Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03795 and DZA65_RS03800 are separated by 561 nucleotides DZA65_RS03800 and DZA65_RS03805 are separated by 142 nucleotides DZA65_RS03805 and DZA65_RS03810 are separated by 108 nucleotides
DZA65_RS03795: DZA65_RS03795 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 803,329 to 806,862
_RS03795
DZA65_RS03800: DZA65_RS03800 - hypothetical protein, at 807,424 to 807,846
_RS03800
DZA65_RS03805: DZA65_RS03805 - GNAT family N-acetyltransferase, at 807,989 to 808,534
_RS03805
DZA65_RS03810: DZA65_RS03810 - YnfC family lipoprotein, at 808,643 to 809,368
_RS03810
Position (kb) 807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 806.582 kb on + strand at 806.582 kb on + strand at 806.582 kb on + strand at 806.583 kb on - strand at 806.583 kb on - strand at 806.583 kb on - strand at 806.622 kb on + strand at 806.622 kb on + strand at 806.622 kb on + strand at 806.623 kb on - strand at 806.623 kb on - strand at 806.623 kb on - strand at 806.712 kb on + strand at 806.713 kb on - strand at 806.713 kb on - strand at 806.713 kb on - strand at 806.724 kb on + strand at 806.724 kb on + strand at 806.724 kb on + strand at 806.724 kb on + strand at 806.725 kb on - strand at 806.725 kb on - strand at 806.792 kb on + strand at 806.793 kb on - strand at 806.793 kb on - strand at 806.793 kb on - strand at 806.797 kb on - strand at 806.797 kb on - strand at 806.803 kb on - strand at 806.867 kb on + strand at 806.867 kb on + strand at 806.867 kb on + strand at 806.867 kb on + strand at 806.867 kb on + strand at 806.867 kb on + strand at 806.868 kb on - strand at 806.868 kb on - strand at 806.868 kb on - strand at 806.868 kb on - strand at 806.897 kb on - strand at 806.907 kb on + strand at 806.907 kb on + strand at 806.907 kb on + strand at 806.907 kb on + strand at 806.908 kb on - strand at 806.908 kb on - strand at 806.908 kb on - strand at 806.910 kb on + strand at 806.910 kb on + strand at 806.910 kb on + strand at 806.910 kb on + strand at 806.910 kb on + strand at 806.911 kb on - strand at 806.911 kb on - strand at 806.911 kb on - strand at 806.942 kb on - strand at 806.943 kb on + strand at 806.943 kb on + strand at 806.943 kb on + strand at 806.944 kb on - strand at 806.944 kb on - strand at 806.970 kb on + strand at 807.007 kb on + strand at 807.007 kb on + strand at 807.008 kb on - strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.087 kb on + strand at 807.088 kb on - strand at 807.088 kb on - strand at 807.103 kb on + strand at 807.103 kb on + strand at 807.104 kb on - strand at 807.104 kb on - strand at 807.104 kb on - strand at 807.104 kb on - strand at 807.104 kb on - strand at 807.129 kb on + strand at 807.129 kb on + strand at 807.130 kb on - strand at 807.130 kb on - strand at 807.130 kb on - strand at 807.130 kb on - strand at 807.130 kb on - strand at 807.132 kb on + strand at 807.132 kb on + strand at 807.132 kb on + strand at 807.132 kb on + strand at 807.133 kb on - strand at 807.133 kb on - strand at 807.137 kb on + strand at 807.137 kb on + strand at 807.137 kb on + strand at 807.137 kb on + strand at 807.138 kb on - strand at 807.138 kb on - strand at 807.138 kb on - strand at 807.157 kb on + strand at 807.157 kb on + strand at 807.157 kb on + strand at 807.157 