Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04285 and DZA65_RS04290 are separated by 446 nucleotides DZA65_RS04290 and DZA65_RS04295 are separated by 113 nucleotides DZA65_RS04295 and DZA65_RS04300 are separated by 354 nucleotides
DZA65_RS04285: DZA65_RS04285 - RpoE-regulated lipoprotein, at 894,100 to 894,708
_RS04285
DZA65_RS04290: DZA65_RS04290 - N-glycosyltransferase, at 895,155 to 896,429
_RS04290
DZA65_RS04295: DZA65_RS04295 - transcriptional regulator, at 896,543 to 896,830
_RS04295
DZA65_RS04300: DZA65_RS04300 - LuxR family transcriptional regulator, at 897,185 to 897,874
_RS04300
Position (kb) 895
896
897 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 894.261 kb on + strand, within DZA65_RS04285 at 894.367 kb on + strand, within DZA65_RS04285 at 894.368 kb on - strand, within DZA65_RS04285 at 894.505 kb on + strand, within DZA65_RS04285 at 894.505 kb on + strand, within DZA65_RS04285 at 894.598 kb on + strand, within DZA65_RS04285 at 894.598 kb on + strand, within DZA65_RS04285 at 894.599 kb on - strand, within DZA65_RS04285 at 894.599 kb on - strand, within DZA65_RS04285 at 894.651 kb on + strand at 894.652 kb on - strand at 894.717 kb on + strand at 894.717 kb on + strand at 894.717 kb on + strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.718 kb on - strand at 894.805 kb on + strand at 894.806 kb on - strand at 894.806 kb on - strand at 894.837 kb on + strand at 894.838 kb on - strand at 894.838 kb on - strand at 894.853 kb on - strand at 894.884 kb on + strand at 894.884 kb on + strand at 894.887 kb on + strand at 894.887 kb on + strand at 894.888 kb on - strand at 894.945 kb on + strand at 894.946 kb on - strand at 894.946 kb on - strand at 894.946 kb on - strand at 894.959 kb on + strand at 894.959 kb on + strand at 894.960 kb on - strand at 894.960 kb on - strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.971 kb on + strand at 894.972 kb on - strand at 894.972 kb on - strand at 894.972 kb on - strand at 894.996 kb on + strand at 894.996 kb on + strand at 894.997 kb on - strand at 894.997 kb on - strand at 894.997 kb on - strand at 895.009 kb on - strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.023 kb on + strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.024 kb on - strand at 895.074 kb on - strand at 895.082 kb on + strand at 895.083 kb on - strand at 895.083 kb on - strand at 895.143 kb on + strand at 895.143 kb on + strand at 895.143 kb on + strand at 895.144 kb on - strand at 895.144 kb on - strand at 895.144 kb on - strand at 895.200 kb on + strand at 895.200 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.205 kb on + strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.206 kb on - strand at 895.235 kb on + strand at 895.235 kb on + strand at 895.235 kb on + strand at 895.236 kb on - strand at 895.307 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.433 kb on + strand, within DZA65_RS04290 at 895.434 kb on - strand, within DZA65_RS04290 at 895.513 kb on - strand, within DZA65_RS04290 