by 98 nucleotidesDZA65_RS06295 and DZA65_RS06300 overlap by 1 nucleotidesDZA65_RS06300 and DZA65_RS06305 overlap by 17 nucleotides DZA65_RS06290: DZA65_RS06290 - isochorismate synthase MenF, at 1,309,955 to 1,311,283 _RS06290 DZA65_RS06295: DZA65_RS06295 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 1,311,382 to 1,313,058 _RS06295 DZA65_RS06300: DZA65_RS06300 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,313,058 to 1,313,849 _RS06300 DZA65_RS06305: DZA65_RS06305 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,313,833 to 1,314,690 _RS06305 Position (kb) 1311 1312 1313 1314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1310.458 kb on + strand, within DZA65_RS06290at 1310.460 kb on + strand, within DZA65_RS06290at 1310.461 kb on - strand, within DZA65_RS06290at 1310.461 kb on - strand, within DZA65_RS06290at 1310.505 kb on + strand, within DZA65_RS06290at 1310.505 kb on + strand, within DZA65_RS06290at 1310.505 kb on + strand, within DZA65_RS06290at 1310.505 kb on + strand, within DZA65_RS06290at 1310.505 kb on + strand, within DZA65_RS06290at 1310.505 kb on + strand, within DZA65_RS06290at 1310.505 kb on + strand, within DZA65_RS06290at 1310.506 kb on - strand, within DZA65_RS06290at 1310.506 kb on - strand, within DZA65_RS06290at 1310.506 kb on - strand, within DZA65_RS06290at 1310.508 kb on + strand, within DZA65_RS06290at 1310.508 kb on + strand, within DZA65_RS06290at 1310.508 kb on + strand, within DZA65_RS06290at 1310.508 kb on + strand, within DZA65_RS06290at 1310.508 kb on + strand, within DZA65_RS06290at 1310.508 kb on + strand, within DZA65_RS06290at 1310.508 kb on + strand, within DZA65_RS06290at 1310.508 kb on + strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.509 kb on - strand, within DZA65_RS06290at 1310.636 kb on + strand, within DZA65_RS06290at 1310.637 kb on - strand, within DZA65_RS06290at 1310.637 kb on - strand, within DZA65_RS06290at 1310.653 kb on + strand, within DZA65_RS06290at 1310.653 kb on + strand, within DZA65_RS06290at 1310.654 kb on - strand, within DZA65_RS06290at 1310.654 kb on - strand, within DZA65_RS06290at 1310.654 kb on - strand, within DZA65_RS06290at 1310.722 kb on + strand, within DZA65_RS06290at 1310.723 kb on - strand, within DZA65_RS06290at 1310.817 kb on + strand, within DZA65_RS06290at 1310.817 kb on + strand, within DZA65_RS06290at 1310.817 kb on + strandat 1310.817 kb on + strand, within DZA65_RS06290at 1310.818 kb on - strand, within DZA65_RS06290at 1310.818 kb on - strand, within DZA65_RS06290at 1310.818 kb on - strandat 1310.854 kb on + strand, within DZA65_RS06290at 1310.854 kb on + strand, within DZA65_RS06290at 1310.855 kb on - strand, within DZA65_RS06290at 1310.855 