Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04840

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,001,994	+		DZA65_RS04830	0.57	-0.2
1,001,994	+		DZA65_RS04830	0.57	+1.1
1,002,042	-		DZA65_RS04830	0.60	-1.3
1,002,067	-		DZA65_RS04830	0.61	+0.3
1,002,105	-		DZA65_RS04830	0.63	+1.4
1,002,179	+		DZA65_RS04830	0.67	-0.4
1,002,180	-		DZA65_RS04830	0.68	-0.2
1,002,180	-		DZA65_RS04830	0.68	+0.2
1,002,180	-		DZA65_RS04830	0.68	-1.7
1,002,180	-		DZA65_RS04830	0.68	-1.0
1,002,234	+		DZA65_RS04830	0.71	-0.5
1,002,234	+		DZA65_RS04830	0.71	+0.0
1,002,234	+		DZA65_RS04830	0.71	+0.3
1,002,234	+		DZA65_RS04830	0.71	-0.4
1,002,234	+		DZA65_RS04830	0.71	+0.5
1,002,234	+		DZA65_RS04830	0.71	-0.9
1,002,234	+		DZA65_RS04830	0.71	-0.5
1,002,234	+		DZA65_RS04830	0.71	+0.3
1,002,234	+		DZA65_RS04830	0.71	+0.4
1,002,234	+		DZA65_RS04830	0.71	+1.6
1,002,234	+		DZA65_RS04830	0.71	+0.4
1,002,234	+		DZA65_RS04830	0.71	+0.1
1,002,235	-		DZA65_RS04830	0.71	+0.9
1,002,235	-		DZA65_RS04830	0.71	+1.2
1,002,235	-		DZA65_RS04830	0.71	-0.6
1,002,235	-		DZA65_RS04830	0.71	+1.0
1,002,235	-		DZA65_RS04830	0.71	-0.2
1,002,235	-		DZA65_RS04830	0.71	-0.6
1,002,235	-		DZA65_RS04830	0.71	-0.1
1,002,235	-		DZA65_RS04830	0.71	-0.3
1,002,235	-		DZA65_RS04830	0.71	+3.4
1,002,235	-		DZA65_RS04830	0.71	+0.2
1,002,235	-		DZA65_RS04830	0.71	+0.3
1,002,235	-		DZA65_RS04830	0.71	-1.2
1,002,235	-		DZA65_RS04830	0.71	+1.2
1,002,235	-		DZA65_RS04830	0.71	-0.3
1,002,235	-		DZA65_RS04830	0.71	-0.2
1,002,235	-		DZA65_RS04830	0.71	+0.1
1,002,235	-		DZA65_RS04830	0.71	+1.8
1,002,235	-		DZA65_RS04830	0.71	-0.2
1,002,235	-		DZA65_RS04830	0.71	-0.2
1,002,235	-		DZA65_RS04830	0.71	+1.4
1,002,235	-		DZA65_RS04830	0.71	-1.7
1,002,235	-		DZA65_RS04830	0.71	-1.5
1,002,235	-		DZA65_RS04830	0.71	+0.8
1,002,235	-		DZA65_RS04830	0.71	-1.0
1,002,235	-		DZA65_RS04830	0.71	+0.6
1,002,235	-		DZA65_RS04830	0.71	-1.0
1,002,235	-		DZA65_RS04830	0.71	-0.4
1,002,235	-		DZA65_RS04830	0.71	+0.9
1,002,238	+		DZA65_RS04830	0.71	-0.2
1,002,238	+		DZA65_RS04830	0.71	+1.1
1,002,238	+		DZA65_RS04830	0.71	+2.4
1,002,238	+		DZA65_RS04830	0.71	+0.2
1,002,238	+		DZA65_RS04830	0.71	+0.7
1,002,238	+		DZA65_RS04830	0.71	-1.7
1,002,238	+		DZA65_RS04830	0.71	-2.1
1,002,238	+		DZA65_RS04830	0.71	-0.4
1,002,238	+		DZA65_RS04830	0.71	+0.6
