Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03870

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03865 and DZA65_RS03870 are separated by 85 nucleotidesDZA65_RS03870 and DZA65_RS03875 are separated by 56 nucleotides DZA65_RS03865: DZA65_RS03865 - inositol 2-dehydrogenase, at 820,490 to 821,476 _RS03865 DZA65_RS03870: DZA65_RS03870 - sugar ABC transporter substrate-binding protein, at 821,562 to 822,500 _RS03870 DZA65_RS03875: DZA65_RS03875 - sugar ABC transporter ATP-binding protein, at 822,557 to 824,104 _RS03875 Position (kb) 821 822 823Strain fitness (log2 ratio) -2 -1 0 1 2at 820.575 kb on - strandat 820.575 kb on - strandat 820.575 kb on - strandat 820.575 kb on - strandat 820.625 kb on + strand, within DZA65_RS03865at 820.625 kb on + strand, within DZA65_RS03865at 820.626 kb on - strand, within DZA65_RS03865at 820.626 kb on - strand, within DZA65_RS03865at 820.674 kb on + strand, within DZA65_RS03865at 820.690 kb on - strand, within DZA65_RS03865at 820.690 kb on - strand, within DZA65_RS03865at 820.856 kb on + strand, within DZA65_RS03865at 820.931 kb on - strand, within DZA65_RS03865at 820.931 kb on - strand, within DZA65_RS03865at 820.931 kb on - strand, within DZA65_RS03865at 820.931 kb on - strand, within DZA65_RS03865at 820.931 kb on - strand, within DZA65_RS03865at 820.931 kb on - strand, within DZA65_RS03865at 820.964 kb on + strand, within DZA65_RS03865at 820.964 kb on + strand, within DZA65_RS03865at 820.965 kb on - strand, within DZA65_RS03865at 820.965 kb on - strand, within DZA65_RS03865at 820.965 kb on - strand, within DZA65_RS03865at 820.965 kb on - strand, within DZA65_RS03865at 820.965 kb on - strand, within DZA65_RS03865at 820.965 kb on - strand, within DZA65_RS03865at 820.965 kb on - strand, within DZA65_RS03865at 821.032 kb on + strand, within DZA65_RS03865at 821.032 kb on + strand, within DZA65_RS03865at 821.079 kb on + strand, within DZA65_RS03865at 821.080 kb on - strand, within DZA65_RS03865at 821.080 kb on - strand, within DZA65_RS03865at 821.333 kb on + strand, within DZA65_RS03865at 821.420 kb on + strandat 821.421 kb on - strandat 821.421 kb on - strandat 821.421 kb on - strandat 821.421 kb on - strandat 821.479 kb on + strandat 821.479 kb on + strandat 821.479 kb on + strandat 821.480 kb on - strandat 821.480 kb on - strandat 821.480 kb on - strandat 821.480 kb on - strandat 821.480 kb on - strandat 821.483 kb on + strandat 821.483 kb on + strandat 821.483 kb on + strandat 821.483 kb on + strandat 821.483 kb on + strandat 821.484 kb on - strandat 821.484 kb on - strandat 821.484 kb on - strandat 821.484 kb on - strandat 821.484 kb on - strandat 821.484 kb on - strandat 821.484 kb on - strandat 821.484 kb on - strandat 821.484 kb on - strandat 821.484 kb on - strandat 821.514 kb on + strandat 821.515 kb on - strandat 821.515 kb on - strandat 821.528 kb on + strandat 821.528 kb on + strandat 821.528 kb on + strandat 821.529 kb on - strandat 821.529 kb on - strandat 821.529 kb on - strandat 821.529 kb on - strandat 821.529 kb on - strandat 821.572 kb on + strandat 821.572 kb on + strandat 821.573 kb on - strandat 821.946 kb on + strand, within DZA65_RS03870at 821.946 kb on + strand, within DZA65_RS03870at 821.946 kb on + strand, within DZA65_RS03870at 821.946 kb on + strand, within DZA65_RS03870at 821.946 kb on + strand, within DZA65_RS03870at 821.946 kb on + strand, within DZA65_RS03870at 821.946 kb on + strand, within DZA65_RS03870at 821.946 kb on + strand, within DZA65_RS03870at 821.947 kb on - strand, within DZA65_RS03870at 821.947 kb on - strand, within