Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04715 and DZA65_RS04720 are separated by 2 nucleotides DZA65_RS04720 and DZA65_RS04725 are separated by 58 nucleotides DZA65_RS04725 and DZA65_RS04730 are separated by 107 nucleotides DZA65_RS04730 and DZA65_RS04735 are separated by 148 nucleotides DZA65_RS04735 and DZA65_RS04740 overlap by 1 nucleotides
DZA65_RS04715: DZA65_RS04715 - type II toxin-antitoxin system toxin CcdB, at 981,395 to 981,700
_RS04715
DZA65_RS04720: DZA65_RS04720 - type II toxin-antitoxin system antitoxin CcdA, at 981,703 to 981,921
_RS04720
DZA65_RS04725: DZA65_RS04725 - DUF4102 domain-containing protein, at 981,980 to 982,426
_RS04725
DZA65_RS04730: DZA65_RS04730 - hypothetical protein, at 982,534 to 982,716
_RS04730
DZA65_RS04735: DZA65_RS04735 - M48 family metallopeptidase, at 982,865 to 983,581
_RS04735
DZA65_RS04740: DZA65_RS04740 - HsdR family type I site-specific deoxyribonuclease, at 983,581 to 986,676
_RS04740
Position (kb) 982
983 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.560 kb on - strand, within DZA65_RS04715 at 981.591 kb on - strand, within DZA65_RS04715 at 981.607 kb on + strand, within DZA65_RS04715 at 981.607 kb on + strand, within DZA65_RS04715 at 981.608 kb on - strand, within DZA65_RS04715 at 981.608 kb on - strand, within DZA65_RS04715 at 981.852 kb on + strand, within DZA65_RS04720 at 981.852 kb on + strand, within DZA65_RS04720 at 981.881 kb on + strand, within DZA65_RS04720 at 981.881 kb on + strand, within DZA65_RS04720 at 981.945 kb on - strand at 981.981 kb on + strand at 982.021 kb on + strand at 982.021 kb on + strand at 982.022 kb on - strand at 982.022 kb on - strand at 982.023 kb on + strand at 982.115 kb on - strand, within DZA65_RS04725 at 982.146 kb on + strand, within DZA65_RS04725 at 982.155 kb on + strand, within DZA65_RS04725 at 982.156 kb on - strand, within DZA65_RS04725 at 982.156 kb on - strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.165 kb on - strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.175 kb on - strand, within DZA65_RS04725 at 982.274 kb on + strand at 982.274 kb on + strand, within DZA65_RS04725 at 982.274 kb on + strand, within DZA65_RS04725 at 982.275 kb on - strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.320 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.378 kb on - strand, within DZA65_RS04725 at 982.474 kb on + strand at 982.503 kb on - strand at 982.503 kb on - strand at 982.531 kb on + strand at 982.532 kb on - strand at 982.532 kb on - strand at 982.535 kb on + strand at 982.535 kb on + strand at 982.536 kb on - strand at 982.579 kb on + strand, within DZA65_RS04730 at 982.579 kb on + strand, within DZA65_RS04730 at 982.623 kb on - strand, within DZA65_RS04730 at 982.697 kb on - strand, within DZA65_RS04730 at 982.814 kb on + strand at 982.814 kb on + strand at 982.819 kb on - strand at 982.823 kb on - strand at 982.829 kb on - strand at 982.869 kb on + strand at 982.869 kb on + strand at 982.870 kb on - strand at 982.898 kb on + strand at 982.898 kb on + strand at 982.898 kb on + strand at 982.898 kb on + strand at 982.898 kb on + strand at 982.898 kb on + strand at 982.899 kb on - strand at 982.899 kb on - strand at 982.899 kb on - strand at 982.899 kb on - strand at 982.900 kb on + strand at 982.900 kb on + strand at 982.900 kb on + strand at 982.901 kb on - strand at 982.930 kb on + strand at 982.936 kb on + strand at 982.949 kb on - strand, within DZA65_RS04735 at 982.986 kb on - strand, within DZA65_RS04735 at 983.011 kb on + strand, within DZA65_RS04735 at 983.011 kb on + strand, within DZA65_RS04735 at 983.011 kb on + strand, within DZA65_RS04735 at 983.011 kb on + strand, within DZA65_RS04735 at 983.011 kb on + strand at 983.012 kb on - strand, within DZA65_RS04735 at 983.012 kb on - strand, within DZA65_RS04735 at 983.012 kb on - strand, within DZA65_RS04735 at 983.012 kb on - strand, within DZA65_RS04735 at 983.012 kb on - strand, within DZA65_RS04735 at 983.013 kb on + strand, within DZA65_RS04735 at 983.013 kb on + strand, within DZA65_RS04735 at 983.013 kb on + strand at 983.013 kb on + strand, within DZA65_RS04735 at 983.014 kb on - strand, within DZA65_RS04735 at 983.014 kb on - strand at 983.014 kb on - strand, within DZA65_RS04735 at 983.014 kb on - strand, within DZA65_RS04735 at 983.014 kb on - strand, within DZA65_RS04735 at 983.077 kb on + strand, within DZA65_RS04735 at 983.077 kb on + strand, within DZA65_RS04735 at 983.078 kb on - strand, within DZA65_RS04735 at 983.078 kb on - strand, within DZA65_RS04735 at 983.078 kb on - strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.081 kb on - strand, within DZA65_RS04735 at 983.163 kb on - strand, within DZA65_RS04735 at 983.163 kb on - strand, within DZA65_RS04735 at 983.167 kb on + strand, within DZA65_RS04735 at 983.211 kb on - strand, within DZA65_RS04735 at 983.211 kb on - strand, within DZA65_RS04735 at 983.222 kb on - strand, within DZA65_RS04735 at 983.250 kb on + strand, within DZA65_RS04735 at 983.250 kb on + strand, within DZA65_RS04735 at 983.250 kb on + strand, within DZA65_RS04735 at 983.250 kb on + strand, within DZA65_RS04735 at 983.251 kb on - strand, within DZA65_RS04735 at 983.263 kb on + strand, within DZA65_RS04735 at 983.263 kb on + strand, within DZA65_RS04735 at 983.263 kb on + strand, within DZA65_RS04735 at 983.264 kb on - strand, within DZA65_RS04735 at 983.266 kb on + strand, within DZA65_RS04735 at 983.266 kb on + strand, within DZA65_RS04735 at 983.266 kb on + strand, within DZA65_RS04735 at 983.266 kb on + strand, within DZA65_RS04735 at 983.267 kb on - strand, within DZA65_RS04735 at 983.323 kb on - strand, within DZA65_RS04735 at 983.323 kb on - strand, within DZA65_RS04735 at 983.323 kb on - strand, within DZA65_RS04735 at 983.326 kb on + strand, within DZA65_RS04735 at 983.327 kb on - strand, within DZA65_RS04735 at 983.327 kb on - strand, within DZA65_RS04735 at 983.340 kb on + strand, within DZA65_RS04735 at 983.341 kb on - strand, within DZA65_RS04735 at 983.341 kb on - strand, within DZA65_RS04735 at 983.448 kb on - strand, within DZA65_RS04735 at 983.515 kb on + strand at 983.528 kb on - strand at 983.560 kb on + strand at 983.560 kb on + strand at 983.560 kb on + strand at 983.560 kb on + strand at 983.560 kb on + strand at 983.561 kb on - strand at 983.561 kb on - strand at 