1,002,238	+		DZA65_RS04830	0.71	-0.7
1,002,238	+		DZA65_RS04830	0.71	-0.7
1,002,238	+		DZA65_RS04830	0.71	+0.3
1,002,238	+		DZA65_RS04830	0.71	-0.2
1,002,238	+		DZA65_RS04830	0.71	-0.4
1,002,239	-		DZA65_RS04830	0.71	-1.0
1,002,239	-		DZA65_RS04830	0.71	-1.8
1,002,239	-		DZA65_RS04830	0.71	+0.4
1,002,239	-		DZA65_RS04830	0.71	-1.0
1,002,239	-		DZA65_RS04830	0.71	-0.7
1,002,239	-		DZA65_RS04830	0.71	+0.9
1,002,239	-		DZA65_RS04830	0.71	-1.0
1,002,239	-		DZA65_RS04830	0.71	-1.4
1,002,239	-		DZA65_RS04830	0.71	-0.4
1,002,239	-		DZA65_RS04830	0.71	+2.0
1,002,239	-		DZA65_RS04830	0.71	-0.2
1,002,239	-		DZA65_RS04830	0.71	+0.2
1,002,239	-		DZA65_RS04830	0.71	-0.0
1,002,239	-		DZA65_RS04830	0.71	+0.4
1,002,300	+		DZA65_RS04830	0.74	-0.7
1,002,300	+		DZA65_RS04830	0.74	-1.0
1,002,300	+		DZA65_RS04830	0.74	-0.9
1,002,300	+		DZA65_RS04830	0.74	-0.7
1,002,300	+		DZA65_RS04830	0.74	-1.1
1,002,300	+		DZA65_RS04830	0.74	+2.0
1,002,300	+		DZA65_RS04830	0.74	-0.7
1,002,300	+		DZA65_RS04830	0.74	-2.3
1,002,300	+		DZA65_RS04830	0.74	+0.2
1,002,300	+				+0.9
1,002,300	+		DZA65_RS04830	0.74	+0.6
1,002,301	-		DZA65_RS04830	0.74	-1.1
1,002,301	-		DZA65_RS04830	0.74	-0.4
1,002,301	-		DZA65_RS04830	0.74	-1.7
1,002,301	-		DZA65_RS04830	0.74	+1.3
1,002,301	-		DZA65_RS04830	0.74	+3.6
1,002,360	+				-1.0
1,002,360	+		DZA65_RS04830	0.78	-0.8
1,002,360	+		DZA65_RS04830	0.78	+0.6
1,002,427	+		DZA65_RS04830	0.82	+0.5
1,002,427	+		DZA65_RS04830	0.82	-0.0
1,002,427	+		DZA65_RS04830	0.82	+0.8
1,002,427	+		DZA65_RS04830	0.82	-0.2
1,002,427	+		DZA65_RS04830	0.82	+1.4
1,002,428	-		DZA65_RS04830	0.82	-0.3
1,002,428	-		DZA65_RS04830	0.82	+1.3
1,002,428	-		DZA65_RS04830	0.82	+1.0
1,002,428	-		DZA65_RS04830	0.82	-0.0
1,002,519	+		DZA65_RS04830	0.87	+0.5
1,002,520	-		DZA65_RS04830	0.87	-0.5
1,002,594	+				-0.1
1,002,594	+				+0.4
1,002,594	+				+0.3
1,002,594	+				-1.7
1,002,594	+				-0.6
1,002,594	+				+0.1
1,002,595	-				-0.0
1,002,595	-				-2.4
1,002,595	-				-0.2
1,002,595	-				-0.3
1,002,595	-				+0.6
1,002,595	-				+0.2
1,002,595	-				-1.9
1,002,599	+				-0.2
1,002,600	-				-0.4
1,002,638	+				+0.7
1,002,639	-				-0.8
1,002,642	+				-0.4
1,002,642	+				-0.3
1,002,683	+				-0.9
1,002,684	-				-0.5
1,002,751	+				-1.4
1,002,752	-				-1.6
1,002,752	-				-1.0
1,002,752	-				-0.6
