Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06005

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,237,456	+				+1.2
1,237,497	+				+1.2
1,237,503	+				+1.1
1,237,503	+				+2.1
1,237,503	+				+0.0
1,237,503	+				+0.1
1,237,504	-				-0.7
1,237,504	-				-0.8
1,237,504	-				-0.8
1,237,504	-				+0.0
1,237,504	-				+0.5
1,237,504	-				+0.9
1,237,504	-				+0.1
1,237,504	-				+0.4
1,237,516	+				+1.4
1,237,516	+				+0.2
1,237,516	+				-0.1
1,237,516	+				-0.6
1,237,516	+				+0.3
1,237,516	+				+0.3
1,237,516	+				-1.0
1,237,517	-				+2.1
1,237,517	-				+0.1
1,237,517	-				+1.5
1,237,517	-				-0.1
1,237,517	-				-0.7
1,237,517	-				+0.5
1,237,517	-				-0.3
1,237,517	-				-0.1
1,237,517	-				-0.7
1,237,517	-				+1.1
1,237,517	-				-0.9
1,237,590	+				+0.9
1,237,591	-				-0.3
1,237,591	-				-1.1
1,237,628	+				+0.7
1,237,687	+				-0.6
1,237,747	-				+0.5
1,237,747	-				+0.5
1,237,754	+				-2.0
1,237,754	+				+0.5
1,237,803	+				+0.5
1,237,803	+				+2.4
1,237,804	-				+0.8
1,237,804	-				-0.1
1,237,804	-				-2.5
1,237,804	-				+2.3
1,237,841	-		DZA65_RS06000	0.17	+0.9
1,237,841	-		DZA65_RS06000	0.17	-0.2
1,237,905	+		DZA65_RS06000	0.37	-1.1
1,237,905	+		DZA65_RS06000	0.37	+1.2
1,237,905	+		DZA65_RS06000	0.37	-1.8
1,237,905	+		DZA65_RS06000	0.37	+0.8
1,237,905	+		DZA65_RS06000	0.37	+0.2
1,237,905	+		DZA65_RS06000	0.37	+0.9
1,237,906	-		DZA65_RS06000	0.38	+1.1
1,237,906	-		DZA65_RS06000	0.38	-0.1
1,237,908	+		DZA65_RS06000	0.38	-0.3
1,237,908	+		DZA65_RS06000	0.38	+1.5
1,237,908	+		DZA65_RS06000	0.38	+0.9
1,237,908	+		DZA65_RS06000	0.38	-1.5
1,237,908	+		DZA65_RS06000	0.38	-1.1
1,237,909	-		DZA65_RS06000	0.39	-1.1
1,237,909	-		DZA65_RS06000	0.39	-0.7
1,238,017	+		DZA65_RS06000	0.73	-2.3
1,238,017	+		DZA65_RS06000	0.73	-1.1
1,238,017	+		DZA65_RS06000	0.73	-1.3
1,238,017	+		DZA65_RS06000	0.73	+0.1
1,238,017	+		DZA65_RS06000	0.73	+0.8
1,238,017	+		DZA65_RS06000	0.73	-0.3
1,238,018	-		DZA65_RS06000	0.73	-2.8
1,238,018	-		DZA65_RS06000	0.73	-0.3
1,238,018	-		DZA65_RS06000	0.73	-0.4
1,238,021	+		DZA65_RS06000	0.74	+0.1
1,238,021	+		DZA65_RS06000	0.74	-0.5
1,238,021	+		DZA65_RS06000	0.74	-1.1
1,238,021	+		DZA65_RS06000	0.74	-1.1
1,238,021	+		DZA65_RS06000	0.74	+0.1
1,238,021	+		DZA65_RS06000	0.74	+0.4
1,238,021	+		DZA65_RS06000	0.74	+0.5
1,238,021	+		DZA65_RS06000	0.74	-0.2
1,238,022	-		DZA65_RS06000	0.75	-0.6
1,238,022	-		DZA65_RS06000	0.75	-1.2
1,238,022	-		DZA65_RS06000	0.75	+0.9
1,238,022	-		DZA65_RS06000	0.75	+0.2
1,238,022	-		DZA65_RS06000	0.75	+0.5
1,238,022	-		DZA65_RS06000	0.75	+0.6
1,238,022	-		DZA65_RS06000	0.75	-1.3
1,238,022	-		DZA65_RS06000	0.75	+0.8
1,238,023	+		DZA65_RS06000	0.75	-1.9
1,238,024	-		DZA65_RS06000	0.75	+0.7