DZA65_RS03870at 821.947 kb on - strand, within DZA65_RS03870at 821.947 kb on - strand, within DZA65_RS03870at 821.947 kb on - strand, within DZA65_RS03870at 821.947 kb on - strand, within DZA65_RS03870at 822.053 kb on + strand, within DZA65_RS03870at 822.053 kb on + strand, within DZA65_RS03870at 822.054 kb on - strand, within DZA65_RS03870at 822.054 kb on - strand, within DZA65_RS03870at 822.054 kb on - strand, within DZA65_RS03870at 822.054 kb on - strand, within DZA65_RS03870at 822.097 kb on - strand, within DZA65_RS03870at 822.398 kb on + strand, within DZA65_RS03870at 822.398 kb on + strand, within DZA65_RS03870at 822.398 kb on + strand, within DZA65_RS03870at 822.399 kb on - strand, within DZA65_RS03870at 822.399 kb on - strand, within DZA65_RS03870at 822.498 kb on + strandat 822.499 kb on - strandat 822.499 kb on - strandat 822.499 kb on - strandat 822.499 kb on - strandat 822.578 kb on - strandat 822.692 kb on - strandat 822.692 kb on - strandat 822.816 kb on - strand, within DZA65_RS03875at 822.816 kb on - strand, within DZA65_RS03875at 822.944 kb on + strand, within DZA65_RS03875at 822.944 kb on + strand, within DZA65_RS03875at 822.945 kb on - strand, within DZA65_RS03875at 822.945 kb on - strand, within DZA65_RS03875at 822.945 kb on - strand, within DZA65_RS03875at 822.945 kb on - strand, within DZA65_RS03875at 822.960 kb on + strand, within DZA65_RS03875at 822.960 kb on + strand, within DZA65_RS03875at 822.960 kb on + strand, within DZA65_RS03875at 822.960 kb on + strand, within DZA65_RS03875at 822.960 kb on + strand, within DZA65_RS03875at 822.960 kb on + strand, within DZA65_RS03875at 822.960 kb on + strand, within DZA65_RS03875at 822.961 kb on - strand, within DZA65_RS03875at 822.961 kb on - strand, within DZA65_RS03875at 822.961 kb on - strand, within DZA65_RS03875at 822.961 kb on - strand, within DZA65_RS03875at 822.961 kb on - strand, within DZA65_RS03875at 822.961 kb on - strand, within DZA65_RS03875at 823.148 kb on + strand, within DZA65_RS03875at 823.148 kb on + strand, within DZA65_RS03875at 823.148 kb on + strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.149 kb on - strand, within DZA65_RS03875at 823.200 kb on + strand, within DZA65_RS03875at 823.422 kb on + strand, within DZA65_RS03875at 823.422 kb on + strand, within DZA65_RS03875at 823.422 kb on + strand, within DZA65_RS03875at 823.423 kb on - strand, within DZA65_RS03875at 823.423 kb on - strand, within DZA65_RS03875at 823.426 kb on + strand, within DZA65_RS03875at 823.426 kb on + strand, within DZA65_RS03875at 823.426 kb on + strand, within DZA65_RS03875at 823.427 kb on - strand, within DZA65_RS03875at 823.427 kb on - strand, within DZA65_RS03875

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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820,575 - +1.3
820,575 - -2.3
820,575 - +0.7
820,575 - -0.9
820,625 + DZA65_RS03865 0.14 +1.4
820,625 + DZA65_RS03865 0.14 -0.3
820,626 - DZA65_RS03865 0.14 -0.3
820,626 - DZA65_RS03865 0.14 +0.1
820,674 + DZA65_RS03865 0.19 -0.9
820,690 - DZA65_RS03865 0.20 +0.0
820,690 - DZA65_RS03865 0.20 +1.1
820,856 + DZA65_RS03865 0.37 +1.3
820,931 - DZA65_RS03865 0.45 -2.0
820,931 - DZA65_RS03865 0.45 -0.2
820,931 - DZA65_RS03865 0.45 +0.7
820,931 - DZA65_RS03865 0.45 +1.2
820,931 - DZA65_RS03865 0.45 -0.7
820,931 - DZA65_RS03865 0.45 -1.9
820,964 + DZA65_RS03865 0.48 +0.0
820,964 + DZA65_RS03865 0.48 +1.2
820,965 - DZA65_RS03865 0.48 +0.1
820,965 - DZA65_RS03865 0.48 -0.9
820,965 - DZA65_RS03865 0.48 +1.7
820,965 - DZA65_RS03865 0.48 +0.3
820,965 - DZA65_RS03865 0.48 -0.1
