Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05050

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,041,392	+		DZA65_RS05045	0.78	-0.8
1,041,424	-		DZA65_RS05045	0.79	-2.2
1,041,424	-		DZA65_RS05045	0.79	+1.5
1,041,461	+		DZA65_RS05045	0.80	+0.3
1,041,461	+		DZA65_RS05045	0.80	-0.8
1,041,461	+		DZA65_RS05045	0.80	-0.4
1,041,462	-		DZA65_RS05045	0.80	-0.9
1,041,462	-		DZA65_RS05045	0.80	+0.6
1,041,464	+		DZA65_RS05045	0.80	-0.4
1,041,464	+		DZA65_RS05045	0.80	-0.4
1,041,465	-		DZA65_RS05045	0.80	+0.5
1,041,465	-		DZA65_RS05045	0.80	-0.7
1,041,476	+		DZA65_RS05045	0.81	-1.0
1,041,476	+		DZA65_RS05045	0.81	+0.4
1,041,477	-		DZA65_RS05045	0.81	-2.8
1,041,477	-		DZA65_RS05045	0.81	-0.3
1,041,477	-		DZA65_RS05045	0.81	+0.6
1,041,477	-		DZA65_RS05045	0.81	-1.0
1,041,496	-		DZA65_RS05045	0.82	-0.9
1,041,511	+		DZA65_RS05045	0.82	+0.6
1,041,511	+		DZA65_RS05045	0.82	-0.1
1,041,512	-				+0.6
1,041,512	-		DZA65_RS05045	0.82	+1.0
1,041,512	-		DZA65_RS05045	0.82	+1.9
1,041,512	-		DZA65_RS05045	0.82	+1.1
1,041,536	+		DZA65_RS05045	0.83	+0.7
1,041,548	+		DZA65_RS05045	0.83	+0.9
1,041,567	+		DZA65_RS05045	0.84	+0.1
1,041,567	+		DZA65_RS05045	0.84	-0.4
1,041,567	+		DZA65_RS05045	0.84	+0.1
1,041,567	+		DZA65_RS05045	0.84	-1.4
1,041,568	-		DZA65_RS05045	0.84	-0.2
1,041,568	-		DZA65_RS05045	0.84	-1.0
1,041,596	+		DZA65_RS05045	0.85	-0.9
1,041,597	-		DZA65_RS05045	0.85	-0.8
1,041,597	-		DZA65_RS05045	0.85	+0.1
1,041,642	+		DZA65_RS05045	0.87	+0.1
1,041,653	-		DZA65_RS05045	0.87	-0.4
1,041,725	-		DZA65_RS05045	0.90	+0.1
1,041,725	-		DZA65_RS05045	0.90	-2.4
1,041,725	-		DZA65_RS05045	0.90	+0.8
1,041,776	+				-0.0
1,041,777	-				+0.6
1,041,777	-				+1.0
1,041,777	-				+0.9
1,041,795	+				-1.0
1,041,796	-				+0.6
1,041,796	-				-0.4
1,041,796	-				-1.4
1,041,796	-				-1.2
1,041,797	+				+1.2
1,041,797	+				-0.8
1,041,797	+				+0.9
1,041,862	-				-0.7
1,041,926	+				+0.7
1,041,926	+				+0.9
1,041,927	-				-0.3
1,041,976	+				-0.6
1,041,976	+				+0.1
1,041,976	+				+0.4
1,041,976	+				+0.6
1,041,977	-				-0.9
1,041,977	-				+0.1
1,041,977	-				-0.0
1,041,988	+				-0.4
1,041,989	-				-0.6
1,041,989	-				+1.0
1,041,989	-				-1.4
1,041,989	-				-0.7
1,041,989	-				+2.3
1,042,009	+				-0.0
1,042,009	+				-0.4
1,042,009	+				-1.3
1,042,009	+				+1.6
1,042,010	-				+0.6
1,042,010	-				+0.4
1,042,010	-				+0.6
1,042,010	-				-0.5
1,042,010	-				-0.6
1,042,010	-				-0.2
1,042,010	-				-0.0
1,042,012	+				-0.1
1,042,013	-				+0.2
1,042,013	-				-0.4
1,042,013	-				-0.7
1,042,013	-				-1.4