1,238,024	-		DZA65_RS06000	0.75	+1.6
1,238,261	+				-0.4
1,238,261	+				-0.2
1,238,262	-				+0.5
1,238,273	+				-1.5
1,238,275	+				-1.3
1,238,275	+				+0.8
1,238,302	+				+1.5
1,238,303	-				-2.6
1,238,303	-				+0.1
1,238,321	+				-1.1
1,238,321	+				-1.4
1,238,321	+				+0.1
1,238,321	+				+0.9
1,238,321	+				+0.5
1,238,321	+				+0.2
1,238,321	+				-0.4
1,238,321	+				+0.3
1,238,322	-				+0.5
1,238,322	-				+1.3
1,238,322	-				-1.2
1,238,324	-				-2.5
1,238,324	-				+2.1
1,238,445	-				-0.5
1,238,445	-				+1.3
1,238,724	+		DZA65_RS06005	0.21	-0.1
1,238,724	+		DZA65_RS06005	0.21	+0.1
1,238,724	+		DZA65_RS06005	0.21	-0.9
1,238,724	+		DZA65_RS06005	0.21	-1.1
1,238,724	+		DZA65_RS06005	0.21	-0.5
1,238,724	+		DZA65_RS06005	0.21	-1.2
1,238,724	+		DZA65_RS06005	0.21	-0.5
1,238,725	-		DZA65_RS06005	0.21	-0.5
1,238,725	-		DZA65_RS06005	0.21	-0.8
1,238,725	-		DZA65_RS06005	0.21	-0.1
1,238,725	-		DZA65_RS06005	0.21	-1.7
1,238,759	+		DZA65_RS06005	0.24	-0.8
1,238,759	+		DZA65_RS06005	0.24	+1.3
1,238,759	+		DZA65_RS06005	0.24	-0.4
1,238,760	-		DZA65_RS06005	0.24	-2.3
1,238,760	-		DZA65_RS06005	0.24	-1.4
1,238,763	+		DZA65_RS06005	0.24	-1.8
1,238,764	-		DZA65_RS06005	0.24	-1.3
1,238,764	-				+1.9
1,238,764	-		DZA65_RS06005	0.24	+0.5
1,238,885	+		DZA65_RS06005	0.33	-0.2
1,238,886	-		DZA65_RS06005	0.33	-1.0
1,239,065	+		DZA65_RS06005	0.47	+0.1
1,239,066	-		DZA65_RS06005	0.47	-2.1
1,239,066	-		DZA65_RS06005	0.47	-0.7
1,239,269	+		DZA65_RS06005	0.63	-0.8
1,239,610	-		DZA65_RS06005	0.89	-0.6
1,239,610	-		DZA65_RS06005	0.89	-1.9
1,239,647	+				-1.8
1,239,695	+				+0.3
1,239,695	+				-0.5
1,239,695	+				-1.3
1,239,696	-				+0.2
1,239,696	-				+0.5
1,239,716	+				-0.2
1,239,772	+				-1.8
1,239,772	+				-0.5
1,239,773	-				-0.3
1,239,773	-				-0.1
1,239,773	-				-1.1
1,239,773	-				+0.7
1,239,875	+				+0.3
1,239,875	+				+1.2
1,239,875	+				+0.0
1,239,876	-				-0.2
1,239,876	-				+0.5
1,239,876	-				-0.2
1,239,881	+				-0.2
1,239,881	+				+1.1
1,239,881	+				+0.4
1,239,881	+				-0.5
1,239,881	+				+0.0
1,239,890	+				-1.4
1,239,890	+				-0.5
1,239,890	+				+0.3
1,239,890	+				+0.2
1,239,890	+				-1.6
1,239,891	-				-0.3
1,239,896	+				+0.5
1,239,897	-				+1.4
1,239,897	-				+0.1
1,239,900	-				-0.2
1,239,911	+				+0.5
1,239,911	+				-1.8
1,239,911	+				+0.2
1,239,911	+				+1.5
1,239,912	-				+0.1
1,239,912	-				+0.5
1,239,912	-				-1.1
1,239,925	+				+2.3
1,239,992	+				-0.7
1,239,992	+				+1.0
1,239,992	+				+0.1
1,239,992	+				-0.2
1,239,992	+				-1.0
1,239,992	+				+1.5
1,239,992	+				-1.2
1,239,992	+				-1.0
1,239,992	+				+0.4
1,239,993	-				-0.6
1,239,993	-				+1.0
1,239,993	-				-1.1
1,239,993	-				+0.1
1,240,089	+				-0.9
1,240,090	-				+0.7