Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05320

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,094,278	+		DZA65_RS05310	0.68	+0.3
1,094,279	-		DZA65_RS05310	0.68	-4.3
1,094,279	-		DZA65_RS05310	0.68	-2.6
1,094,295	+		DZA65_RS05310	0.70	-3.4
1,094,295	+		DZA65_RS05310	0.70	-1.0
1,094,295	+		DZA65_RS05310	0.70	-2.4
1,094,295	+		DZA65_RS05310	0.70	-1.4
1,094,295	+		DZA65_RS05310	0.70	-2.6
1,094,296	-		DZA65_RS05310	0.70	-2.0
1,094,296	-		DZA65_RS05310	0.70	-1.9
1,094,296	-		DZA65_RS05310	0.70	-1.0
1,094,296	-		DZA65_RS05310	0.70	-3.8
1,094,296	-		DZA65_RS05310	0.70	-1.8
1,094,296	-				+0.6
1,094,296	-		DZA65_RS05310	0.70	-3.7
1,094,296	-		DZA65_RS05310	0.70	-0.8
1,094,296	-		DZA65_RS05310	0.70	-4.0
1,094,362	+		DZA65_RS05310	0.78	-1.0
1,094,362	+		DZA65_RS05310	0.78	-5.2
1,094,462	-				-1.8
1,094,484	-				-0.4
1,094,530	+				-0.4
1,094,531	-				-0.2
1,094,531	-				-0.4
1,094,551	-				-0.4
1,094,551	-				-0.3
1,094,588	+				+0.0
1,094,588	+				-0.4
1,094,589	-				-1.1
1,094,589	-				-2.6
1,094,589	-				+0.2
1,094,643	+				-0.4
1,094,643	+				-1.2
1,094,643	+				+0.1
1,094,644	-				-0.2
1,094,644	-				-1.8
1,094,644	-				-1.0
1,094,644	-				-0.1
1,094,723	-				+0.4
1,094,753	+				-0.0
1,094,753	+				-1.0
1,094,754	-				-0.2
1,094,763	+				-1.0
1,094,763	+				-0.3
1,094,763	+				+0.9
1,094,764	-				-0.1
1,094,764	-				+2.1
1,094,764	-				+1.1
1,094,764	-				+0.6
1,094,828	+		DZA65_RS05315	0.11	+1.0
1,094,828	+		DZA65_RS05315	0.11	+0.3
1,094,828	+		DZA65_RS05315	0.11	-0.4
1,094,828	+		DZA65_RS05315	0.11	-0.4
1,094,828	+		DZA65_RS05315	0.11	+0.6
1,094,828	+		DZA65_RS05315	0.11	-1.0
1,094,829	-		DZA65_RS05315	0.11	-0.1
1,094,829	-		DZA65_RS05315	0.11	-1.4
1,094,829	-		DZA65_RS05315	0.11	+0.8
1,094,829	-		DZA65_RS05315	0.11	+0.2
1,094,829	-		DZA65_RS05315	0.11	-1.2
1,094,829	-		DZA65_RS05315	0.11	+0.8
1,094,829	-		DZA65_RS05315	0.11	+0.1
1,094,871	+		DZA65_RS05315	0.19	-2.6
1,094,871	+		DZA65_RS05315	0.19	-0.2
1,094,871	+		DZA65_RS05315	0.19	+0.6
1,094,871	+		DZA65_RS05315	0.19	+0.1
1,094,871	+		DZA65_RS05315	0.19	-0.4
1,094,871	+		DZA65_RS05315	0.19	+0.3
1,094,872	-		DZA65_RS05315	0.20	+0.1
1,094,872	-		DZA65_RS05315	0.20	-1.0
1,094,872	-		DZA65_RS05315	0.20	+1.1
1,094,872	-		DZA65_RS05315	0.20	-2.8
1,094,872	-		DZA65_RS05315	0.20	+1.1
1,094,872	-		DZA65_RS05315	0.20	+0.0
1,094,872	-		DZA65_RS05315	0.20	-0.8
1,094,872	-		DZA65_RS05315	0.20	-0.9
1,094,885	-		DZA65_RS05315	0.22	-1.3
1,094,945	+		DZA65_RS05315	0.34	+0.0
1,094,946	-		DZA65_RS05315	0.35	-0.3