kb on + strand at 807.157 kb on + strand at 807.157 kb on + strand at 807.158 kb on - strand at 807.158 kb on - strand at 807.158 kb on - strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.159 kb on + strand at 807.160 kb on - strand at 807.160 kb on - strand at 807.160 kb on - strand at 807.160 kb on - strand at 807.160 kb on - strand at 807.269 kb on - strand at 807.269 kb on - strand at 807.269 kb on - strand at 807.269 kb on - strand at 807.269 kb on - strand at 807.278 kb on + strand at 807.278 kb on + strand at 807.278 kb on + strand at 807.278 kb on + strand at 807.279 kb on - strand at 807.361 kb on + strand at 807.361 kb on + strand at 807.361 kb on + strand at 807.362 kb on - strand at 807.362 kb on - strand at 807.362 kb on - strand at 807.362 kb on - strand at 807.362 kb on - strand at 807.372 kb on + strand at 807.423 kb on + strand at 807.423 kb on + strand at 807.423 kb on + strand at 807.423 kb on + strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.424 kb on - strand at 807.430 kb on - strand at 807.458 kb on + strand at 807.458 kb on + strand at 807.459 kb on - strand at 807.459 kb on - strand at 807.459 kb on - strand at 807.461 kb on + strand at 807.484 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.501 kb on + strand, within DZA65_RS03800 at 807.502 kb on - strand, within DZA65_RS03800 at 807.502 kb on - strand, within DZA65_RS03800 at 807.502 kb on - strand at 807.502 kb on - strand, within DZA65_RS03800 at 807.502 kb on - strand, within DZA65_RS03800 at 807.502 kb on - strand, within DZA65_RS03800 at 807.510 kb on + strand, within DZA65_RS03800 at 807.510 kb on + strand, within DZA65_RS03800 at 807.510 kb on + strand, within DZA65_RS03800 at 807.510 kb on + strand, within DZA65_RS03800 at 807.511 kb on - strand, within DZA65_RS03800 at 807.511 kb on - strand, within DZA65_RS03800 at 807.511 kb on - strand, within DZA65_RS03800 at 807.511 kb on - strand, within DZA65_RS03800 at 807.511 kb on - strand at 807.511 kb on - strand, within DZA65_RS03800 at 807.578 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand, within DZA65_RS03800 at 807.597 kb on + strand at 807.598 kb on - strand, within DZA65_RS03800 at 807.598 kb on - strand, within DZA65_RS03800 at 807.598 kb on - strand, within DZA65_RS03800 at 807.598 kb on - strand, within DZA65_RS03800 at 807.598 kb on - strand, within DZA65_RS03800 at 807.598 kb on - strand, within DZA65_RS03800 at 807.601 kb on + strand, within DZA65_RS03800 at 807.602 kb on - strand, within DZA65_RS03800 at 807.655 kb on + strand, within DZA65_RS03800 at 807.748 kb on + strand, within DZA65_RS03800 at 807.756 kb on + strand, within DZA65_RS03800 at 807.791 kb on - strand, within DZA65_RS03800 at 807.800 kb on - strand, within DZA65_RS03800 at 807.838 kb on + strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.869 kb on + strand at 807.869 kb on + strand at 807.869 kb on + strand at 807.870 kb on - strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.937 kb on - strand at 808.193 kb on + strand, within DZA65_RS03805 at 808.335 kb on + strand, within DZA65_RS03805 at 808.336 kb on - strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.500 kb on - strand at 808.500 kb on - strand at 808.500 kb on - strand at 808.574 kb on + strand at 808.575 