1,042,071	+		DZA65_RS05050	0.14	+0.3
1,042,071	+		DZA65_RS05050	0.14	+0.2
1,042,072	-		DZA65_RS05050	0.14	-0.4
1,042,188	+		DZA65_RS05050	0.41	-1.0
1,042,189	-		DZA65_RS05050	0.41	+1.1
1,042,189	-		DZA65_RS05050	0.41	+0.6
1,042,210	+		DZA65_RS05050	0.46	-0.8
1,042,210	+		DZA65_RS05050	0.46	+0.6
1,042,210	+		DZA65_RS05050	0.46	+2.0
1,042,211	-		DZA65_RS05050	0.46	+0.2
1,042,285	+		DZA65_RS05050	0.63	+0.6
1,042,285	+		DZA65_RS05050	0.63	+0.3
1,042,285	+		DZA65_RS05050	0.63	-0.5
1,042,286	-		DZA65_RS05050	0.64	-1.3
1,042,311	-		DZA65_RS05050	0.69	+0.9
1,042,321	+		DZA65_RS05050	0.72	-1.1
1,042,323	+		DZA65_RS05050	0.72	+0.6
1,042,323	+		DZA65_RS05050	0.72	-0.2
1,042,323	+		DZA65_RS05050	0.72	+0.6
1,042,324	-		DZA65_RS05050	0.72	+1.1
1,042,324	-		DZA65_RS05050	0.72	-1.0
1,042,324	-		DZA65_RS05050	0.72	+0.4
1,042,331	+		DZA65_RS05050	0.74	+0.7
1,042,331	+		DZA65_RS05050	0.74	+0.9
1,042,331	+		DZA65_RS05050	0.74	+0.5
1,042,331	+		DZA65_RS05050	0.74	+1.4
1,042,331	+		DZA65_RS05050	0.74	+0.2
1,042,331	+		DZA65_RS05050	0.74	+0.2
1,042,332	-		DZA65_RS05050	0.74	-0.8
1,042,332	-		DZA65_RS05050	0.74	+0.6
1,042,332	-		DZA65_RS05050	0.74	+2.3
1,042,332	-		DZA65_RS05050	0.74	-0.4
1,042,332	-		DZA65_RS05050	0.74	+0.4
1,042,332	-		DZA65_RS05050	0.74	-0.1
1,042,332	-		DZA65_RS05050	0.74	-0.4
1,042,333	+		DZA65_RS05050	0.75	-2.6
1,042,333	+		DZA65_RS05050	0.75	-0.4
1,042,333	+		DZA65_RS05050	0.75	+0.6
1,042,393	+		DZA65_RS05050	0.89	+1.6
1,042,393	+		DZA65_RS05050	0.89	+0.8
1,042,393	+		DZA65_RS05050	0.89	+0.5
1,042,394	-		DZA65_RS05050	0.89	-0.2
1,042,394	-		DZA65_RS05050	0.89	-0.3
1,042,394	-		DZA65_RS05050	0.89	+0.5
1,042,394	-		DZA65_RS05050	0.89	+1.0
1,042,394	-		DZA65_RS05050	0.89	+0.7
1,042,394	-		DZA65_RS05050	0.89	-0.3
1,042,394	-		DZA65_RS05050	0.89	-2.9
1,042,394	-		DZA65_RS05050	0.89	+1.1
1,042,394	-		DZA65_RS05050	0.89	-1.4
1,042,394	-		DZA65_RS05050	0.89	+1.0
1,042,394	-		DZA65_RS05050	0.89	+1.6
1,042,399	+				-0.6
1,042,399	+				+0.6
1,042,399	+				-2.2
1,042,400	-				-0.0
1,042,400	-				-0.1
1,042,400	-				+0.2
1,042,400	-				+0.9
1,042,400	-				-1.4
1,042,400	-				+2.6
1,042,419	+				+0.1
1,042,420	-				+1.3
1,042,430	+				+0.8
1,042,430	+				-0.7
1,042,431	-				-0.3
1,042,431	-				+0.5
1,042,431	-				-0.3
1,042,431	-				+0.8
1,042,431	-				+0.2
1,042,440	-				-2.8
1,042,463	+				-0.6
1,042,463	+				+0.2
1,042,464	-				-0.4
1,042,464	-				-1.9
1,042,500	+				-1.4
1,042,501	-				-1.4
1,042,501	-				+0.9
1,042,501	-				-0.9
1,042,501	-				+0.1
1,042,501	-				-0.9