1,094,946	-		DZA65_RS05315	0.35	+1.6
1,095,070	-		DZA65_RS05315	0.60	+1.0
1,095,127	+		DZA65_RS05315	0.71	+1.1
1,095,138	+		DZA65_RS05315	0.74	-0.1
1,095,275	-				-0.2
1,095,299	+				-1.3
1,095,449	-		DZA65_RS05320	0.32	-0.1
1,095,555	+		DZA65_RS05320	0.49	+1.6
1,095,555	+		DZA65_RS05320	0.49	+1.0
1,095,555	+		DZA65_RS05320	0.49	+0.4
1,095,555	+		DZA65_RS05320	0.49	+0.1
1,095,555	+		DZA65_RS05320	0.49	+0.8
1,095,556	-		DZA65_RS05320	0.50	-1.6
1,095,556	-		DZA65_RS05320	0.50	-0.9
1,095,556	-		DZA65_RS05320	0.50	+1.3
1,095,618	+		DZA65_RS05320	0.60	-0.5
1,095,618	+		DZA65_RS05320	0.60	-0.4
1,095,618	+		DZA65_RS05320	0.60	+1.3
1,095,769	+		DZA65_RS05320	0.86	+0.7
1,095,784	-		DZA65_RS05320	0.88	-2.4
1,095,822	-				+3.0
1,095,852	+				-1.4
1,095,872	+				+0.7
1,095,872	+				+1.1
1,095,872	+				+0.4
1,095,872	+				-1.6
1,095,872	+				-0.6
1,095,872	+				-0.4
1,095,873	-				-0.0
1,095,873	-				+0.4
1,095,873	-				+0.5
1,095,873	-				+0.4
1,095,911	+				-0.2
1,095,911	+				-0.9
1,095,911	+				+0.2
1,095,926	+				+1.4
1,095,926	+				-0.4
1,095,927	-		DZA65_RS05325	0.10	-0.7
1,096,082	+		DZA65_RS05325	0.48	+2.0
1,096,083	-		DZA65_RS05325	0.49	-0.4
1,096,124	+		DZA65_RS05325	0.59	-0.4
1,096,125	-		DZA65_RS05325	0.59	+0.4
1,096,125	-		DZA65_RS05325	0.59	-0.2
1,096,174	+		DZA65_RS05325	0.71	+0.0
1,096,174	+		DZA65_RS05325	0.71	+0.8
1,096,174	+		DZA65_RS05325	0.71	-1.8
1,096,175	-		DZA65_RS05325	0.71	+0.3
1,096,353	+		DZA65_RS05330	0.24	-0.7
1,096,353	+		DZA65_RS05330	0.24	-0.6
1,096,377	+		DZA65_RS05330	0.30	+1.3
1,096,377	+		DZA65_RS05330	0.30	+0.6
1,096,378	-		DZA65_RS05330	0.30	-0.8
1,096,378	-		DZA65_RS05330	0.30	+1.0
1,096,378	-		DZA65_RS05330	0.30	-0.6
1,096,378	-		DZA65_RS05330	0.30	+1.6
1,096,385	+		DZA65_RS05330	0.32	+0.4
1,096,385	+		DZA65_RS05330	0.32	+0.4
1,096,385	+		DZA65_RS05330	0.32	-0.1
1,096,385	+		DZA65_RS05330	0.32	+0.4
1,096,386	-		DZA65_RS05330	0.32	-0.6
1,096,396	-		DZA65_RS05330	0.35	+1.1
1,096,396	-		DZA65_RS05330	0.35	+0.6
1,096,658	+				+0.1
1,096,658	+				-0.2
1,096,659	-				-0.1
1,096,668	+				+0.4
1,096,668	+				+0.2
1,096,668	+				+1.0
1,096,669	-				-1.6
1,096,678	+				-0.4
1,096,678	+				-0.1
1,096,678	+				+2.6
1,096,678	+				+0.6
1,096,678	+				+2.2
1,096,678	+				+0.1
1,096,678	+				+1.9
1,096,679	-				-0.1
1,096,679	-				-2.4
1,096,679	-				-0.4
1,096,679	-				-2.0
1,096,679	-				-0.8
1,096,714	+				-1.4
1,096,714	+				-0.4
1,096,714	+				+2.1
1,096,797	+				-0.8
1,096,826	+				+0.6
1,096,826	+				-0.2
1,096,852	+				-1.6
1,096,853	-				+0.7