at 895.513 kb on - strand, within DZA65_RS04290 at 895.821 kb on + strand, within DZA65_RS04290 at 895.822 kb on - strand, within DZA65_RS04290 at 896.102 kb on + strand, within DZA65_RS04290 at 896.102 kb on + strand, within DZA65_RS04290 at 896.144 kb on + strand, within DZA65_RS04290 at 896.340 kb on + strand at 896.342 kb on + strand at 896.342 kb on + strand at 896.342 kb on + strand at 896.343 kb on - strand at 896.343 kb on - strand at 896.362 kb on + strand at 896.363 kb on - strand at 896.363 kb on - strand at 896.438 kb on - strand at 896.448 kb on + strand at 896.511 kb on + strand at 896.511 kb on + strand at 896.512 kb on - strand at 896.512 kb on - strand at 896.541 kb on - strand at 896.552 kb on + strand at 896.552 kb on + strand at 896.552 kb on + strand at 896.575 kb on + strand, within DZA65_RS04295 at 896.575 kb on + strand, within DZA65_RS04295 at 896.622 kb on + strand, within DZA65_RS04295 at 896.622 kb on + strand, within DZA65_RS04295 at 896.661 kb on - strand, within DZA65_RS04295 at 896.703 kb on + strand, within DZA65_RS04295 at 896.705 kb on + strand, within DZA65_RS04295 at 896.705 kb on + strand, within DZA65_RS04295 at 896.706 kb on - strand, within DZA65_RS04295 at 896.835 kb on + strand at 896.855 kb on - strand at 896.879 kb on + strand at 896.906 kb on - strand at 896.917 kb on - strand at 896.945 kb on + strand at 896.946 kb on - strand at 896.946 kb on - strand at 896.946 kb on - strand at 896.984 kb on + strand at 896.984 kb on + strand at 896.985 kb on - strand at 896.985 kb on - strand at 896.985 kb on - strand at 896.985 kb on - strand at 896.987 kb on - strand at 897.006 kb on - strand at 897.076 kb on + strand at 897.108 kb on - strand at 897.175 kb on + strand at 897.216 kb on - strand at 897.220 kb on - strand at 897.229 kb on + strand at 897.293 kb on + strand, within DZA65_RS04300 at 897.293 kb on + strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.294 kb on - strand, within DZA65_RS04300 at 897.295 kb on + strand, within DZA65_RS04300 at 897.296 kb on - strand at 897.312 kb on - strand, within DZA65_RS04300 at 897.312 kb on - strand, within DZA65_RS04300 at 897.312 kb on - strand, within DZA65_RS04300 at 897.317 kb on + strand, within DZA65_RS04300 at 897.318 kb on - strand, within DZA65_RS04300 at 897.326 kb on - strand, within DZA65_RS04300
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 894,261 + DZA65_RS04285 0.26 +0.6 894,367 + DZA65_RS04285 0.44 +0.4 894,368 - DZA65_RS04285 0.44 -0.4 894,505 + DZA65_RS04285 0.67 +0.2 894,505 + DZA65_RS04285 0.67 +0.2 894,598 + DZA65_RS04285 0.82 -0.2 894,598 + DZA65_RS04285 0.82 -0.5 894,599 - DZA65_RS04285 0.82 +0.4 894,599 - DZA65_RS04285 0.82 -0.1 894,651 + +0.6 894,652 - +0.8 894,717 + -0.2 894,717 + -1.0 894,717 + -0.1 894,718 - -0.7 894,718 - +0.0 894,718 - -0.3 894,718 - +0.6 894,805 + -0.6 894,806 - +4.4 894,806 - -0.3 894,837 + +0.1 894,838 - -0.9 894,838 - +0.1 894,853 - +0.9 894,884 + +0.2 894,884 + +0.1 894,887 + +0.3 894,887 + -1.1 894,888 - -0.5 894,945 + -0.3 894,946 - -0.9 894,946 - -0.7 894,946 - +0.9 894,959 + +0.9 894,959 + -0.4 894,960 - -0.1 894,960 - +0.3 894,971 + -0.6 894,971 + +0.2 894,971 + -1.1 894,971 + -1.6 894,971 + +0.9 894,972 - -1.7 894,972 - +0.6 894,972 - -0.5 894,996 + +1.1 894,996 + -0.6 894,997 - -1.1 894,997 - -0.0 894,997 - -1.0 895,009 - +2.2 895,023 + -1.8 895,023 + +0.2 895,023 + -2.4 895,023 + +0.1 895,023 + -0.7 895,023 + -1.7 895,023 + +1.4 895,024 - -0.6 895,024 - -0.7 895,024 - +0.3 895,024 - +0.1 895,074 - -0.2 895,082 + +0.8 895,083 - +2.4 895,083 - -1.0 895,143 + +0.1 895,143 + -0.1 895,143 + +0.6 895,144 - +1.3 895,144 - +1.4 895,144 - +0.3 895,200 + -1.3 895,200 + +0.3 895,205 + +1.3 895,205 + +0.2 895,205 + +0.2 895,205 + -0.7 895,206 - +0.8 895,206 - +0.2 895,206 - -0.6 895,206 - -0.1 895,206 - +1.6 895,206 - +1.2 895,206 - +0.6 895,206 - -0.1 895,206 - +0.6 895,235 + +0.0 895,235 + +0.4 895,235 + -0.0 895,236 - +0.8 895,307 + DZA65_RS04290 0.12 -1.4 895,433 + DZA65_RS04290 0.22 -2.4 895,433 + DZA65_RS04290 0.22 -1.7 895,433 + DZA65_RS04290 0.22 +0.1 895,433 + DZA65_RS04290 0.22 +0.3 895,433 + DZA65_RS04290 0.22 -1.4 895,434 - DZA65_RS04290 0.22 -1.3 895,513 - DZA65_RS04290 0.28 +0.2 895,513 - DZA65_RS04290 0.28 +2.4 895,821 + DZA65_RS04290 0.52 -0.6 895,822 - DZA65_RS04290 0.52 +0.0 896,102 + DZA65_RS04290 0.74 -2.0 896,102 + DZA65_RS04290 0.74 -0.4 896,144 + DZA65_RS04290 0.78 +0.3 896,340 + -0.3 896,342 + -0.0 896,342 + +0.8 896,342 + -0.1 896,343 - -2.4 896,343 - -0.8 896,362 + -0.0 896,363 - +0.6 896,363 - -0.4 896,438 - +0.6 896,448 + +0.5 896,511 + +0.2 896,511 + +0.5 896,512 - -0.1 896,512 - +0.2 896,541 - -0.6 896,552 + +0.3 896,552 + -0.1 896,552 + +1.6 896,575 + DZA65_RS04295 0.11 -0.1 896,575 + DZA65_RS04295 0.11 +0.8 896,622 + DZA65_RS04295 0.27 +0.4 896,622 + DZA65_RS04295 0.27 +0.5 896,661 - DZA65_RS04295 0.41 +1.5 896,703 + DZA65_RS04295 0.56 -0.4 896,705 + DZA65_RS04295 0.56 +0.1 896,705 + DZA65_RS04295 0.56 -1.6 896,706 - DZA65_RS04295 0.57 +0.2 896,835 + +0.6 896,855 - +0.6 896,879 + +0.7 896,906 - -0.9 896,917 - -1.7 896,945 + -2.7 896,946 - +1.1 896,946 - +0.5 896,946 - +0.8 896,984 + +1.5 896,984 + +0.2 896,985 - -0.8 896,985 - +1.6 896,985 - +1.2 896,985 - +1.0 896,987 - +1.0 897,006 - +0.8 897,076 + -0.1 897,108 - -1.0 897,175 + +0.6 897,216 - -1.4 897,220 - -1.3 897,229 + +0.6 897,293 + DZA65_RS04300 0.16 -1.7 897,293 + DZA65_RS04300 0.16 -1.4 897,294 - DZA65_RS04300 0.16 -1.5 897,294 - DZA65_RS04300 0.16 -1.0 897,294 - DZA65_RS04300 0.16 +1.2 897,294 - DZA65_RS04300 0.16 +2.4 897,294 - DZA65_RS04300 0.16 +0.5 897,294 - DZA65_RS04300 0.16 -0.9 897,294 - DZA65_RS04300 0.16 -1.1 897,294 - DZA65_RS04300 0.16 +0.4 897,294 - DZA65_RS04300 0.16 +0.6 897,295 + DZA65_RS04300 0.16 +0.6 897,296 - +0.6 897,312 - DZA65_RS04300 0.18 -0.6 897,312 - DZA65_RS04300 0.18 -0.2 897,312 - DZA65_RS04300 0.18 -0.4 897,317 + DZA65_RS04300 0.19 -0.6 897,318 - DZA65_RS04300 0.19 +0.8 897,326 - DZA65_RS04300 0.20 -0.2
Or see this region's nucleotide sequence