1,042,501	-				+1.0
1,042,501	-				+1.6
1,042,502	+				+1.9
1,042,502	+				-2.0
1,042,502	+				+0.6
1,042,502	+				-0.0
1,042,502	+				+0.7
1,042,502	+				-0.8
1,042,502	+				-1.2
1,042,504	+				-1.8
1,042,504	+				-1.3
1,042,505	-				+1.1
1,042,505	-				+1.6
1,042,506	+				-0.2
1,042,506	+				-1.4
1,042,506	+				+0.1
1,042,506	+				-0.1
1,042,507	-				-0.3
1,042,522	-				+0.1
1,042,540	-				-0.4
1,042,551	-				+0.3
1,042,551	-				-0.5
1,042,551	-				+0.6
1,042,583	+				-1.9
1,042,583	+				+0.6
1,042,583	+				-2.1
1,042,584	-				+0.6
1,042,584	-				+0.1
1,042,584	-				+1.6
1,042,584	-				-0.9
1,042,584	-				-0.7
1,042,584	-				+0.7
1,042,584	-				+0.9
1,042,584	-				-1.0
1,042,584	-				+0.6
1,042,585	+				+0.5
1,042,585	+				+1.2
1,042,585	+				-0.7
1,042,585	+				-0.8
1,042,586	-				+0.4
1,042,586	-				-0.8
1,042,586	-				+0.0
1,042,586	-				-0.2
1,042,586	-				-0.1
1,042,586	-				-0.7
1,042,586	-				-0.4
1,042,586	-				-2.2
1,042,586	-				-0.1
1,042,586	-				-0.0
1,042,603	+				-0.1
1,042,603	+				+0.0
1,042,613	+				+0.2
1,042,613	+				+0.3
1,042,632	+				-2.4
1,042,633	-				-0.6
1,042,638	+				+1.0
1,042,647	+				-1.3
1,042,648	-				-0.9
1,042,648	-				-1.7
1,042,671	+				+0.2
1,042,671	+				-0.8
1,042,671	+				-0.0
1,042,671	+				+0.7
1,042,671	+				-1.2
1,042,671	+				-1.3
1,042,671	+				+0.9
1,042,671	+				-0.6
1,042,671	+				+0.5
1,042,671	+				-0.6
1,042,671	+				+0.1
1,042,671	+				+0.6
1,042,672	-				-0.1
1,042,672	-				-1.7
1,042,672	-				-2.1
1,042,672	-				-0.4
1,042,672	-				+0.8
1,042,672	-				+0.6
1,042,672	-				+0.4
1,042,672	-				-1.4
1,042,672	-				-0.2
1,042,672	-				+1.4
1,042,672	-				+0.4
1,042,672	-				+0.8
1,042,672	-				-0.1
1,042,672	-				-1.0
1,042,672	-				-1.0
1,042,672	-				-0.0
1,042,695	+		DZA65_RS05055	0.11	-1.8
1,042,695	+		DZA65_RS05055	0.11	+1.0
1,042,703	-		DZA65_RS05055	0.12	-0.1
1,042,703	-		DZA65_RS05055	0.12	-1.0
1,042,712	+		DZA65_RS05055	0.13	-0.9
1,042,712	+		DZA65_RS05055	0.13	+1.0
1,042,712	+		DZA65_RS05055	0.13	+0.5
1,042,712	+		DZA65_RS05055	0.13	-1.2
1,042,713	-		DZA65_RS05055	0.13	-1.0
1,042,713	-		DZA65_RS05055	0.13	-0.7
1,042,808	+		DZA65_RS05055	0.23	+1.3
1,042,808	+		DZA65_RS05055	0.23	-0.0
1,042,808	+		DZA65_RS05055	0.23	+0.6
1,042,809	-		DZA65_RS05055	0.23	-1.4
1,042,809	-		DZA65_RS05055	0.23	-0.0
1,042,809	-		DZA65_RS05055	0.23	+1.0
1,042,809	-		DZA65_RS05055	0.23	-2.6
1,042,920	+		DZA65_RS05055	0.34	-1.7
1,042,921	-		DZA65_RS05055	0.34	-1.1
1,042,921	-		DZA65_RS05055	0.34	-0.3
1,042,921	-		DZA65_RS05055	0.34	+0.9
