Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05130

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,057,411	+				-1.3
1,057,427	+				+2.1
1,057,428	-				-0.1
1,057,449	+				-0.2
1,057,479	+				-0.2
1,057,480	-				-1.9
1,057,480	-				+0.4
1,057,514	+				+0.2
1,057,514	+				+0.8
1,057,514	+				-0.0
1,057,514	+				-1.1
1,057,514	+				+0.3
1,057,514	+				-1.4
1,057,514	+				-0.3
1,057,514	+				+0.0
1,057,514	+				+0.1
1,057,514	+				-2.4
1,057,514	+				+2.9
1,057,514	+				+0.6
1,057,514	+				-1.0
1,057,514	+				-0.0
1,057,514	+				-1.3
1,057,514	+				+0.0
1,057,514	+				+0.9
1,057,514	+				+0.6
1,057,514	+				+0.4
1,057,514	+				-2.9
1,057,515	-				-1.5
1,057,515	-				-2.2
1,057,515	-				+0.6
1,057,515	-				+1.4
1,057,515	-				+1.0
1,057,515	-				+2.7
1,057,515	-				+1.1
1,057,515	-				+0.6
1,057,515	-				+0.4
1,057,515	-				-0.8
1,057,515	-				+0.6
1,057,516	+				+0.2
1,057,516	+				-0.4
1,057,516	+				+1.1
1,057,516	+				-0.2
1,057,516	+				-1.1
1,057,516	+				+0.7
1,057,516	+				+0.6
1,057,516	+				-0.7
1,057,516	+				+0.6
1,057,517	-				-0.0
1,057,517	-				-2.4
1,057,523	+				+0.6
1,057,523	+				+0.8
1,057,523	+				-0.4
1,057,523	+				-0.1
1,057,523	+				+1.5
1,057,524	-				+0.8
1,057,524	-				-0.0
1,057,559	+				+0.2
1,057,559	+				-0.4
1,057,559	+				+1.0
1,057,559	+				-0.1
1,057,559	+				-0.9
1,057,559	+				-0.2
1,057,559	+				+0.3
1,057,560	-				+0.3
1,057,560	-				-0.2
1,057,560	-				+1.4
1,057,560	-				+0.4
1,057,560	-				+1.6
1,057,560	-				-0.8
1,057,560	-				-1.3
1,057,560	-				-0.4
1,057,560	-				-0.2
1,057,563	+				+0.6
1,057,563	+				+2.1
1,057,563	+				-1.8
1,057,563	+				-0.0
1,057,563	+				+1.6
1,057,563	+				+1.6
1,057,563	+				+0.2
1,057,563	+				-0.1
1,057,564	-				+0.8
1,057,564	-				+0.9
1,057,564	-				+0.9
1,057,564	-				-0.4
1,057,564	-				+0.9
1,057,564	-				-1.0
1,057,564	-				-0.4
1,057,611	-		DZA65_RS05125	0.13	+1.0
1,057,627	+		DZA65_RS05125	0.17	+0.3
1,057,627	+		DZA65_RS05125	0.17	-0.5
1,057,627	+		DZA65_RS05125	0.17	+0.7
1,057,627	+		DZA65_RS05125	0.17	+1.1
1,057,628	-		DZA65_RS05125	0.17	-0.8
1,057,628	-		DZA65_RS05125	0.17	-1.1
1,057,628	-		DZA65_RS05125	0.17	+1.0
1,057,628	-		DZA65_RS05125	0.17	-0.2
1,057,657	+		DZA65_RS05125	0.25	+0.8
1,057,657	+		DZA65_RS05125	0.25	+0.8
1,057,658	-		DZA65_RS05125	0.25	-0.9
