Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05065

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,043,333	+		DZA65_RS05055	0.76	+0.6
1,043,333	+		DZA65_RS05055	0.76	+1.0
1,043,333	+		DZA65_RS05055	0.76	+0.2
1,043,333	+		DZA65_RS05055	0.76	-0.8
1,043,333	+		DZA65_RS05055	0.76	+0.8
1,043,333	+		DZA65_RS05055	0.76	+0.7
1,043,333	+		DZA65_RS05055	0.76	+0.6
1,043,334	-		DZA65_RS05055	0.76	+0.7
1,043,344	+		DZA65_RS05055	0.77	+0.1
1,043,344	+		DZA65_RS05055	0.77	-1.4
1,043,344	+		DZA65_RS05055	0.77	+1.0
1,043,344	+		DZA65_RS05055	0.77	-0.3
1,043,344	+		DZA65_RS05055	0.77	+0.4
1,043,344	+		DZA65_RS05055	0.77	+0.4
1,043,344	+		DZA65_RS05055	0.77	-0.2
1,043,344	+		DZA65_RS05055	0.77	-0.4
1,043,344	+		DZA65_RS05055	0.77	+0.3
1,043,344	+		DZA65_RS05055	0.77	-0.6
1,043,344	+		DZA65_RS05055	0.77	-0.3
1,043,344	+		DZA65_RS05055	0.77	+0.1
1,043,345	-		DZA65_RS05055	0.77	-0.6
1,043,345	-		DZA65_RS05055	0.77	+0.4
1,043,345	-		DZA65_RS05055	0.77	-1.2
1,043,345	-		DZA65_RS05055	0.77	-1.2
1,043,345	-		DZA65_RS05055	0.77	-0.2
1,043,345	-		DZA65_RS05055	0.77	+0.1
1,043,345	-		DZA65_RS05055	0.77	-0.1
1,043,345	-		DZA65_RS05055	0.77	-0.8
1,043,345	-		DZA65_RS05055	0.77	+0.4
1,043,345	-		DZA65_RS05055	0.77	+1.3
1,043,345	-		DZA65_RS05055	0.77	+0.5
1,043,345	-		DZA65_RS05055	0.77	+0.3
1,043,345	-		DZA65_RS05055	0.77	+0.1
1,043,345	-		DZA65_RS05055	0.77	+0.5
1,043,345	-		DZA65_RS05055	0.77	+0.9
1,043,345	-		DZA65_RS05055	0.77	+0.1
1,043,345	-		DZA65_RS05055	0.77	-2.0
1,043,345	-		DZA65_RS05055	0.77	-0.0
1,043,345	-		DZA65_RS05055	0.77	+0.8
1,043,345	-		DZA65_RS05055	0.77	+1.7
1,043,345	-		DZA65_RS05055	0.77	-1.1
1,043,345	-		DZA65_RS05055	0.77	-0.6
1,043,345	-		DZA65_RS05055	0.77	-0.9
1,043,345	-		DZA65_RS05055	0.77	+0.3
1,043,345	-		DZA65_RS05055	0.77	+2.6
1,043,345	-		DZA65_RS05055	0.77	-0.4
1,043,345	-		DZA65_RS05055	0.77	-0.7
1,043,345	-		DZA65_RS05055	0.77	-1.0
1,043,345	-		DZA65_RS05055	0.77	+0.6
1,043,346	+		DZA65_RS05055	0.77	+0.7
1,043,346	+		DZA65_RS05055	0.77	+1.1
1,043,346	+		DZA65_RS05055	0.77	-0.2
1,043,346	+		DZA65_RS05055	0.77	-0.7
1,043,346	+				-0.0
1,043,346	+		DZA65_RS05055	0.77	+0.7
1,043,346	+		DZA65_RS05055	0.77	-0.9
1,043,346	+		DZA65_RS05055	0.77	+0.3
1,043,346	+		DZA65_RS05055	0.77	-0.1
1,043,347	-		DZA65_RS05055	0.78	+1.6
1,043,347	-		DZA65_RS05055	0.78	+0.2
1,043,347	-				+0.6
1,043,347	-		DZA65_RS05055	0.78	-0.6
1,043,347	-		DZA65_RS05055	0.78	-0.1
1,043,347	-		DZA65_RS05055	0.78	-1.0
1,043,347	-		DZA65_RS05055	0.78	-0.3
1,043,347	-		DZA65_RS05055	0.78	+1.2
1,043,347	-		DZA65_RS05055	0.78	+1.6
1,043,347	-		DZA65_RS05055	0.78	-0.9
1,043,347	-		DZA65_RS05055	0.78	+0.3
1,043,347	-		DZA65_RS05055	0.78	-0.3
1,043,347	-		DZA65_RS05055	0.78	-0.1
1,043,428	+		DZA65_RS05055	0.86	+1.4
1,043,428	+		DZA65_RS05055	0.86	-0.4
