Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04110

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04100 and DZA65_RS04105 overlap by 4 nucleotidesDZA65_RS04105 and DZA65_RS04110 overlap by 4 nucleotidesDZA65_RS04110 and DZA65_RS04115 are separated by 2 nucleotides DZA65_RS04100: DZA65_RS04100 - head completion/stabilization protein, at 865,797 to 866,249 _RS04100 DZA65_RS04105: DZA65_RS04105 - phage tail protein, at 866,246 to 866,743 _RS04105 DZA65_RS04110: DZA65_RS04110 - hypothetical protein, at 866,740 to 867,444 _RS04110 DZA65_RS04115: DZA65_RS04115 - DUF2586 domain-containing protein, at 867,447 to 868,562 _RS04115 Position (kb) 866 867 868Strain fitness (log2 ratio) -2 -1 0 1 2at 865.785 kb on + strandat 865.822 kb on - strandat 865.834 kb on + strandat 865.834 kb on + strandat 865.834 kb on + strandat 865.835 kb on - strandat 865.835 kb on - strandat 866.006 kb on + strand, within DZA65_RS04100at 866.007 kb on - strand, within DZA65_RS04100at 866.245 kb on + strandat 866.245 kb on + strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.246 kb on - strandat 866.466 kb on + strand, within DZA65_RS04105at 866.501 kb on + strand, within DZA65_RS04105at 866.501 kb on + strand, within DZA65_RS04105at 866.501 kb on + strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.502 kb on - strand, within DZA65_RS04105at 866.783 kb on + strandat 866.783 kb on + strandat 866.783 kb on + strandat 866.783 kb on + strandat 866.784 kb on - strandat 866.784 kb on - strandat 866.784 kb on - strandat 866.784 kb on - strandat 866.784 kb on - strandat 866.834 kb on + strand, within DZA65_RS04110at 866.835 kb on - strand, within DZA65_RS04110at 866.835 kb on - strand, within DZA65_RS04110at 866.835 kb on - strand, within DZA65_RS04110at 867.016 kb on + strand, within DZA65_RS04110at 867.017 kb on - strand, within DZA65_RS04110at 867.021 kb on - strand, within DZA65_RS04110at 867.021 kb on - strandat 867.021 kb on - strand, within DZA65_RS04110at 867.076 kb on + strand, within DZA65_RS04110at 867.076 kb on + strand, within DZA65_RS04110at 867.275 kb on + strand, within DZA65_RS04110at 867.275 kb on + strand, within DZA65_RS04110at 867.276 kb on - strand, within DZA65_RS04110at 867.285 kb on + strand, within DZA65_RS04110at 867.286 kb on - strand, within DZA65_RS04110at 867.286 kb on - strand, within DZA65_RS04110at 867.286 kb on - strand, within DZA65_RS04110at 867.286 kb on - strand, within DZA65_RS04110at 867.286 kb on - strand, within DZA65_RS04110at 867.323 kb on + strand, within DZA65_RS04110at 867.323 kb on + strand, within DZA65_RS04110at 867.323 kb on + strand, within DZA65_RS04110at 867.323 kb on + strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.324 kb on - strand, within DZA65_RS04110at 867.369 kb on + strand, within DZA65_RS04110at 867.487 kb on + strandat 867.487 kb on + strandat 867.487 kb on + strandat 867.487 kb on + strandat 867.487 kb on + strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.488 kb on - strandat 867.528 kb on - strandat 867.891 kb on + strand, within DZA65_RS04115at 867.891 kb on + strand, within DZA65_RS04115at 867.891 kb on + strand, within DZA65_RS04115at 867.891 kb on + strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.892 kb on - strand, within DZA65_RS04115at 867.895 kb on + strand, within DZA65_RS04115at 867.895 kb on + strand, within DZA65_RS04115at 867.909 kb on - strand, within DZA65_RS04115at 867.913 kb on + strand, within DZA65_RS04115at 868.051 kb on + strand, within DZA65_RS04115at 868.076 kb on - strand, within DZA65_RS04115at 868.076 kb on - strand, within DZA65_RS04115at 868.141 kb on - strand, within DZA65_RS04115at 868.158 kb on + strand, within DZA65_RS04115at 868.168 kb on - strand, within DZA65_RS04115at 868.176 kb on + strand, within DZA65_RS04115at 868.177 kb on - strand, within DZA65_RS04115at 868.177 kb on - strand, within DZA65_RS04115at 868.179 kb on + strand, within DZA65_RS04115at 868.179 kb on + strand, within DZA65_RS04115at 868.179 kb on + strand, within DZA65_RS04115at 868.180 kb on - strand, within DZA65_RS04115at 868.180 kb on - strand, within DZA65_RS04115at 868.180 kb on - strand, within DZA65_RS04115at 868.180 kb on - strand, within DZA65_RS04115at 868.222 kb on - strand, within DZA65_RS04115at 868.316 kb on + strand, within DZA65_RS04115at 868.317 kb on - strand, within DZA65_RS04115at 868.317 kb on - strand, within DZA65_RS04115at 868.347 kb on + strand, within DZA65_RS04115at 868.348 kb on - strand, within DZA65_RS04115