1,042,999	+		DZA65_RS05055	0.42	-0.7
1,042,999	+		DZA65_RS05055	0.42	-1.3
1,042,999	+		DZA65_RS05055	0.42	+0.6
1,042,999	+		DZA65_RS05055	0.42	-1.4
1,042,999	+		DZA65_RS05055	0.42	-0.4
1,042,999	+		DZA65_RS05055	0.42	+1.0
1,042,999	+		DZA65_RS05055	0.42	-0.1
1,043,000	-		DZA65_RS05055	0.42	+1.6
1,043,000	-		DZA65_RS05055	0.42	-0.8
1,043,000	-		DZA65_RS05055	0.42	-0.0
1,043,000	-		DZA65_RS05055	0.42	+0.7
1,043,000	-		DZA65_RS05055	0.42	+0.4
1,043,000	-		DZA65_RS05055	0.42	+0.3
1,043,001	+		DZA65_RS05055	0.42	-1.4
1,043,002	-		DZA65_RS05055	0.43	+0.8
1,043,045	-		DZA65_RS05055	0.47	-0.7
1,043,047	+		DZA65_RS05055	0.47	+0.7
1,043,047	+		DZA65_RS05055	0.47	-0.8
1,043,047	+		DZA65_RS05055	0.47	+1.6
1,043,047	+		DZA65_RS05055	0.47	-1.1
1,043,048	-		DZA65_RS05055	0.47	-0.3
1,043,048	-		DZA65_RS05055	0.47	-0.3
1,043,048	-		DZA65_RS05055	0.47	-0.6
1,043,048	-				-0.0
1,043,048	-		DZA65_RS05055	0.47	+0.7
1,043,048	-		DZA65_RS05055	0.47	+0.6
1,043,048	-		DZA65_RS05055	0.47	+0.9
1,043,048	-		DZA65_RS05055	0.47	-0.7
1,043,048	-		DZA65_RS05055	0.47	+0.6
1,043,048	-		DZA65_RS05055	0.47	+0.0
1,043,048	-		DZA65_RS05055	0.47	+0.4
1,043,048	-		DZA65_RS05055	0.47	-0.8
1,043,087	+		DZA65_RS05055	0.51	+0.1
1,043,131	+		DZA65_RS05055	0.56	+0.2
1,043,131	+		DZA65_RS05055	0.56	-0.1
1,043,132	-		DZA65_RS05055	0.56	-0.2
1,043,132	-		DZA65_RS05055	0.56	+0.9
1,043,132	-		DZA65_RS05055	0.56	-0.9
1,043,152	+		DZA65_RS05055	0.58	-0.8
1,043,152	+		DZA65_RS05055	0.58	-2.0
1,043,152	+		DZA65_RS05055	0.58	-0.0
1,043,153	-		DZA65_RS05055	0.58	-0.0
1,043,200	+		DZA65_RS05055	0.63	+0.1
1,043,211	+		DZA65_RS05055	0.64	-1.8
1,043,212	-		DZA65_RS05055	0.64	-2.0
1,043,232	+		DZA65_RS05055	0.66	-0.6
1,043,232	+		DZA65_RS05055	0.66	-1.8
1,043,232	+		DZA65_RS05055	0.66	+0.1
1,043,233	-		DZA65_RS05055	0.66	-0.8
1,043,233	-		DZA65_RS05055	0.66	-0.0
1,043,239	+		DZA65_RS05055	0.67	+0.6
1,043,239	+		DZA65_RS05055	0.67	+0.3
1,043,239	+		DZA65_RS05055	0.67	+0.2
1,043,240	-		DZA65_RS05055	0.67	-0.1
1,043,275	-		DZA65_RS05055	0.70	-0.0
1,043,294	+		DZA65_RS05055	0.72	+0.3
1,043,295	-		DZA65_RS05055	0.72	-0.8
1,043,333	+		DZA65_RS05055	0.76	+0.6
1,043,333	+		DZA65_RS05055	0.76	+1.0
1,043,333	+		DZA65_RS05055	0.76	+0.2
1,043,333	+		DZA65_RS05055	0.76	-0.8
1,043,333	+		DZA65_RS05055	0.76	+0.8
1,043,333	+		DZA65_RS05055	0.76	+0.7
1,043,333	+		DZA65_RS05055	0.76	+0.6
1,043,334	-		DZA65_RS05055	0.76	+0.7
1,043,344	+		DZA65_RS05055	0.77	+0.1
1,043,344	+		DZA65_RS05055	0.77	-1.4
1,043,344	+		DZA65_RS05055	0.77	+1.0