1,043,428	+		DZA65_RS05055	0.86	+3.2
1,043,429	-		DZA65_RS05055	0.86	+0.6
1,043,429	-		DZA65_RS05055	0.86	-0.1
1,043,437	+		DZA65_RS05055	0.87	+0.1
1,043,437	+		DZA65_RS05055	0.87	+1.7
1,043,438	-		DZA65_RS05055	0.87	-2.1
1,043,438	-		DZA65_RS05055	0.87	-2.2
1,043,478	+				+0.9
1,043,478	+				-0.7
1,043,478	+				+2.3
1,043,478	+				+0.1
1,043,478	+				+1.2
1,043,478	+				+0.0
1,043,479	-				+2.8
1,043,479	-				+0.2
1,043,479	-				-1.4
1,043,484	+				+0.1
1,043,485	-				-0.1
1,043,534	+				-0.4
1,043,534	+				-2.2
1,043,534	+				+0.6
1,043,534	+				+1.0
1,043,534	+				+1.4
1,043,534	+				+0.4
1,043,535	-				-2.6
1,043,535	-				-2.4
1,043,535	-				-1.0
1,043,535	-				+1.4
1,043,535	-				-0.2
1,043,535	-				+0.1
1,043,535	-				+0.8
1,043,535	-				-0.4
1,043,535	-				+0.6
1,043,535	-				+0.6
1,043,535	-				+0.6
1,043,537	+				+0.9
1,043,537	+				+1.4
1,043,537	+				+0.6
1,043,537	+				-0.8
1,043,570	-				-0.2
1,043,570	-				-0.2
1,043,570	-				-0.5
1,043,570	-				+0.1
1,043,570	-				+1.2
1,043,604	-				-0.6
1,043,604	-				+0.7
1,043,604	-				+0.8
1,043,604	-				-0.3
1,043,636	+		DZA65_RS05060	0.17	-0.3
1,043,636	+		DZA65_RS05060	0.17	-0.6
1,043,636	+		DZA65_RS05060	0.17	+0.4
1,043,637	-		DZA65_RS05060	0.17	+0.8
1,043,637	-		DZA65_RS05060	0.17	-1.0
1,043,637	-		DZA65_RS05060	0.17	+0.2
1,043,695	+		DZA65_RS05060	0.31	+0.2
1,043,695	+		DZA65_RS05060	0.31	+0.6
1,043,695	+		DZA65_RS05060	0.31	+0.6
1,043,696	-		DZA65_RS05060	0.31	-0.6
1,043,696	-		DZA65_RS05060	0.31	-0.0
1,043,696	-		DZA65_RS05060	0.31	-0.8
1,043,696	-		DZA65_RS05060	0.31	+0.2
1,043,696	-		DZA65_RS05060	0.31	+0.8
1,043,696	-		DZA65_RS05060	0.31	+0.5
1,043,706	+		DZA65_RS05060	0.34	+0.3
1,043,707	-				+0.6
1,043,707	-		DZA65_RS05060	0.34	+0.9
1,043,769	-		DZA65_RS05060	0.49	+1.3
1,043,788	-		DZA65_RS05060	0.54	-0.2
1,043,795	+		DZA65_RS05060	0.55	+0.8
1,043,795	+		DZA65_RS05060	0.55	+1.5
1,043,795	+		DZA65_RS05060	0.55	-0.1
1,043,795	+		DZA65_RS05060	0.55	-0.2
1,043,795	+				-0.4
1,043,796	-		DZA65_RS05060	0.55	-0.4
1,043,796	-		DZA65_RS05060	0.55	+0.4
1,043,796	-		DZA65_RS05060	0.55	-2.4
1,043,796	-		DZA65_RS05060	0.55	+0.6
1,043,796	-		DZA65_RS05060	0.55	+0.6
1,043,796	-				+0.1
1,043,796	-		DZA65_RS05060	0.55	-0.2
1,043,796	-				+1.6
1,043,796	-		DZA65_RS05060	0.55	-0.4
1,043,804	+		DZA65_RS05060	0.57	+0.3
1,043,805	-		DZA65_RS05060	0.58	-0.6
1,043,805	-		DZA65_RS05060	0.58	-0.4
1,043,805	-		DZA65_RS05060	0.58	-0.2
1,043,805	-		DZA65_RS05060	0.58	+2.6
1,043,805	-		DZA65_RS05060	0.58	-0.5
1,043,805	-		DZA65_RS05060	0.58	+0.2
1,043,819	+		DZA65_RS05060	0.61	-0.4
1,043,819	+		DZA65_RS05060	0.61	+0.0
1,043,820	-		DZA65_RS05060	0.61	+0.7
1,043,823	+		DZA65_RS05060	0.62	-0.7
1,043,823	+		DZA65_RS05060	0.62	+1.1
1,043,823	+		DZA65_RS05060	0.62	+1.6
1,043,823	+		DZA65_RS05060	0.62	-0.9