kb on - strand at 808.575 kb on - strand at 808.575 kb on - strand at 808.580 kb on + strand at 808.580 kb on + strand at 808.580 kb on + strand at 808.581 kb on - strand at 808.581 kb on - strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.605 kb on - strand at 808.627 kb on - strand at 808.627 kb on - strand at 808.627 kb on - strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.643 kb on - strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.651 kb on - strand at 808.651 kb on - strand at 808.678 kb on - strand at 808.678 kb on - strand at 808.680 kb on + strand at 808.681 kb on - strand at 808.681 kb on - strand at 808.681 kb on - strand at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 806,582 + -1.1 806,582 + -1.0 806,582 + +0.8 806,583 - -0.7 806,583 - -1.1 806,583 - +0.2 806,622 + +1.1 806,622 + -0.3 806,622 + -1.7 806,623 - -0.6 806,623 - -0.5 806,623 - -0.8 806,712 + -0.5 806,713 - +1.1 806,713 - +0.6 806,713 - +0.9 806,724 + +1.5 806,724 + -0.7 806,724 + +0.2 806,724 + +0.3 806,725 - -1.0 806,725 - +0.5 806,792 + +0.5 806,793 - +0.9 806,793 - -0.0 806,793 - -1.5 806,797 - +2.0 806,797 - -0.2 806,803 - -0.9 806,867 + -0.1 806,867 + -1.9 806,867 + +1.0 806,867 + +0.7 806,867 + -0.7 806,867 + -0.2 806,868 - +0.3 806,868 - +1.2 806,868 - -0.0 806,868 - -0.6 806,897 - -2.1 806,907 + -0.5 806,907 + -0.8 806,907 + -0.2 806,907 + -1.7 806,908 - +1.7 806,908 - -0.9 806,908 - +0.3 806,910 + +1.0 806,910 + +0.5 806,910 + +0.1 806,910 + -0.0 806,910 + -0.1 806,911 - -0.3 806,911 - -1.5 806,911 - -1.3 806,942 - +0.4 806,943 + -1.1 806,943 + +0.5 806,943 + -0.3 806,944 - +0.3 806,944 - -0.2 806,970 + -0.1 807,007 + -2.8 807,007 + -0.1 807,008 - +3.2 807,087 + -2.1 807,087 + +0.3 807,087 + +2.2 807,087 + -0.3 807,087 + -0.0 807,087 + +0.1 807,087 + -0.7 807,087 + -0.7 807,088 - +0.2 807,088 - +1.0 807,103 + +0.8 807,103 + +0.5 807,104 - +0.0 807,104 - -0.2 807,104 - -0.3 807,104 - -0.6 807,104 - -0.1 807,129 + +0.2 807,129 + +0.7 807,130 - -0.6 807,130 - -2.1 807,130 - -0.3 807,130 - +0.1 807,130 - +1.0 807,132 + -0.5 807,132 + -0.5 807,132 + -1.9 807,132 + +0.7 807,133 - -0.2 807,133 - +0.4 807,137 + +2.8 807,137 + -0.1 807,137 + +0.1 807,137 + +0.8 807,138 - -0.0 807,138 - -2.7 807,138 - -2.3 807,157 + +1.2 807,157 + +0.7 807,157 + +0.3 807,157 + -0.5 807,157 + -0.8 807,157 + -1.0 807,158 - -1.9 807,158 - -0.6 807,158 - -1.3 807,159 + +0.5 807,159 + -0.5 807,159 + +1.2 807,159 + -0.7 807,159 + -1.3 807,159 + +0.5 807,159 + -0.6 807,159 + -0.2 807,160 - -1.3 807,160 - +0.1 807,160 - -0.5 807,160 - +0.3 807,160 - -0.3 807,269 - +1.1 807,269 - +0.1 807,269 - +0.7 807,269 - -0.2 807,269 - -2.4 807,278 + +1.1 807,278 + +0.0 807,278 + +0.0 807,278 + +0.7 807,279 - +0.2 807,361 + +0.2 807,361 + +0.7 807,361 + -0.2 807,362 - +0.2 807,362 - -0.0 807,362 - +0.3 807,362 - +0.7 807,362 - +2.5 807,372 + +1.1 807,423 + -0.1 807,423 + -0.2 807,423 + +0.0 807,423 + -0.9 807,424 - +0.7 807,424 - +0.2 807,424 - +1.1 807,424 - -1.8 807,424 - +0.9 807,424 - +0.2 807,424 - +1.4 807,424 - +0.7 807,430 - +0.2 807,458 + -1.7 807,458 + +1.1 807,459 - -0.3 807,459 - -1.1 807,459 - -1.3 807,461 + +0.1 807,484 + DZA65_RS03800 0.14 +1.8 807,501 + DZA65_RS03800 0.18 -2.0 807,501 + DZA65_RS03800 0.18 -1.3 807,501 + DZA65_RS03800 0.18 -1.0 