1,002,752	-				+0.2
1,002,809	-		DZA65_RS04835	0.28	+1.4
1,002,813	+		DZA65_RS04835	0.29	-0.4
1,002,813	+		DZA65_RS04835	0.29	-1.3
1,002,813	+		DZA65_RS04835	0.29	+0.3
1,002,814	-		DZA65_RS04835	0.30	+0.4
1,002,814	-		DZA65_RS04835	0.30	-0.9
1,002,814	-		DZA65_RS04835	0.30	+0.1
1,002,898	+		DZA65_RS04835	0.63	+0.1
1,002,898	+		DZA65_RS04835	0.63	+0.1
1,002,899	-		DZA65_RS04835	0.64	+2.6
1,002,899	-		DZA65_RS04835	0.64	+0.0
1,002,899	-		DZA65_RS04835	0.64	-1.6
1,003,013	+				+1.1
1,003,014	-				-0.0
1,003,014	-				-0.0
1,003,075	+		DZA65_RS04840	0.13	+1.0
1,003,198	+		DZA65_RS04840	0.29	-1.0
1,003,198	+		DZA65_RS04840	0.29	-0.4
1,003,198	+		DZA65_RS04840	0.29	+1.1
1,003,198	+		DZA65_RS04840	0.29	+0.3
1,003,198	+		DZA65_RS04840	0.29	-0.3
1,003,198	+		DZA65_RS04840	0.29	-0.3
1,003,199	-		DZA65_RS04840	0.29	+1.1
1,003,199	-		DZA65_RS04840	0.29	+0.3
1,003,199	-		DZA65_RS04840	0.29	-2.1
1,003,199	-		DZA65_RS04840	0.29	+1.2
1,003,199	-		DZA65_RS04840	0.29	-0.4
1,003,224	-		DZA65_RS04840	0.32	-0.9
1,003,257	+		DZA65_RS04840	0.37	+0.3
1,003,257	+		DZA65_RS04840	0.37	-1.0
1,003,258	-		DZA65_RS04840	0.37	+0.6
1,003,258	-		DZA65_RS04840	0.37	+0.4
1,003,258	-		DZA65_RS04840	0.37	+1.2
1,003,258	-		DZA65_RS04840	0.37	+0.6
1,003,258	-		DZA65_RS04840	0.37	-0.0
1,003,258	-		DZA65_RS04840	0.37	+0.6
1,003,259	+		DZA65_RS04840	0.37	-2.0
1,003,298	+		DZA65_RS04840	0.42	+1.0
1,003,298	+		DZA65_RS04840	0.42	-0.1
1,003,299	-		DZA65_RS04840	0.42	+1.3
1,003,299	-		DZA65_RS04840	0.42	-0.1
1,003,299	-		DZA65_RS04840	0.42	-0.4
1,003,344	+		DZA65_RS04840	0.48	+0.6
1,003,345	-		DZA65_RS04840	0.49	+2.0
1,003,461	+		DZA65_RS04840	0.64	-0.2
1,003,462	-		DZA65_RS04840	0.64	-1.0
1,003,462	-		DZA65_RS04840	0.64	+1.7
1,003,462	-		DZA65_RS04840	0.64	-1.0
1,003,462	-		DZA65_RS04840	0.64	+0.5
1,003,462	-		DZA65_RS04840	0.64	+0.3
1,003,498	+		DZA65_RS04840	0.69	-0.4
1,003,498	+		DZA65_RS04840	0.69	-1.6
1,003,498	+		DZA65_RS04840	0.69	-1.2
1,003,498	+		DZA65_RS04840	0.69	-0.7
1,003,498	+		DZA65_RS04840	0.69	-0.4
1,003,498	+		DZA65_RS04840	0.69	-0.7
1,003,499	-		DZA65_RS04840	0.69	-1.0
1,003,499	-		DZA65_RS04840	0.69	+1.8
1,003,499	-		DZA65_RS04840	0.69	-0.0
1,003,571	+		DZA65_RS04840	0.79	+1.2
1,003,571	+		DZA65_RS04840	0.79	+0.3
1,003,571	+		DZA65_RS04840	0.79	+0.7
1,003,572	-		DZA65_RS04840	0.79	-0.6