1,043,824	-		DZA65_RS05060	0.62	-1.1
1,043,824	-		DZA65_RS05060	0.62	+0.3
1,043,824	-		DZA65_RS05060	0.62	-0.0
1,043,824	-		DZA65_RS05060	0.62	+0.4
1,043,824	-		DZA65_RS05060	0.62	+1.3
1,043,824	-		DZA65_RS05060	0.62	-0.2
1,043,825	+		DZA65_RS05060	0.63	-0.0
1,043,825	+		DZA65_RS05060	0.63	-0.9
1,043,825	+		DZA65_RS05060	0.63	+1.6
1,043,826	-		DZA65_RS05060	0.63	-0.2
1,044,001	-				-1.8
1,044,001	-				-0.8
1,044,001	-				+0.9
1,044,003	+				+0.2
1,044,007	+				-1.1
1,044,010	+				-0.3
1,044,020	+				+0.7
1,044,045	+				-0.0
1,044,045	+				-1.4
1,044,045	+				-0.0
1,044,045	+				+0.9
1,044,045	+				-1.4
1,044,045	+				-0.8
1,044,045	+				-2.4
1,044,046	-				-0.2
1,044,046	-				-0.4
1,044,046	-				-0.3
1,044,048	+				+0.6
1,044,048	+				-0.6
1,044,048	+				-1.7
1,044,049	-				-0.8
1,044,049	-				-0.9
1,044,073	-				+1.0
1,044,094	+				-1.0
1,044,094	+				+0.1
1,044,095	-				-0.2
1,044,108	+				+0.3
1,044,108	+				-0.9
1,044,109	-				-0.1
1,044,109	-				+0.6
1,044,114	+				-0.2
1,044,114	+				+0.1
1,044,115	-				+0.8
1,044,129	+				-1.0
1,044,129	+				-1.0
1,044,130	-				-0.0
1,044,130	-				-0.6
1,044,167	+				-1.2
1,044,167	+				-2.0
1,044,167	+				-0.2
1,044,167	+				-0.5
1,044,167	+				-0.2
1,044,168	-				+0.6
1,044,168	-				-0.0
1,044,192	+				+0.6
1,044,192	+				-0.4
1,044,193	-				+1.3
1,044,193	-				+0.6
1,044,193	-				+0.6
1,044,193	-				-1.2
1,044,279	-				+1.0
1,044,287	+				+1.3
1,044,301	+				-0.3
1,044,331	+				-0.7
1,044,361	-		DZA65_RS05065	0.11	-0.4
1,044,361	-		DZA65_RS05065	0.11	-0.3
1,044,382	+		DZA65_RS05065	0.16	-0.9
1,044,382	+		DZA65_RS05065	0.16	+0.1
1,044,382	+		DZA65_RS05065	0.16	-0.7
1,044,382	+		DZA65_RS05065	0.16	-1.0
1,044,383	-		DZA65_RS05065	0.17	-0.6
1,044,383	-		DZA65_RS05065	0.17	-0.0
1,044,383	-		DZA65_RS05065	0.17	+1.2
1,044,383	-		DZA65_RS05065	0.17	-0.9
1,044,383	-		DZA65_RS05065	0.17	+1.0
1,044,383	-		DZA65_RS05065	0.17	+0.3
1,044,385	-		DZA65_RS05065	0.17	+0.4
1,044,407	+		DZA65_RS05065	0.23	-0.4
1,044,407	+		DZA65_RS05065	0.23	+0.0
1,044,407	+		DZA65_RS05065	0.23	-0.2
1,044,407	+		DZA65_RS05065	0.23	+0.2
1,044,407	+		DZA65_RS05065	0.23	-1.2
1,044,408	-		DZA65_RS05065	0.23	-1.6
1,044,408	-		DZA65_RS05065	0.23	+1.6
1,044,408	-		DZA65_RS05065	0.23	+0.6
1,044,408	-		DZA65_RS05065	0.23	-1.0
1,044,408	-		DZA65_RS05065	0.23	+0.1
1,044,437	-		DZA65_RS05065	0.30	+0.1
1,044,475	-		DZA65_RS05065	0.40	+0.1
1,044,639	+		DZA65_RS05065	0.80	-0.2
1,044,639	+		DZA65_RS05065	0.80	-0.4
1,044,639	+		DZA65_RS05065	0.80	-0.2
1,044,639	+		DZA65_RS05065	0.80	-2.0
1,044,639	+		DZA65_RS05065	0.80	-1.1
1,044,639	+		DZA65_RS05065	0.80	+0.2
1,044,639	+		DZA65_RS05065	0.80	-0.6
1,044,639	+		DZA65_RS05065	0.80	-1.7
1,044,640	-		DZA65_RS05065	0.81	+0.3
1,044,640	-		DZA65_RS05065	0.81	-1.4
1,044,640	-		DZA65_RS05065	0.81	+1.0