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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865,785 + -0.5
865,822 - +0.0
865,834 + -0.7
865,834 + -2.1
865,834 + -0.0
865,835 - +0.5
865,835 - -0.9
866,006 + DZA65_RS04100 0.46 +1.1
866,007 - DZA65_RS04100 0.46 -0.4
866,245 + -0.4
866,245 + -1.4
866,246 - -0.4
866,246 - -1.7
866,246 - +0.3
866,246 - +1.0
866,246 - -0.1
866,246 - -0.7
866,466 + DZA65_RS04105 0.44 +0.2
866,501 + DZA65_RS04105 0.51 -0.1
866,501 + DZA65_RS04105 0.51 -0.7
866,501 + DZA65_RS04105 0.51 -2.4
866,502 - DZA65_RS04105 0.51 -0.2
866,502 - DZA65_RS04105 0.51 +0.3
866,502 - DZA65_RS04105 0.51 +0.5
866,502 - DZA65_RS04105 0.51 -1.2
866,502 - DZA65_RS04105 0.51 -0.1
866,502 - DZA65_RS04105 0.51 -0.2
866,783 + +1.1
866,783 + -0.9
866,783 + -0.4
866,783 + +0.2
866,784 - +0.4
866,784 - -1.7
866,784 - +0.6
866,784 - +0.1
866,784 - -2.2
866,834 + DZA65_RS04110 0.13 -0.2
866,835 - DZA65_RS04110 0.13 -1.7
866,835 - DZA65_RS04110 0.13 -1.0
866,835 - DZA65_RS04110 0.13 -1.8
867,016 + DZA65_RS04110 0.39 +1.6
867,017 - DZA65_RS04110 0.39 -0.7
867,021 - DZA65_RS04110 0.40 -0.8
867,021 - +0.6
867,021 - DZA65_RS04110 0.40 -1.0
867,076 + DZA65_RS04110 0.48 -0.5
867,076 + DZA65_RS04110 0.48 -1.0
867,275 + DZA65_RS04110 0.76 +0.0
867,275 + DZA65_RS04110 0.76 +0.2
867,276 - DZA65_RS04110 0.76 +0.6
867,285 + DZA65_RS04110 0.77 -1.4
867,286 - DZA65_RS04110 0.77 -0.8
867,286 - DZA65_RS04110 0.77 -1.4
867,286 - DZA65_RS04110 0.77 -0.6
867,286 - DZA65_RS04110 0.77 +0.1
867,286 - DZA65_RS04110 0.77 -1.0
867,323 + DZA65_RS04110 0.83 -1.5
867,323 + DZA65_RS04110 0.83 -0.6
867,323 + DZA65_RS04110 0.83 -0.2
867,323 + DZA65_RS04110 0.83 +0.2
867,324 - DZA65_RS04110 0.83 -0.7
867,324 - DZA65_RS04110 0.83 +1.0
867,324 - DZA65_RS04110 0.83 +0.1
867,324 - DZA65_RS04110 0.83 +0.1
867,324 - DZA65_RS04110 0.83 -0.1
867,324 - DZA65_RS04110 0.83 -2.2
867,324 - DZA65_RS04110 0.83 +2.4
867,324 - DZA65_RS04110 0.83 -0.1
867,369 + DZA65_RS04110 0.89 +0.4
867,487 + -0.1
867,487 + -0.1
867,487 + +0.8
867,487 + +0.6
867,487 + -0.4
867,488 - +2.2
867,488 - -0.4
867,488 - +0.4
867,488 - -2.0
867,488 - +1.0
867,488 - +0.9
867,488 - +0.8
867,528 - -2.7
867,891 + DZA65_RS04115 0.40 +0.0
867,891 + DZA65_RS04115 0.40 +0.8
867,891 + DZA65_RS04115 0.40 -1.2
867,891 + DZA65_RS04115 0.40 -0.3
867,892 - DZA65_RS04115 0.40 -0.5
867,892 - DZA65_RS04115 0.40 +0.8
867,892 - DZA65_RS04115 0.40 +0.0
867,892 - DZA65_RS04115 0.40 +0.2
867,892 - DZA65_RS04115 0.40 -1.2
867,892 - DZA65_RS04115 0.40 +1.2
867,895 + DZA65_RS04115 0.40 +0.3
867,895 + DZA65_RS04115 0.40 -0.6
867,909 - DZA65_RS04115 0.41 +0.6
867,913 + DZA65_RS04115 0.42 -0.3
868,051 + DZA65_RS04115 0.54 +0.4
868,076 - DZA65_RS04115 0.56 -0.2
868,076 - DZA65_RS04115 0.56 -1.0
868,141 - DZA65_RS04115 0.62 -0.6
868,158 + DZA65_RS04115 0.64 +1.4
868,168 - DZA65_RS04115 0.65 -0.2
868,176 + DZA65_RS04115 0.65 -0.7
868,177 - DZA65_RS04115 0.65 +0.3
868,177 - DZA65_RS04115 0.65 -0.4
868,179 + DZA65_RS04115 0.66 -0.1
868,179 + DZA65_RS04115 0.66 +0.3
868,179 + DZA65_RS04115 0.66 +0.2
868,180 - DZA65_RS04115 0.66 -0.7
868,180 - DZA65_RS04115 0.66 -0.2
868,180 - DZA65_RS04115 0.66 -0.4
868,180 - DZA65_RS04115 0.66 -0.4
868,222 - DZA65_RS04115 0.69 -1.2
868,316 + DZA65_RS04115 0.78 -1.3
868,317 - DZA65_RS04115 0.78 +0.6
868,317 - DZA65_RS04115 0.78 -0.1
868,347 + DZA65_RS04115 0.81 +0.0
868,348 - DZA65_RS04115 0.81 -0.2

Or see this region's nucleotide sequence