1,057,658	-		DZA65_RS05125	0.25	+2.1
1,057,658	-		DZA65_RS05125	0.25	-0.6
1,057,658	-		DZA65_RS05125	0.25	-2.0
1,057,658	-		DZA65_RS05125	0.25	+1.4
1,057,658	-		DZA65_RS05125	0.25	-0.3
1,057,658	-		DZA65_RS05125	0.25	-0.2
1,057,658	-		DZA65_RS05125	0.25	-0.7
1,057,658	-		DZA65_RS05125	0.25	-0.7
1,057,658	-		DZA65_RS05125	0.25	-2.0
1,057,658	-		DZA65_RS05125	0.25	+0.3
1,057,686	-		DZA65_RS05125	0.33	+0.8
1,057,699	+		DZA65_RS05125	0.36	+1.9
1,057,700	-		DZA65_RS05125	0.37	+0.3
1,057,700	-		DZA65_RS05125	0.37	+0.1
1,057,700	-		DZA65_RS05125	0.37	+0.4
1,057,757	+		DZA65_RS05125	0.52	+1.0
1,057,757	+		DZA65_RS05125	0.52	+0.2
1,057,758	-		DZA65_RS05125	0.52	+0.1
1,057,802	-		DZA65_RS05125	0.64	-0.7
1,057,802	-		DZA65_RS05125	0.64	+0.1
1,057,839	+		DZA65_RS05125	0.74	-1.4
1,057,955	+				-0.4
1,057,956	-				+0.4
1,058,005	+				+0.6
1,058,026	-				+0.3
1,058,036	+				-1.0
1,058,036	+				+0.1
1,058,037	-				-0.3
1,058,037	-				+0.1
1,058,088	+				+0.1
1,058,135	+				+0.1
1,058,135	+				-1.8
1,058,135	+				-0.7
1,058,135	+				+0.6
1,058,135	+				+1.7
1,058,136	-				-0.4
1,058,201	+				+1.0
1,058,203	+				+1.6
1,058,203	+				+1.3
1,058,203	+				+1.6
1,058,203	+				-0.0
1,058,203	+				+0.2
1,058,203	+				-0.7
1,058,203	+				-0.0
1,058,203	+				+0.9
1,058,203	+				+0.5
1,058,203	+				-0.9
1,058,204	-				+1.6
1,058,204	-				+0.7
1,058,233	-				-0.8
1,058,233	-				-0.2
1,058,233	-				+0.2
1,058,266	+				-1.0
1,058,266	+				-0.2
1,058,266	+				+2.9
1,058,266	+				-0.1
1,058,267	-				-1.6
1,058,267	-				-1.2
1,058,267	-				-0.8
1,058,267	-				+1.3
1,058,267	-				-0.1
1,058,268	+				+0.4
1,058,303	-				+0.2
1,058,308	+				-1.0
1,058,308	+				-0.9
1,058,309	-				-0.4
1,058,309	-				+0.6
1,058,310	+				+1.1
1,058,310	+				+0.1
1,058,310	+				+0.0
1,058,310	+				-0.4
1,058,311	-				-0.4
1,058,356	+				-0.3
1,058,357	-				-0.0
1,058,398	+				-1.8
1,058,398	+				+0.4
1,058,398	+				+0.3
1,058,398	+				+1.1
1,058,398	+				-0.2
1,058,399	-				-0.0
1,058,399	-				-1.1
1,058,419	-				+0.5
1,058,419	-				+1.0
1,058,564	+		DZA65_RS05130	0.37	-1.3
1,058,564	+		DZA65_RS05130	0.37	+0.6
1,058,564	+		DZA65_RS05130	0.37	+1.1
1,058,565	-		DZA65_RS05130	0.37	+1.2
1,058,565	-		DZA65_RS05130	0.37	-0.8
1,058,755	+		DZA65_RS05130	0.76	+0.3
1,058,757	+		DZA65_RS05130	0.77	+0.8