1,044,640	-		DZA65_RS05065	0.81	-0.2
1,044,640	-		DZA65_RS05065	0.81	+0.6
1,044,640	-		DZA65_RS05065	0.81	-1.6
1,044,640	-		DZA65_RS05065	0.81	-1.0
1,044,640	-		DZA65_RS05065	0.81	+0.8
1,044,640	-		DZA65_RS05065	0.81	+1.1
1,044,643	+		DZA65_RS05065	0.81	-0.3
1,044,643	+		DZA65_RS05065	0.81	+1.6
1,044,643	+		DZA65_RS05065	0.81	-1.6
1,044,643	+		DZA65_RS05065	0.81	-0.4
1,044,643	+		DZA65_RS05065	0.81	+1.6
1,044,643	+		DZA65_RS05065	0.81	+0.4
1,044,643	+		DZA65_RS05065	0.81	-0.1
1,044,643	+		DZA65_RS05065	0.81	-0.4
1,044,643	+		DZA65_RS05065	0.81	-0.6
1,044,643	+		DZA65_RS05065	0.81	-1.2
1,044,643	+		DZA65_RS05065	0.81	+0.3
1,044,643	+		DZA65_RS05065	0.81	+1.0
1,044,643	+				+0.6
1,044,643	+		DZA65_RS05065	0.81	-2.0
1,044,643	+		DZA65_RS05065	0.81	-0.2
1,044,643	+		DZA65_RS05065	0.81	+0.1
1,044,643	+		DZA65_RS05065	0.81	-0.9
1,044,643	+		DZA65_RS05065	0.81	-0.8
1,044,644	-		DZA65_RS05065	0.82	-0.0
1,044,644	-		DZA65_RS05065	0.82	+1.0
1,044,644	-		DZA65_RS05065	0.82	-3.5
1,044,644	-		DZA65_RS05065	0.82	-0.4
1,044,644	-		DZA65_RS05065	0.82	+0.6
1,044,644	-		DZA65_RS05065	0.82	+0.4
1,044,644	-		DZA65_RS05065	0.82	-0.9
1,044,644	-		DZA65_RS05065	0.82	-1.8
1,044,644	-		DZA65_RS05065	0.82	-0.2
1,044,644	-		DZA65_RS05065	0.82	-0.0
1,044,644	-		DZA65_RS05065	0.82	-0.7
1,044,644	-		DZA65_RS05065	0.82	-0.2
1,044,644	-		DZA65_RS05065	0.82	-0.6
1,044,644	-		DZA65_RS05065	0.82	-1.8
1,044,644	-		DZA65_RS05065	0.82	+1.8
1,044,644	-		DZA65_RS05065	0.82	-0.6
1,044,644	-		DZA65_RS05065	0.82	+0.4
1,044,644	-		DZA65_RS05065	0.82	-1.9
1,044,644	-		DZA65_RS05065	0.82	+0.8
1,044,644	-		DZA65_RS05065	0.82	-1.4
1,044,644	-		DZA65_RS05065	0.82	+0.4
1,044,644	-		DZA65_RS05065	0.82	+0.1
1,044,644	-		DZA65_RS05065	0.82	+0.1
1,044,644	-		DZA65_RS05065	0.82	+0.4
1,044,644	-		DZA65_RS05065	0.82	-0.0
1,044,644	-		DZA65_RS05065	0.82	-0.8
1,044,652	+		DZA65_RS05065	0.84	-0.3
1,044,652	+		DZA65_RS05065	0.84	+0.6
1,044,652	+		DZA65_RS05065	0.84	+0.0
1,044,653	-		DZA65_RS05065	0.84	-1.3
1,044,653	-		DZA65_RS05065	0.84	-0.3
1,044,653	-		DZA65_RS05065	0.84	-0.3
1,044,653	-		DZA65_RS05065	0.84	+1.1
1,044,653	-		DZA65_RS05065	0.84	-1.0
1,044,657	+		DZA65_RS05065	0.85	-0.2
1,044,658	-		DZA65_RS05065	0.85	-1.0
1,044,660	+		DZA65_RS05065	0.86	-2.3
1,044,661	-		DZA65_RS05065	0.86	+0.6
1,044,681	+				+0.2
1,044,682	-				-1.4
1,044,766	+				-0.2
1,044,767	-				+0.7
1,044,767	-				-1.4
1,044,860	+		DZA65_RS05070	0.14	-0.4
1,044,868	-		DZA65_RS05070	0.15	+1.6
1,044,959	+		DZA65_RS05070	0.24	-1.8
1,045,040	+		DZA65_RS05070	0.33	-0.5
1,045,040	+		DZA65_RS05070	0.33	-0.5
1,045,040	+		DZA65_RS05070	0.33	+1.4
1,045,041	-		DZA65_RS05070	0.33	-0.8
1,045,041	-		DZA65_RS05070	0.33	-0.0
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1,045,122	+		DZA65_RS05070	0.41	+1.2