kb on - strand, within DZA65_RS06290at 1310.855 kb on - strand, within DZA65_RS06290at 1311.177 kb on - strandat 1311.177 kb on - strandat 1311.177 kb on - strandat 1311.274 kb on + strandat 1311.274 kb on + strandat 1311.275 kb on - strandat 1311.275 kb on - strandat 1311.282 kb on - strandat 1311.292 kb on - strandat 1311.292 kb on - strandat 1311.302 kb on - strandat 1311.309 kb on + strandat 1311.310 kb on - strandat 1311.310 kb on - strandat 1311.310 kb on - strandat 1311.340 kb on + strandat 1311.341 kb on - strandat 1311.341 kb on - strandat 1311.341 kb on - strandat 1311.341 kb on - strandat 1311.344 kb on + strandat 1311.344 kb on + strandat 1311.345 kb on - strandat 1311.393 kb on + strandat 1311.393 kb on + strandat 1311.393 kb on + strandat 1311.393 kb on + strandat 1311.393 kb on + strandat 1311.394 kb on - strandat 1311.394 kb on - strandat 1311.394 kb on - strandat 1311.394 kb on - strandat 1311.420 kb on - strandat 1311.456 kb on + strandat 1311.456 kb on + strandat 1311.457 kb on - strandat 1311.457 kb on - strandat 1311.686 kb on + strand, within DZA65_RS06295at 1311.686 kb on + strand, within DZA65_RS06295at 1311.687 kb on - strand, within DZA65_RS06295at 1311.788 kb on + strand, within DZA65_RS06295at 1311.807 kb on + strand, within DZA65_RS06295at 1311.808 kb on - strand, within DZA65_RS06295at 1311.808 kb on - strand, within DZA65_RS06295at 1311.808 kb on - strand, within DZA65_RS06295at 1311.808 kb on - strand, within DZA65_RS06295at 1311.876 kb on + strand, within DZA65_RS06295at 1311.877 kb on - strand, within DZA65_RS06295at 1311.902 kb on + strand, within DZA65_RS06295at 1311.902 kb on + strand, within DZA65_RS06295at 1311.903 kb on - strand, within DZA65_RS06295at 1311.903 kb on - strand, within DZA65_RS06295at 1311.904 kb on + strand, within DZA65_RS06295at 1311.904 kb on + strand, within DZA65_RS06295at 1311.904 kb on + strand, within DZA65_RS06295at 1311.905 kb on - strand, within DZA65_RS06295at 1312.268 kb on + strand, within DZA65_RS06295at 1312.268 kb on + strand, within DZA65_RS06295at 1312.268 kb on + strand, within DZA65_RS06295at 1312.268 kb on + strand, within DZA65_RS06295at 1312.269 kb on - strand, within DZA65_RS06295at 1312.269 kb on - strand, within DZA65_RS06295at 1312.269 kb on - strand, within DZA65_RS06295at 1312.269 kb on - strand, within DZA65_RS06295at 1312.300 kb on + strand, within DZA65_RS06295at 1312.615 kb on + strand, within DZA65_RS06295at 1312.616 kb on - strand, within DZA65_RS06295at 1312.726 kb on + strand, within DZA65_RS06295at 1312.727 kb on - strand, within DZA65_RS06295at 1312.727 kb on - strand, within DZA65_RS06295at 1312.727 kb on - strand, within DZA65_RS06295at 1312.727 kb on - strand, within DZA65_RS06295at 1312.818 kb on - strand, within DZA65_RS06295at 1312.820 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strandat 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.857 kb on + strand, within DZA65_RS06295at 1312.857 kb on + strand, within DZA65_RS06295at 1312.857 kb on + strand, within DZA65_RS06295at 1312.858 kb on - strand, within DZA65_RS06295at 1312.858 kb on - strand, within DZA65_RS06295at 1312.977 kb on + strandat 1312.977 kb on + strandat 1312.977 kb on + strandat 1312.977 kb on + strandat 1312.977 kb on + strandat 1312.977 kb on + strandat 1312.978 kb on - strandat 1312.978 kb on - strandat 1312.978 kb on - strandat 1313.161 kb on - strand, within DZA65_RS06300at 1313.161 kb on - strand, within DZA65_RS06300at 1313.334 kb on + strand, within DZA65_RS06300at 1313.334 kb on + strand, within DZA65_RS06300at 1313.334 kb on + strand, within DZA65_RS06300at 1313.334 kb on + strand, within DZA65_RS06300at 1313.334 kb on + strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.481 kb on - strand, within DZA65_RS06300at 1313.500 kb on - strand, within DZA65_RS06300at 1313.557 kb on + strand, within DZA65_RS06300at 1313.558 kb on - strand, within DZA65_RS06300at 1313.558 kb on - strand, within DZA65_RS06300at 1313.611 kb on + strand, within DZA65_RS06300at 1313.611 kb on + strand, within DZA65_RS06300at 1313.612 kb on - strand, within DZA65_RS06300at 1313.612 kb on - strand, within DZA65_RS06300at 1313.650 kb on + strand, within DZA65_RS06300at 1313.651 kb on - strand, within DZA65_RS06300at 1313.667 kb on + strand, within DZA65_RS06300at 1313.781 kb on + strandat 1313.782 kb on - strandat 1313.832 kb on + strandat 1313.833 kb on - strandat 1313.833 kb on - strandat 1313.861 kb on - strandat 1313.911 kb on + strandat 1313.990 kb on + strand, within DZA65_RS06305

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,310,458 + DZA65_RS06290 0.38 -0.5
1,310,460 + DZA65_RS06290 0.38 -0.2
1,310,461 - DZA65_RS06290 0.38 +0.5
1,310,461 - DZA65_RS06290 0.38 +1.8
1,310,505 + DZA65_RS06290 0.41 +1.5
1,310,505 + DZA65_RS06290 0.41 +1.2
1,310,505 + DZA65_RS06290 0.41 -0.1
1,310,505 + DZA65_RS06290 0.41 +1.0
1,310,505 + DZA65_RS06290 0.41 -0.9
1,310,505 + DZA65_RS06290 0.41 +0.9
1,310,505 + DZA65_RS06290 0.41 +1.1
1,310,506 - DZA65_RS06290 0.41 +0.1
1,310,506 - DZA65_RS06290 0.41 +0.1
1,310,506 - DZA65_RS06290 0.41 -0.2
1,310,508 + DZA65_RS06290 0.42 -2.5
1,310,508 + DZA65_RS06290 0.42 -0.5
1,310,508 + DZA65_RS06290 0.42 -1.8
1,310,508 + DZA65_RS06290 0.42 +0.0
1,310,508 + DZA65_RS06290 0.42 +0.2
1,310,508 + DZA65_RS06290 0.42 -1.1
1,310,508 + DZA65_RS06290 0.42 +0.5
1,310,508 + DZA65_RS06290 0.42 -0.2
1,310,509 - DZA65_RS06290 0.42 -0.0