820,965 - DZA65_RS03865 0.48 +0.7
820,965 - DZA65_RS03865 0.48 -0.0
821,032 + DZA65_RS03865 0.55 +0.3
821,032 + DZA65_RS03865 0.55 +0.3
821,079 + DZA65_RS03865 0.60 +1.0
821,080 - DZA65_RS03865 0.60 +0.7
821,080 - DZA65_RS03865 0.60 +0.1
821,333 + DZA65_RS03865 0.85 -0.9
821,420 + -0.3
821,421 - -0.4
821,421 - -0.6
821,421 - -0.2
821,421 - -1.8
821,479 + -0.9
821,479 + +0.1
821,479 + -0.6
821,480 - +0.7
821,480 - +0.2
821,480 - -0.7
821,480 - -0.6
821,480 - -1.0
821,483 + -1.8
821,483 + -0.3
821,483 + -1.9
821,483 + -0.7
821,483 + -0.5
821,484 - -0.7
821,484 - +0.4
821,484 - +0.7
821,484 - -1.8
821,484 - -0.5
821,484 - -0.1
821,484 - -0.5
821,484 - -0.7
821,484 - +0.3
821,484 - -0.7
821,514 + +0.2
821,515 - +0.5
821,515 - -0.2
821,528 + -0.2
821,528 + +1.6
821,528 + -0.2
821,529 - +0.7
821,529 - -1.2
821,529 - +2.1
821,529 - -0.3
821,529 - -1.2
821,572 + -1.8
821,572 + -2.2
821,573 - +0.2
821,946 + DZA65_RS03870 0.41 +0.1
821,946 + DZA65_RS03870 0.41 -0.7
821,946 + DZA65_RS03870 0.41 -0.9
821,946 + DZA65_RS03870 0.41 -0.3
821,946 + DZA65_RS03870 0.41 -2.7
821,946 + DZA65_RS03870 0.41 -1.9
821,946 + DZA65_RS03870 0.41 -0.9
821,946 + DZA65_RS03870 0.41 +0.1
821,947 - DZA65_RS03870 0.41 -0.3
821,947 - DZA65_RS03870 0.41 -2.2
821,947 - DZA65_RS03870 0.41 -0.3
821,947 - DZA65_RS03870 0.41 -1.3
821,947 - DZA65_RS03870 0.41 -0.1
821,947 - DZA65_RS03870 0.41 -1.5
822,053 + DZA65_RS03870 0.52 -0.2
822,053 + DZA65_RS03870 0.52 +1.3
822,054 - DZA65_RS03870 0.52 +0.4
822,054 - DZA65_RS03870 0.52 +1.7
822,054 - DZA65_RS03870 0.52 +1.5
822,054 - DZA65_RS03870 0.52 +1.5
822,097 - DZA65_RS03870 0.57 -0.2
822,398 + DZA65_RS03870 0.89 -2.3
822,398 + DZA65_RS03870 0.89 -0.1
822,398 + DZA65_RS03870 0.89 +0.2
822,399 - DZA65_RS03870 0.89 -0.8
822,399 - DZA65_RS03870 0.89 -1.7
822,498 + +0.4
822,499 - +0.7
822,499 - +0.4
822,499 - -0.8
822,499 - -0.0
822,578 - -0.2
822,692 - -1.1
822,692 - -0.9
822,816 - DZA65_RS03875 0.17 +0.3
822,816 - DZA65_RS03875 0.17 -0.2
822,944 + DZA65_RS03875 0.25 -0.1
822,944 + DZA65_RS03875 0.25 -0.5
822,945 - DZA65_RS03875 0.25 +0.8
822,945 - DZA65_RS03875 0.25 +0.7
822,945 - DZA65_RS03875 0.25 +0.4
822,945 - DZA65_RS03875 0.25 -1.9
822,960 + DZA65_RS03875 0.26 +2.2
822,960 + DZA65_RS03875 0.26 -1.2
822,960 + DZA65_RS03875 0.26 +0.2
822,960 + DZA65_RS03875 0.26 +0.2
822,960 + DZA65_RS03875 0.26 -0.7
822,960 + DZA65_RS03875 0.26 +0.2
822,960 + DZA65_RS03875 0.26 -0.5
822,961 - DZA65_RS03875 0.26 +0.7
822,961 - DZA65_RS03875 0.26 -0.2
822,961 - DZA65_RS03875 0.26 -0.4
822,961 - DZA65_RS03875 0.26 +0.7
822,961 - DZA65_RS03875 0.26 +0.7
822,961 - DZA65_RS03875 0.26 +0.5
823,148 + DZA65_RS03875 0.38 +0.7
823,148 + DZA65_RS03875 0.38 -0.5
823,148 + DZA65_RS03875 0.38 +0.1
823,149 - DZA65_RS03875 0.38 -0.9
823,149 - DZA65_RS03875 0.38 +0.1
823,149 - DZA65_RS03875 0.38 -1.6
823,149 - DZA65_RS03875 0.38 +0.5
823,149 - DZA65_RS03875 0.38 -0.1
823,149 - DZA65_RS03875 0.38 -1.1
823,149 - DZA65_RS03875 0.38 -1.0
823,149 - DZA65_RS03875 0.38 -1.9
823,149 - DZA65_RS03875 0.38 +1.7
823,149 - DZA65_RS03875 0.38 -0.7
823,149 - DZA65_RS03875 0.38 -0.6
823,149 - DZA65_RS03875 0.38 +0.8
823,149 - DZA65_RS03875 0.38 -2.2
823,200 + DZA65_RS03875 0.42 -0.4
823,422 + DZA65_RS03875 0.56 -0.3
823,422 + DZA65_RS03875 0.56 +0.5
823,422 + DZA65_RS03875 0.56 +0.3
823,423 - DZA65_RS03875 0.56 -0.0
823,423 - DZA65_RS03875 0.56 -1.0
823,426 + DZA65_RS03875 0.56 +1.4
823,426 + DZA65_RS03875 0.56 -0.0
823,426 + DZA65_RS03875 0.56 +1.1
823,427 - DZA65_RS03875 0.56 -0.1
823,427 - DZA65_RS03875 0.56 -0.1

Or see this region's nucleotide sequence