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1,045,124	+		DZA65_RS05070	0.41	+1.1
1,045,125	-		DZA65_RS05070	0.41	+0.8
1,045,179	+		DZA65_RS05070	0.47	+0.1
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1,045,191	-		DZA65_RS05070	0.48	+0.1
1,045,191	-		DZA65_RS05070	0.48	-0.0
1,045,215	+		DZA65_RS05070	0.50	-0.1
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1,045,328	+		DZA65_RS05070	0.62	+0.9
1,045,329	-		DZA65_RS05070	0.62	-1.0
1,045,329	-		DZA65_RS05070	0.62	-0.4
1,045,329	-		DZA65_RS05070	0.62	-0.9
1,045,329	-		DZA65_RS05070	0.62	+0.1
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1,045,344	+		DZA65_RS05070	0.63	-0.6
1,045,345	-		DZA65_RS05070	0.64	+0.1
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1,045,345	-		DZA65_RS05070	0.64	-0.5
1,045,380	+		DZA65_RS05070	0.67	-1.1
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1,045,380	+		DZA65_RS05070	0.67	-0.4
1,045,381	-		DZA65_RS05070	0.67	-1.3
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1,045,382	+		DZA65_RS05070	0.67	-0.1
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1,045,382	+		DZA65_RS05070	0.67	-0.1
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1,045,383	-		DZA65_RS05070	0.67	-0.5
1,045,383	-		DZA65_RS05070	0.67	+1.1
1,045,396	+		DZA65_RS05070	0.69	-0.1
1,045,397	-		DZA65_RS05070	0.69	-1.7
1,045,397	-		DZA65_RS05070	0.69	+1.4
1,045,441	+		DZA65_RS05070	0.73	-2.6
1,045,441	+		DZA65_RS05070	0.73	-0.6
1,045,441	+		DZA65_RS05070	0.73	-0.3
1,045,441	+		DZA65_RS05070	0.73	+2.3
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1,045,441	+		DZA65_RS05070	0.73	-0.1
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1,045,441	+		DZA65_RS05070	0.73	-0.6
1,045,441	+		DZA65_RS05070	0.73	+0.1
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1,045,441	+		DZA65_RS05070	0.73	-1.0
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1,045,442	-		DZA65_RS05070	0.73	-1.3
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1,045,445	+		DZA65_RS05070	0.74	-0.8
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1,045,446	-		DZA65_RS05070	0.74	-2.2
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1,045,446	-		DZA65_RS05070	0.74	-0.0
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1,045,446	-		DZA65_RS05070	0.74	-0.0
1,045,446	-		DZA65_RS05070	0.74	-0.1
1,045,446	-				+3.6
1,045,446	-		DZA65_RS05070	0.74	-1.3
1,045,450	-		DZA65_RS05070	0.74	-0.8
1,045,450	-		DZA65_RS05070	0.74	+0.5
1,045,450	-		DZA65_RS05070	0.74	-1.2
1,045,450	-		DZA65_RS05070	0.74	+0.1
1,045,626	+				-0.7
1,045,626	+				-0.8
1,045,627	-				-2.4
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1,045,650	+				+1.0
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1,045,650	+				+0.6
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1,045,687	-				-0.4
1,045,687	-				-1.0
1,045,687	-				+0.5