1,310,509 - DZA65_RS06290 0.42 -0.7
1,310,509 - DZA65_RS06290 0.42 +0.1
1,310,509 - DZA65_RS06290 0.42 -1.6
1,310,509 - DZA65_RS06290 0.42 +1.7
1,310,509 - DZA65_RS06290 0.42 +0.8
1,310,509 - DZA65_RS06290 0.42 -0.5
1,310,509 - DZA65_RS06290 0.42 -0.5
1,310,509 - DZA65_RS06290 0.42 -0.2
1,310,509 - DZA65_RS06290 0.42 -0.5
1,310,509 - DZA65_RS06290 0.42 -1.2
1,310,509 - DZA65_RS06290 0.42 -0.6
1,310,509 - DZA65_RS06290 0.42 -1.5
1,310,636 + DZA65_RS06290 0.51 +0.1
1,310,637 - DZA65_RS06290 0.51 +0.1
1,310,637 - DZA65_RS06290 0.51 -0.5
1,310,653 + DZA65_RS06290 0.53 +0.0
1,310,653 + DZA65_RS06290 0.53 -0.8
1,310,654 - DZA65_RS06290 0.53 +0.7
1,310,654 - DZA65_RS06290 0.53 +0.9
1,310,654 - DZA65_RS06290 0.53 +0.4
1,310,722 + DZA65_RS06290 0.58 +0.3
1,310,723 - DZA65_RS06290 0.58 +1.1
1,310,817 + DZA65_RS06290 0.65 -0.3
1,310,817 + DZA65_RS06290 0.65 -0.5
1,310,817 + +0.5
1,310,817 + DZA65_RS06290 0.65 -1.1
1,310,818 - DZA65_RS06290 0.65 +0.2
1,310,818 - DZA65_RS06290 0.65 +0.9
1,310,818 - +1.9
1,310,854 + DZA65_RS06290 0.68 +0.5
1,310,854 + DZA65_RS06290 0.68 -0.8
1,310,855 - DZA65_RS06290 0.68 -0.6
1,310,855 - DZA65_RS06290 0.68 -0.2
1,310,855 - DZA65_RS06290 0.68 +0.0
1,311,177 - -0.9
1,311,177 - -0.2
1,311,177 - -1.5
1,311,274 + -0.4
1,311,274 + -0.6
1,311,275 - +0.5
1,311,275 - +0.3
1,311,282 - +0.1
1,311,292 - +2.4
1,311,292 - -0.8
1,311,302 - -2.5
1,311,309 + +0.4
1,311,310 - -0.5
1,311,310 - +0.1
1,311,310 - +1.1
1,311,340 + +2.1
1,311,341 - -1.8
1,311,341 - +0.3
1,311,341 - +1.1
1,311,341 - +0.3
1,311,344 + -0.9
1,311,344 + -1.5
1,311,345 - -1.4
1,311,393 + -0.3
1,311,393 + +0.5
1,311,393 + -0.8
1,311,393 + +0.3
1,311,393 + +0.5
1,311,394 - -0.8
1,311,394 - +0.1
1,311,394 - -1.1
1,311,394 - -0.5
1,311,420 - -0.8
1,311,456 + -2.1
1,311,456 + +0.1
1,311,457 - +0.7
1,311,457 - -0.7
1,311,686 + DZA65_RS06295 0.18 +1.0
1,311,686 + DZA65_RS06295 0.18 +1.0
1,311,687 - DZA65_RS06295 0.18 -0.6
1,311,788 + DZA65_RS06295 0.24 +0.0
1,311,807 + DZA65_RS06295 0.25 -0.7
1,311,808 - DZA65_RS06295 0.25 +0.5
1,311,808 - DZA65_RS06295 0.25 +0.0
1,311,808 - DZA65_RS06295 0.25 +0.7
1,311,808 - DZA65_RS06295 0.25 -0.4
1,311,876 + DZA65_RS06295 0.29 -0.7
1,311,877 - DZA65_RS06295 0.30 +0.8
1,311,902 + DZA65_RS06295 0.31 +0.8
1,311,902 + DZA65_RS06295 0.31 +0.3
1,311,903 - DZA65_RS06295 0.31 +0.0
1,311,903 - DZA65_RS06295 0.31 +2.1
1,311,904 + DZA65_RS06295 0.31 +1.5
1,311,904 + DZA65_RS06295 0.31 -1.3
1,311,904 + DZA65_RS06295 0.31 -0.2
1,311,905 - DZA65_RS06295 0.31 -1.7
1,312,268 + DZA65_RS06295 0.53 -0.5
1,312,268 + DZA65_RS06295 0.53 +1.7
1,312,268 + DZA65_RS06295 0.53 -2.1
1,312,268 + DZA65_RS06295 0.53 -1.1
1,312,269 - DZA65_RS06295 0.53 -1.5