1,058,757	+		DZA65_RS05130	0.77	+3.1
1,058,757	+		DZA65_RS05130	0.77	+0.9
1,058,758	-		DZA65_RS05130	0.77	+0.6
1,058,758	-		DZA65_RS05130	0.77	-0.1
1,058,758	-		DZA65_RS05130	0.77	+0.4
1,058,758	-		DZA65_RS05130	0.77	-0.2
1,058,771	+		DZA65_RS05130	0.80	-1.2
1,058,771	+		DZA65_RS05130	0.80	-0.4
1,058,771	+		DZA65_RS05130	0.80	+0.1
1,058,771	+		DZA65_RS05130	0.80	+0.7
1,058,771	+		DZA65_RS05130	0.80	+0.6
1,058,771	+		DZA65_RS05130	0.80	+0.6
1,058,772	-		DZA65_RS05130	0.80	-0.8
1,058,772	-		DZA65_RS05130	0.80	-0.4
1,058,772	-		DZA65_RS05130	0.80	+1.0
1,058,798	+		DZA65_RS05130	0.85	+2.7
1,058,867	+				-0.4
1,058,867	+				-0.8
1,058,867	+				+1.0
1,058,867	+				-0.0
1,058,868	-				+0.2
1,058,868	-				-1.4
1,058,868	-				-2.2
1,058,868	-				-1.8
1,058,872	-				-0.0
1,058,872	-				-0.7
1,058,872	-				-0.4
1,058,872	-				+0.6
1,058,897	+				+0.3
1,058,897	+				-0.4
1,058,898	-				+1.0
1,058,898	-				-0.0
1,058,898	-				+1.6
1,058,898	-				-0.9
1,058,898	-				+0.7
1,058,898	-				+1.1
1,058,914	-				-0.1
1,058,979	+				-0.2
1,058,979	+				+0.4
1,058,980	-				-0.4
1,058,985	+				-0.2
1,059,037	-				+0.3
1,059,037	-				-0.7
1,059,037	-				+0.3
1,059,222	-		DZA65_RS05135	0.14	+0.9
1,059,295	+		DZA65_RS05135	0.18	+0.3
1,059,295	+		DZA65_RS05135	0.18	-0.4
1,059,296	-		DZA65_RS05135	0.18	-0.2
1,059,332	+		DZA65_RS05135	0.20	-0.2
1,059,391	-		DZA65_RS05135	0.23	+0.4
1,059,412	+		DZA65_RS05135	0.24	-0.1
1,059,412	+		DZA65_RS05135	0.24	-0.8
1,059,412	+		DZA65_RS05135	0.24	-1.4
1,059,417	-		DZA65_RS05135	0.24	-1.9
1,059,440	+		DZA65_RS05135	0.25	+0.3
1,059,441	-		DZA65_RS05135	0.25	-0.1
1,059,450	+		DZA65_RS05135	0.26	-0.1
1,059,563	+		DZA65_RS05135	0.32	-0.4
1,059,564	-		DZA65_RS05135	0.32	+1.1
1,059,564	-		DZA65_RS05135	0.32	+0.6
1,059,564	-		DZA65_RS05135	0.32	+0.6
1,059,616	-		DZA65_RS05135	0.34	+1.5
1,059,616	-		DZA65_RS05135	0.34	-1.4
1,059,707	+		DZA65_RS05135	0.39	+0.1
1,059,715	+		DZA65_RS05135	0.39	+0.1
1,059,715	+		DZA65_RS05135	0.39	+0.0
1,059,715	+		DZA65_RS05135	0.39	+2.0
1,059,746	+		DZA65_RS05135	0.41	+0.2
1,059,746	+		DZA65_RS05135	0.41	-1.1
1,059,810	+		DZA65_RS05135	0.44	-0.7
1,059,819	-		DZA65_RS05135	0.45	+0.6
1,059,819	-		DZA65_RS05135	0.45	-1.8
1,059,819	-		DZA65_RS05135	0.45	-1.6
1,059,819	-		DZA65_RS05135	0.45	-0.7