1,043,344	+		DZA65_RS05055	0.77	-0.3
1,043,344	+		DZA65_RS05055	0.77	+0.4
1,043,344	+		DZA65_RS05055	0.77	+0.4
1,043,344	+		DZA65_RS05055	0.77	-0.2
1,043,344	+		DZA65_RS05055	0.77	-0.4
1,043,344	+		DZA65_RS05055	0.77	+0.3
1,043,344	+		DZA65_RS05055	0.77	-0.6
1,043,344	+		DZA65_RS05055	0.77	-0.3
1,043,344	+		DZA65_RS05055	0.77	+0.1
1,043,345	-		DZA65_RS05055	0.77	-0.6
1,043,345	-		DZA65_RS05055	0.77	+0.4
1,043,345	-		DZA65_RS05055	0.77	-1.2
1,043,345	-		DZA65_RS05055	0.77	-1.2
1,043,345	-		DZA65_RS05055	0.77	-0.2
1,043,345	-		DZA65_RS05055	0.77	+0.1
1,043,345	-		DZA65_RS05055	0.77	-0.1
1,043,345	-		DZA65_RS05055	0.77	-0.8
1,043,345	-		DZA65_RS05055	0.77	+0.4
1,043,345	-		DZA65_RS05055	0.77	+1.3
1,043,345	-		DZA65_RS05055	0.77	+0.5
1,043,345	-		DZA65_RS05055	0.77	+0.3
1,043,345	-		DZA65_RS05055	0.77	+0.1
1,043,345	-		DZA65_RS05055	0.77	+0.5
1,043,345	-		DZA65_RS05055	0.77	+0.9
1,043,345	-		DZA65_RS05055	0.77	+0.1
1,043,345	-		DZA65_RS05055	0.77	-2.0
1,043,345	-		DZA65_RS05055	0.77	-0.0
1,043,345	-		DZA65_RS05055	0.77	+0.8
1,043,345	-		DZA65_RS05055	0.77	+1.7
1,043,345	-		DZA65_RS05055	0.77	-1.1
1,043,345	-		DZA65_RS05055	0.77	-0.6
1,043,345	-		DZA65_RS05055	0.77	-0.9
1,043,345	-		DZA65_RS05055	0.77	+0.3
1,043,345	-		DZA65_RS05055	0.77	+2.6
1,043,345	-		DZA65_RS05055	0.77	-0.4
1,043,345	-		DZA65_RS05055	0.77	-0.7
1,043,345	-		DZA65_RS05055	0.77	-1.0
1,043,345	-		DZA65_RS05055	0.77	+0.6
1,043,346	+		DZA65_RS05055	0.77	+0.7
1,043,346	+		DZA65_RS05055	0.77	+1.1
1,043,346	+		DZA65_RS05055	0.77	-0.2
1,043,346	+		DZA65_RS05055	0.77	-0.7
1,043,346	+				-0.0
1,043,346	+		DZA65_RS05055	0.77	+0.7
1,043,346	+		DZA65_RS05055	0.77	-0.9
1,043,346	+		DZA65_RS05055	0.77	+0.3
1,043,346	+		DZA65_RS05055	0.77	-0.1
1,043,347	-		DZA65_RS05055	0.78	+1.6
1,043,347	-		DZA65_RS05055	0.78	+0.2
1,043,347	-				+0.6
1,043,347	-		DZA65_RS05055	0.78	-0.6
1,043,347	-		DZA65_RS05055	0.78	-0.1
1,043,347	-		DZA65_RS05055	0.78	-1.0
1,043,347	-		DZA65_RS05055	0.78	-0.3
1,043,347	-		DZA65_RS05055	0.78	+1.2
1,043,347	-		DZA65_RS05055	0.78	+1.6
1,043,347	-		DZA65_RS05055	0.78	-0.9
1,043,347	-		DZA65_RS05055	0.78	+0.3
1,043,347	-		DZA65_RS05055	0.78	-0.3
1,043,347	-		DZA65_RS05055	0.78	-0.1
1,043,428	+		DZA65_RS05055	0.86	+1.4
1,043,428	+		DZA65_RS05055	0.86	-0.4
1,043,428	+		DZA65_RS05055	0.86	+3.2
1,043,429	-		DZA65_RS05055	0.86	+0.6
1,043,429	-		DZA65_RS05055	0.86	-0.1
1,043,437	+		DZA65_RS05055	0.87	+0.1
1,043,437	+		DZA65_RS05055	0.87	+1.7
1,043,438	-		DZA65_RS05055	0.87	-2.1
1,043,438	-		DZA65_RS05055	0.87	-2.2