1,003,572	-		DZA65_RS04840	0.79	-0.0
1,003,572	-		DZA65_RS04840	0.79	+0.2
1,003,572	-		DZA65_RS04840	0.79	+1.3
1,003,572	-		DZA65_RS04840	0.79	+1.7
1,003,572	-		DZA65_RS04840	0.79	-1.2
1,003,572	-		DZA65_RS04840	0.79	-0.2
1,003,618	+		DZA65_RS04840	0.85	-1.0
1,003,626	+		DZA65_RS04840	0.86	-1.0
1,003,627	-		DZA65_RS04840	0.86	-2.0
1,003,665	-				+0.6
1,003,667	+				+0.6
1,003,668	-				+1.1
1,003,668	-				-0.0
1,003,697	+				+1.3
1,003,698	-				+0.6
1,003,701	+				+0.5
1,003,701	+				+1.3
1,003,702	-				+0.4
1,003,729	-				-1.4
1,003,744	+				+0.3
1,003,744	+				-0.7
1,003,836	-				-0.4
1,003,836	-				-0.3
1,003,846	+				-1.0
1,003,855	+				-0.4
1,003,855	+				-0.0
1,003,855	+				-0.0
1,003,855	+				+0.6
1,003,855	+				+0.3
1,003,855	+				-0.9
1,003,855	+				-0.5
1,003,856	-				-2.0
1,003,856	-				-1.2
1,003,856	-				+1.0
1,003,856	-				-0.0
1,003,856	-				-0.9
1,003,856	-				-0.5
1,003,856	-				-0.8
1,003,959	+		DZA65_RS04845	0.26	-0.6
1,003,960	-		DZA65_RS04845	0.26	-0.2
1,004,021	-		DZA65_RS04845	0.37	-0.4
1,004,021	-		DZA65_RS04845	0.37	-1.8
1,004,021	-		DZA65_RS04845	0.37	-0.2
1,004,112	+		DZA65_RS04845	0.53	-0.4
1,004,112	+		DZA65_RS04845	0.53	-0.4
1,004,137	+		DZA65_RS04845	0.57	+0.3
1,004,155	+		DZA65_RS04845	0.60	+0.3
1,004,155	+		DZA65_RS04845	0.60	-1.0
1,004,227	+		DZA65_RS04845	0.73	-1.6
1,004,227	+		DZA65_RS04845	0.73	-1.7
1,004,227	+		DZA65_RS04845	0.73	+0.6
1,004,227	+		DZA65_RS04845	0.73	+0.2
1,004,227	+		DZA65_RS04845	0.73	-1.3
1,004,227	+		DZA65_RS04845	0.73	+0.1
1,004,227	+		DZA65_RS04845	0.73	-1.3
1,004,227	+		DZA65_RS04845	0.73	-2.2
1,004,227	+		DZA65_RS04845	0.73	-0.1
1,004,227	+		DZA65_RS04845	0.73	+0.4
1,004,227	+		DZA65_RS04845	0.73	+1.0
1,004,227	+		DZA65_RS04845	0.73	+1.4
1,004,227	+		DZA65_RS04845	0.73	+1.2
1,004,228	-		DZA65_RS04845	0.73	-0.3
1,004,228	-		DZA65_RS04845	0.73	-0.0
1,004,228	-		DZA65_RS04845	0.73	-0.3
1,004,228	-		DZA65_RS04845	0.73	+1.6
1,004,228	-		DZA65_RS04845	0.73	-0.2
1,004,228	-		DZA65_RS04845	0.73	-0.2
1,004,228	-		DZA65_RS04845	0.73	-1.5
1,004,228	-		DZA65_RS04845	0.73	-0.4
1,004,228	-		DZA65_RS04845	0.73	+1.0
1,004,228	-		DZA65_RS04845	0.73	-0.4
1,004,308	+		DZA65_RS04845	0.87	-0.0
1,004,308	+		DZA65_RS04845	0.87	-0.0
1,004,308	+		DZA65_RS04845	0.87	-1.5
1,004,308	+		DZA65_RS04845	0.87	-0.4