1,312,269 - DZA65_RS06295 0.53 -2.7
1,312,269 - DZA65_RS06295 0.53 +0.2
1,312,269 - DZA65_RS06295 0.53 -0.5
1,312,300 + DZA65_RS06295 0.55 -0.1
1,312,615 + DZA65_RS06295 0.74 +1.2
1,312,616 - DZA65_RS06295 0.74 -1.2
1,312,726 + DZA65_RS06295 0.80 -0.5
1,312,727 - DZA65_RS06295 0.80 -0.1
1,312,727 - DZA65_RS06295 0.80 -1.5
1,312,727 - DZA65_RS06295 0.80 -0.2
1,312,727 - DZA65_RS06295 0.80 +2.5
1,312,818 - DZA65_RS06295 0.86 -0.2
1,312,820 + DZA65_RS06295 0.86 -0.1
1,312,852 + DZA65_RS06295 0.88 +0.2
1,312,852 + DZA65_RS06295 0.88 -1.9
1,312,852 + DZA65_RS06295 0.88 +0.3
1,312,852 + DZA65_RS06295 0.88 +1.5
1,312,852 + DZA65_RS06295 0.88 +0.2
1,312,852 + DZA65_RS06295 0.88 -0.3
1,312,852 + DZA65_RS06295 0.88 +1.2
1,312,852 + DZA65_RS06295 0.88 -0.0
1,312,852 + DZA65_RS06295 0.88 -1.1
1,312,852 + +0.5
1,312,853 - DZA65_RS06295 0.88 -0.0
1,312,853 - DZA65_RS06295 0.88 -0.8
1,312,853 - DZA65_RS06295 0.88 -0.4
1,312,853 - DZA65_RS06295 0.88 -0.2
1,312,853 - DZA65_RS06295 0.88 -0.2
1,312,853 - DZA65_RS06295 0.88 +1.3
1,312,853 - DZA65_RS06295 0.88 +1.4
1,312,853 - DZA65_RS06295 0.88 -0.1
1,312,853 - DZA65_RS06295 0.88 +0.3
1,312,853 - DZA65_RS06295 0.88 -1.5
1,312,853 - DZA65_RS06295 0.88 +1.1
1,312,853 - DZA65_RS06295 0.88 +0.5
1,312,857 + DZA65_RS06295 0.88 +1.1
1,312,857 + DZA65_RS06295 0.88 -0.2
1,312,857 + DZA65_RS06295 0.88 +0.9
1,312,858 - DZA65_RS06295 0.88 +0.7
1,312,858 - DZA65_RS06295 0.88 -0.5
1,312,977 + -0.5
1,312,977 + -1.1
1,312,977 + -1.5
1,312,977 + -1.1
1,312,977 + -1.1
1,312,977 + -1.1
1,312,978 - -0.8
1,312,978 - +1.1
1,312,978 - -1.1
1,313,161 - DZA65_RS06300 0.13 -0.2
1,313,161 - DZA65_RS06300 0.13 -0.5
1,313,334 + DZA65_RS06300 0.35 -0.6
1,313,334 + DZA65_RS06300 0.35 -1.1
1,313,334 + DZA65_RS06300 0.35 -0.9
1,313,334 + DZA65_RS06300 0.35 +0.5
1,313,334 + DZA65_RS06300 0.35 -2.0
1,313,335 - DZA65_RS06300 0.35 -0.2
1,313,335 - DZA65_RS06300 0.35 +0.5
1,313,335 - DZA65_RS06300 0.35 +0.2
1,313,335 - DZA65_RS06300 0.35 -1.1
1,313,335 - DZA65_RS06300 0.35 -2.9
1,313,335 - DZA65_RS06300 0.35 -0.2
1,313,335 - DZA65_RS06300 0.35 +0.5
1,313,481 - DZA65_RS06300 0.53 -0.7
1,313,500 - DZA65_RS06300 0.56 +0.7
1,313,557 + DZA65_RS06300 0.63 +2.1
1,313,558 - DZA65_RS06300 0.63 -0.4
1,313,558 - DZA65_RS06300 0.63 -2.0
1,313,611 + DZA65_RS06300 0.70 -0.7
1,313,611 + DZA65_RS06300 0.70 +1.0
1,313,612 - DZA65_RS06300 0.70 -0.2
1,313,612 - DZA65_RS06300 0.70 -0.3
1,313,650 + DZA65_RS06300 0.75 -0.7
1,313,651 - DZA65_RS06300 0.75 +0.9
1,313,667 + DZA65_RS06300 0.77 -0.7
1,313,781 + +0.6
1,313,782 - +0.4
1,313,832 + +1.1
1,313,833 - -2.3
1,313,833 - +0.9
1,313,861 - +0.8
1,313,911 + -0.5
1,313,990 + DZA65_RS06305 0.18 -1.8

Or see this region's nucleotide sequence