807,501 + DZA65_RS03800 0.18 +2.7 807,501 + DZA65_RS03800 0.18 -0.3 807,501 + DZA65_RS03800 0.18 +1.4 807,501 + DZA65_RS03800 0.18 +0.5 807,501 + DZA65_RS03800 0.18 -0.6 807,502 - DZA65_RS03800 0.18 -0.6 807,502 - DZA65_RS03800 0.18 -0.0 807,502 - +0.7 807,502 - DZA65_RS03800 0.18 -0.4 807,502 - DZA65_RS03800 0.18 +2.1 807,502 - DZA65_RS03800 0.18 +0.7 807,510 + DZA65_RS03800 0.20 -1.1 807,510 + DZA65_RS03800 0.20 +1.5 807,510 + DZA65_RS03800 0.20 +0.5 807,510 + DZA65_RS03800 0.20 +1.5 807,511 - DZA65_RS03800 0.21 -0.3 807,511 - DZA65_RS03800 0.21 +0.3 807,511 - DZA65_RS03800 0.21 -1.9 807,511 - DZA65_RS03800 0.21 +0.4 807,511 - +1.2 807,511 - DZA65_RS03800 0.21 +0.5 807,578 + DZA65_RS03800 0.36 +0.3 807,597 + DZA65_RS03800 0.41 +1.0 807,597 + DZA65_RS03800 0.41 +0.5 807,597 + DZA65_RS03800 0.41 +1.6 807,597 + DZA65_RS03800 0.41 -1.3 807,597 + DZA65_RS03800 0.41 -0.3 807,597 + DZA65_RS03800 0.41 -1.7 807,597 + +3.1 807,598 - DZA65_RS03800 0.41 -1.3 807,598 - DZA65_RS03800 0.41 +1.0 807,598 - DZA65_RS03800 0.41 +0.5 807,598 - DZA65_RS03800 0.41 +0.9 807,598 - DZA65_RS03800 0.41 -0.5 807,598 - DZA65_RS03800 0.41 +0.7 807,601 + DZA65_RS03800 0.42 +0.9 807,602 - DZA65_RS03800 0.42 +0.2 807,655 + DZA65_RS03800 0.55 -0.1 807,748 + DZA65_RS03800 0.77 -1.2 807,756 + DZA65_RS03800 0.78 -0.5 807,791 - DZA65_RS03800 0.87 -0.8 807,800 - DZA65_RS03800 0.89 +2.6 807,838 + +0.1 807,839 - -0.0 807,839 - -1.0 807,839 - -0.3 807,839 - -1.9 807,839 - -0.3 807,839 - -1.0 807,869 + -1.0 807,869 + +0.7 807,869 + +0.0 807,870 - +1.2 807,936 + -2.3 807,936 + -1.2 807,936 + +1.2 807,936 + +0.2 807,937 - -0.8 808,193 + DZA65_RS03805 0.37 +0.3 808,335 + DZA65_RS03805 0.63 +0.7 808,336 - DZA65_RS03805 0.64 -0.3 808,376 + DZA65_RS03805 0.71 -0.8 808,376 + DZA65_RS03805 0.71 +1.1 808,376 + DZA65_RS03805 0.71 -0.7 808,376 + DZA65_RS03805 0.71 +1.0 808,376 + DZA65_RS03805 0.71 -0.3 808,376 + DZA65_RS03805 0.71 +0.9 808,376 + DZA65_RS03805 0.71 +0.1 808,376 + DZA65_RS03805 0.71 +0.4 808,376 + DZA65_RS03805 0.71 -1.8 808,377 - DZA65_RS03805 0.71 -1.7 808,377 - DZA65_RS03805 0.71 +0.5 808,377 - DZA65_RS03805 0.71 -0.9 808,499 + -1.3 808,499 + -0.1 808,499 + -0.9 808,499 + +0.7 808,499 + +0.5 808,499 + +0.4 808,499 + +1.1 808,500 - -0.7 808,500 - -0.3 808,500 - +0.8 808,574 + -0.7 808,575 - -0.8 808,575 - -0.3 808,575 - -1.5 808,580 + +1.0 808,580 + -0.8 808,580 + +0.9 808,581 - -0.6 808,581 - -0.8 808,589 + -2.2 808,589 + -0.6 808,589 + +0.7 808,589 + +0.9 808,589 + +0.9 808,589 + -0.3 808,605 - -0.0 808,627 - -0.3 808,627 - -1.3 808,627 - -0.3 808,642 + -0.1 808,642 + -0.6 808,642 + +1.8 808,642 + -0.7 808,642 + +1.0 808,642 + -0.9 808,643 - +0.9 808,650 + -0.9 808,650 + -1.1 808,650 + -1.7 808,650 + +0.9 808,651 - +0.4 808,651 - -1.3 808,678 - -0.3 808,678 - -0.9 808,680 + -0.1 808,681 - +1.1 808,681 - +1.3 808,681 - +0.3 808,829 + DZA65_RS03810 0.26 +0.3 808,829 + DZA65_RS03810 0.26 -1.0 808,829 + DZA65_RS03810 0.26 +0.7 808,829 + DZA65_RS03810 0.26 -0.2 808,829 + DZA65_RS03810 0.26 -0.3 808,829 + DZA65_RS03810 0.26 -1.2 808,830 - DZA65_RS03810 0.26 -3.2 808,830 - DZA65_RS03810 0.26 +0.7 808,830 - DZA65_RS03810 0.26 -0.9 808,830 - DZA65_RS03810 0.26 -1.7 808,830 - DZA65_RS03810 0.26 +0.0 808,830 - DZA65_RS03810 0.26 -0.9
Or see this region's nucleotide sequence