1,004,308	+		DZA65_RS04845	0.87	-1.4
1,004,308	+		DZA65_RS04845	0.87	-0.2
1,004,308	+		DZA65_RS04845	0.87	+0.3
1,004,308	+		DZA65_RS04845	0.87	-0.5
1,004,308	+		DZA65_RS04845	0.87	-0.7
1,004,308	+		DZA65_RS04845	0.87	+0.2
1,004,308	+		DZA65_RS04845	0.87	+1.0
1,004,308	+		DZA65_RS04845	0.87	-0.9
1,004,309	-		DZA65_RS04845	0.87	-2.0
1,004,309	-		DZA65_RS04845	0.87	+0.6
1,004,309	-		DZA65_RS04845	0.87	+1.0
1,004,309	-		DZA65_RS04845	0.87	+0.2
1,004,309	-		DZA65_RS04845	0.87	-0.8
1,004,309	-		DZA65_RS04845	0.87	-0.0
1,004,309	-		DZA65_RS04845	0.87	-0.0
1,004,309	-		DZA65_RS04845	0.87	+0.3
1,004,309	-		DZA65_RS04845	0.87	-0.2
1,004,309	-		DZA65_RS04845	0.87	-1.9
1,004,323	+		DZA65_RS04845	0.89	+0.3
1,004,323	+		DZA65_RS04845	0.89	-1.2
1,004,386	-				-0.7
1,004,398	+				-0.4
1,004,399	-				-0.2
1,004,443	+		DZA65_RS04850	0.19	+0.2
1,004,443	+		DZA65_RS04850	0.19	-0.4
1,004,443	+		DZA65_RS04850	0.19	-0.9
1,004,444	-		DZA65_RS04850	0.19	+0.0
1,004,444	-		DZA65_RS04850	0.19	+0.6
1,004,470	-		DZA65_RS04850	0.30	-0.5
1,004,479	+		DZA65_RS04850	0.34	-0.3
1,004,525	+		DZA65_RS04850	0.54	+0.2
1,004,581	+		DZA65_RS04850	0.78	-0.7
1,004,582	-		DZA65_RS04850	0.78	-1.0
1,004,582	-		DZA65_RS04850	0.78	+0.4
1,004,588	+		DZA65_RS04850	0.81	-0.4
1,004,589	-		DZA65_RS04850	0.81	-0.0
1,004,609	+				-0.2
1,004,609	+				+0.2
1,004,609	+				-0.1
1,004,609	+				-0.0
1,004,609	+				-0.4
1,004,609	+				+1.2
1,004,609	+				-1.9
1,004,609	+				+0.4
1,004,609	+				-0.4
1,004,610	-				+0.3
1,004,610	-				-0.6
1,004,610	-				+0.6
1,004,610	-				-0.8
1,004,610	-				-0.2
1,004,610	-				-0.1
1,004,610	-				-0.1
1,004,610	-				+0.3
1,004,610	-				-1.2
1,004,610	-				-1.0
1,004,610	-				-0.4
1,004,611	+				+0.7
1,004,611	+				+0.6
1,004,611	+				+0.6
1,004,611	+				+0.6
1,004,611	+				+0.9
1,004,612	-				-2.2
1,004,612	-				+0.8
1,004,627	-				+1.1
1,004,627	-				-1.6
1,004,631	-				-1.2
1,004,662	+				-2.0
1,004,712	+				-0.3
1,004,712	+				-0.8
1,004,712	+				-0.3
1,004,712	+				-0.3
1,004,712	+				-0.3
1,004,712	+				-0.2
1,004,713	-				-0.7
1,004,724	+				-0.4
1,004,724	+				+0.3
1,004,724	+				-0.3
1,004,724	+				-0.3
1,004,724	+				-0.5
1,004,724	+				-0.4
1,004,724	+				+0.3
1,004,724	+				-1.0
1,004,725	-				+0.5
1,004,725	-				-0.2
1,004,725	-				+2.6
1,004,725	-				+0.1
1,004,725	-				-0.0