983.561 kb on - strand at 983.561 kb on - strand at 983.564 kb on + strand at 983.564 kb on + strand at 983.564 kb on + strand at 983.565 kb on - strand at 983.565 kb on - strand at 983.565 kb on - strand at 983.565 kb on - strand at 983.565 kb on - strand at 983.588 kb on + strand at 983.588 kb on + strand at 983.629 kb on - strand at 983.637 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.685 kb on + strand at 983.685 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 981,559 + DZA65_RS04715 0.54 +0.2 981,559 + DZA65_RS04715 0.54 +1.9 981,559 + DZA65_RS04715 0.54 +0.6 981,559 + DZA65_RS04715 0.54 +1.8 981,560 - DZA65_RS04715 0.54 +0.2 981,591 - DZA65_RS04715 0.64 -0.9 981,607 + DZA65_RS04715 0.69 +0.0 981,607 + DZA65_RS04715 0.69 -0.2 981,608 - DZA65_RS04715 0.70 -1.0 981,608 - DZA65_RS04715 0.70 +0.3 981,852 + DZA65_RS04720 0.68 +0.9 981,852 + DZA65_RS04720 0.68 -0.7 981,881 + DZA65_RS04720 0.81 +0.9 981,881 + DZA65_RS04720 0.81 -0.2 981,945 - +0.6 981,981 + +1.6 982,021 + -0.9 982,021 + +0.9 982,022 - +0.3 982,022 - +0.6 982,023 + -0.6 982,115 - DZA65_RS04725 0.30 +1.3 982,146 + DZA65_RS04725 0.37 -1.6 982,155 + DZA65_RS04725 0.39 +0.8 982,156 - DZA65_RS04725 0.39 +0.4 982,156 - DZA65_RS04725 0.39 +0.2 982,164 + DZA65_RS04725 0.41 +1.6 982,164 + DZA65_RS04725 0.41 -0.4 982,164 + DZA65_RS04725 0.41 -1.4 982,164 + DZA65_RS04725 0.41 -0.2 982,165 - DZA65_RS04725 0.41 -0.4 982,168 + DZA65_RS04725 0.42 -2.4 982,168 + DZA65_RS04725 0.42 +0.4 982,168 + DZA65_RS04725 0.42 +0.0 982,168 + DZA65_RS04725 0.42 +1.4 982,168 + DZA65_RS04725 0.42 +0.3 982,168 + DZA65_RS04725 0.42 +2.3 982,168 + DZA65_RS04725 0.42 +0.6 982,168 + DZA65_RS04725 0.42 -1.2 982,168 + DZA65_RS04725 0.42 +2.2 982,169 - DZA65_RS04725 0.42 -0.1 982,169 - DZA65_RS04725 0.42 -1.2 982,169 - DZA65_RS04725 0.42 +0.5 982,169 - DZA65_RS04725 0.42 -0.4 982,169 - DZA65_RS04725 0.42 -0.8 982,169 - DZA65_RS04725 0.42 -0.2 982,169 - DZA65_RS04725 0.42 +0.2 982,175 - DZA65_RS04725 0.44 -2.2 982,274 + +3.2 982,274 + DZA65_RS04725 0.66 -2.0 982,274 + DZA65_RS04725 0.66 -1.9 982,275 - DZA65_RS04725 0.66 -0.4 982,314 + DZA65_RS04725 0.75 +0.4 982,314 + DZA65_RS04725 0.75 +0.4 982,314 + DZA65_RS04725 0.75 -1.7 982,314 + DZA65_RS04725 0.75 +0.6 982,314 + DZA65_RS04725 0.75 +0.2 982,315 - DZA65_RS04725 0.75 +0.6 982,315 - DZA65_RS04725 0.75 +0.8 982,315 - DZA65_RS04725 0.75 +1.4 982,315 - DZA65_RS04725 0.75 -2.0 982,319 + DZA65_RS04725 0.76 +0.2 982,319 + DZA65_RS04725 0.76 -1.0 982,319 + DZA65_RS04725 0.76 -0.3 982,319 + DZA65_RS04725 0.76 +1.1 982,319 + DZA65_RS04725 0.76 +0.0 982,319 + DZA65_RS04725 0.76 -0.1 982,320 - DZA65_RS04725 0.76 -0.8 982,351 - DZA65_RS04725 0.83 -0.4 982,351 - DZA65_RS04725 0.83 -0.7 982,351 - +2.4 982,351 - DZA65_RS04725 0.83 -0.4 982,351 - DZA65_RS04725 0.83 +0.7 982,378 - DZA65_RS04725 0.89 +1.6 982,474 + +0.3 982,503 - +0.1 982,503 - -0.0 982,531 + -0.6 982,532 - -0.2 982,532 - -0.0 982,535 + +1.3 982,535 + -0.3 982,536 - -0.6 982,579 + DZA65_RS04730 0.25 -0.8 982,579 + DZA65_RS04730 0.25 -0.6 982,623 - DZA65_RS04730 0.49 -0.3 982,697 - DZA65_RS04730 0.89 -0.6 982,814 + +0.9 982,814 + -0.9 982,819 - +0.7 982,823 - +0.6 982,829 - +0.9 982,869 + -0.0 982,869 + +0.3 982,870 - +0.5 982,898 + +1.4 982,898 + +2.2 982,898 + +0.3 982,898 + -0.3 982,898 + -0.7 982,898 + +0.8 982,899 - -0.6 982,899 - -0.7 982,899 - +1.0 982,899 - -0.1 982,900 + +0.2 982,900 + +0.6 982,900 + -0.7 982,901 - -0.4 982,930 + +1.2 982,936 + -0.3 982,949 - DZA65_RS04735 0.12 +0.9 982,986 - DZA65_RS04735 0.17 +0.7 983,011 + DZA65_RS04735 0.20 +0.6 983,011 + DZA65_RS04735 0.20 +1.7 983,011 + DZA65_RS04735 0.20 +1.0 983,011 + DZA65_RS04735 0.20 -1.4 983,011 + -0.4 983,012 - DZA65_RS04735 0.21 -1.0 983,012 - DZA65_RS04735 0.21 -0.7 983,012 - DZA65_RS04735 0.21 -0.2 983,012 - DZA65_RS04735 0.21 -1.4 983,012 - DZA65_RS04735 0.21 +0.9 983,013 + DZA65_RS04735 0.21 +0.6 983,013 + DZA65_RS04735 0.21 -0.7 983,013 + +1.0 983,013 + DZA65_RS04735 0.21 +0.2 983,014 - DZA65_RS04735 0.21 +1.0 983,014 - -0.0 983,014 - DZA65_RS04735 0.21 +0.1 983,014 - DZA65_RS04735 0.21 -0.2 983,014 - DZA65_RS04735 0.21 +0.2 983,077 + DZA65_RS04735 0.30 -0.7 983,077 + DZA65_RS04735 0.30 +1.3 983,078 - DZA65_RS04735 0.30 +0.8 983,078 - DZA65_RS04735 0.30 +0.3 983,078 - DZA65_RS04735 0.30 +0.6 983,080 + DZA65_RS04735 0.30 +0.0 983,080 + DZA65_RS04735 0.30 -0.3 983,080 + DZA65_RS04735 0.30 -1.4 983,080 + DZA65_RS04735 0.30 +0.4 983,080 + DZA65_RS04735 0.30 +1.1 983,080 + DZA65_RS04735 0.30 +0.9 983,080 + DZA65_RS04735 0.30 +0.2 983,080 + DZA65_RS04735 0.30 -1.1 983,081 - DZA65_RS04735 0.30 +0.8 983,163 - DZA65_RS04735 0.42 -2.6 983,163 - DZA65_RS04735 0.42 +0.3 983,167 + DZA65_RS04735 0.42 +0.7 983,211 - DZA65_RS04735 0.48 -0.2 983,211 - DZA65_RS04735 0.48 +0.1 983,222 - DZA65_RS04735 0.50 -0.4 983,250 + DZA65_RS04735 0.54 -1.0 983,250 + DZA65_RS04735 0.54 -0.4 983,250 + DZA65_RS04735 0.54 -1.2 983,250 + DZA65_RS04735 0.54 -0.4 983,251 - DZA65_RS04735 0.54 -0.1 983,263 + DZA65_RS04735 0.56 +0.6 983,263 + DZA65_RS04735 0.56 -0.0 983,263 + DZA65_RS04735 0.56 +0.7 983,264 - DZA65_RS04735 0.56 -0.6 983,266 + DZA65_RS04735 0.56 -0.3 983,266 + DZA65_RS04735 0.56 -0.4 983,266 + DZA65_RS04735 0.56 -1.7 983,266 + DZA65_RS04735 0.56 +0.4 983,267 - DZA65_RS04735 0.56 +0.4 983,323 - DZA65_RS04735 0.64 -1.0 983,323 - DZA65_RS04735 0.64 -0.6 983,323 - DZA65_RS04735 0.64 -0.0 983,326 + DZA65_RS04735 0.64 +0.6 983,327 - DZA65_RS04735 0.64 +0.6 983,327 - DZA65_RS04735 0.64 -0.2 983,340 + DZA65_RS04735 0.66 -0.2 983,341 - DZA65_RS04735 0.66 -0.5 983,341 - DZA65_RS04735 0.66 -0.2 983,448 - DZA65_RS04735 0.81 -2.2 983,515 + -1.0 983,528 - +0.3 983,560 + +0.8 983,560 + +2.6 983,560 + -1.2 983,560 + -0.5 983,560 + +1.0 983,561 - -0.0 983,561 - -1.2 983,561 - +0.9 983,561 - -1.2 983,564 + +0.8 983,564 + -0.7 983,564 + +0.9 983,565 - -0.7 983,565 - +1.2 983,565 - +0.2 983,565 - +0.6 983,565 - +0.5 983,588 + -0.6 983,588 + +0.6 983,629 - +0.7 983,637 + +1.0 983,639 + -0.1 983,639 + -2.0 983,639 + -1.2 983,639 + +0.9 983,639 + +0.6 983,639 + -1.9 983,639 + +0.2 983,639 + -0.4 983,639 + -0.0 983,639 + -0.4 983,639 + -0.0 983,640 - +0.6 983,640 - -1.4 983,640 - -0.4 983,640 - +0.6 983,640 - -0.8 983,640 - +0.2 983,640 - +2.2 983,640 - -0.2 983,640 - +0.6 983,640 - -0.1 983,685 + -0.8 983,685 + -1.7
Or see this region's nucleotide sequence