Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03660 and DZA65_RS03665 are separated by 248 nucleotides DZA65_RS03665 and DZA65_RS03670 are separated by 255 nucleotides DZA65_RS03670 and DZA65_RS03675 are separated by 806 nucleotides
DZA65_RS03660: DZA65_RS03660 - sugar ABC transporter permease, at 770,402 to 771,292
_RS03660
DZA65_RS03665: DZA65_RS03665 - TOBE domain-containing protein, at 771,541 to 771,969
_RS03665
DZA65_RS03670: DZA65_RS03670 - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 772,225 to 773,145
_RS03670
DZA65_RS03675: DZA65_RS03675 - NCS2 family permease, at 773,952 to 775,319
_RS03675
Position (kb) 772
773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 771.225 kb on + strand at 771.225 kb on + strand at 771.298 kb on + strand at 771.298 kb on + strand at 771.298 kb on + strand at 771.330 kb on - strand at 771.342 kb on - strand at 771.342 kb on - strand at 771.342 kb on - strand at 771.355 kb on + strand at 771.355 kb on + strand at 771.355 kb on + strand at 771.355 kb on + strand at 771.355 kb on + strand at 771.356 kb on - strand at 771.356 kb on - strand at 771.356 kb on - strand at 771.356 kb on - strand at 771.356 kb on - strand at 771.356 kb on - strand at 771.371 kb on + strand at 771.371 kb on + strand at 771.372 kb on - strand at 771.421 kb on + strand at 771.422 kb on - strand at 771.422 kb on - strand at 771.426 kb on + strand at 771.426 kb on + strand at 771.448 kb on + strand at 771.449 kb on - strand at 771.449 kb on - strand at 771.492 kb on - strand at 771.492 kb on - strand at 771.493 kb on + strand at 771.493 kb on + strand at 771.494 kb on - strand at 771.494 kb on - strand at 771.494 kb on - strand at 771.494 kb on - strand at 771.497 kb on + strand at 771.497 kb on + strand at 771.498 kb on - strand at 771.498 kb on - strand at 771.498 kb on - strand at 771.498 kb on - strand at 771.511 kb on - strand at 771.526 kb on + strand at 771.527 kb on - strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.540 kb on + strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.541 kb on - strand at 771.620 kb on + strand at 771.648 kb on + strand, within DZA65_RS03665 at 771.834 kb on + strand, within DZA65_RS03665 at 771.835 kb on - strand, within DZA65_RS03665 at 771.835 kb on - strand, within DZA65_RS03665 at 771.887 kb on + strand, within DZA65_RS03665 at 771.888 kb on - strand, within DZA65_RS03665 at 772.008 kb on + strand at 772.008 kb on + strand at 772.009 kb on - strand at 772.009 kb on - strand at 772.096 kb on + strand at 772.096 kb on + strand at 772.097 kb on - strand at 772.097 kb on - strand at 772.180 kb on + strand at 772.180 kb on + strand at 772.180 kb on + strand at 772.181 kb on - strand at 772.181 kb on - strand at 772.181 kb on - strand at 772.181 kb on - strand at 772.181 kb on - strand at 772.181 kb on - strand at 772.188 kb on + strand at 772.370 kb on - strand, within DZA65_RS03670 at 772.550 kb on + strand, within DZA65_RS03670 at 772.620 kb on + strand, within DZA65_RS03670 at 772.620 kb on + strand, within DZA65_RS03670 at 772.621 kb on - strand, within DZA65_RS03670 at 772.621 kb on - strand, within DZA65_RS03670 at 772.695 kb on + strand, within DZA65_RS03670 at 772.695 kb on + strand, within DZA65_RS03670 at 772.696 kb on - strand, within DZA65_RS03670 at 772.899 kb on + strand, within DZA65_RS03670 at 772.970 kb on - strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.972 kb on - strand, within DZA65_RS03670 at 772.972 kb on - strand, within DZA65_RS03670 at 772.972 kb on - strand, within DZA65_RS03670 at 773.035 kb on + strand, within DZA65_RS03670 at 773.036 kb on - strand, within DZA65_RS03670 at 773.083 kb on + strand at 773.087 kb on + strand at 773.087 kb on + strand at 773.088 kb on - strand at 773.088 kb on - strand at 773.188 kb on + strand at 773.188 kb on + strand at 773.188 kb on + strand at 773.188 kb on + strand at 773.189 kb on - strand at 773.189 kb on - strand at 773.189 kb on - strand at 773.189 kb on - strand at 773.191 kb on + strand at 773.191 kb on + strand at 773.191 kb on + strand at 773.192 kb on - strand at 773.235 kb on + strand at 773.292 kb on + strand at 773.292 kb on + strand at 773.293 kb on - strand at 773.293 kb on - strand at 773.293 kb on - strand at 773.317 kb on + strand at 773.317 kb on + strand at 773.317 kb on + strand at 773.318 kb on - strand at 773.318 kb on - strand at 773.326 kb on + strand at 773.327 kb on - strand at 773.327 kb on - strand at 773.327 kb on - strand at 773.340 kb on - strand at 773.340 kb on - strand at 773.402 kb on + strand at 773.402 kb on + strand at 773.403 kb on - strand at 773.403 kb on - strand at 773.403 kb on - strand at 773.422 kb on + strand at 773.423 kb on - strand at 773.426 kb on + strand at 773.427 kb on - strand at 773.454 kb on + strand at 773.454 kb on + strand at 773.454 kb on + strand at 773.455 kb on - strand at 773.501 kb on + strand at 773.570 kb on - strand at 773.570 kb on - strand at 773.672 kb on + strand at 773.673 kb on - strand at 773.704 kb on + strand at 773.705 kb on - strand at 773.849 kb on - strand at 773.885 kb on - strand at 773.894 kb on + strand at 773.900 kb on + strand at 773.900 kb on + strand at 773.901 kb on - strand at 773.926 kb on - strand at 773.946 kb on + strand at 773.947 kb on - strand at 773.947 kb on - strand at 774.023 kb on + strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.091 kb on - strand, within DZA65_RS03675 at 774.122 kb on + strand, within DZA65_RS03675 at 774.123 kb on - strand, within DZA65_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 771,225 + +0.2 771,225 + +0.2 771,298 + +0.2 771,298 + -0.1 771,298 + +1.1 771,330 - -1.7 771,342 - +0.3 771,342 - +1.5 771,342 - -0.0 771,355 + -0.3 771,355 + -1.7 771,355 + -0.5 771,355 + +2.3 771,355 + -0.3 771,356 - -0.2 771,356 - +0.2 771,356 - -1.9 771,356 - +0.7 771,356 - -0.1 771,356 - -0.9 771,371 + -0.3 771,371 + +0.1 771,372 - -0.5 771,421 + -1.1 771,422 - -0.8 771,422 - +0.7 771,426 + +0.1 771,426 + -0.6 771,448 + +0.2 771,449 - -0.9 771,449 - -0.3 771,492 - +0.1 771,492 - +1.5 771,493 + +0.4 771,493 + +0.7 771,494 - -1.2 771,494 - +0.1 771,494 - -0.6 771,494 - +0.7 771,497 + +0.7 771,497 + -0.5 771,498 - -0.9 771,498 - +1.3 771,498 - +0.6 771,498 - -0.6 771,511 - +2.0 771,526 + +2.3 771,527 - -0.7 771,540 + -0.3 771,540 + -0.1 771,540 + -1.1 771,540 + -0.6 771,540 + -1.6 771,540 + +1.2 771,540 + -0.1 771,540 + -0.7 771,541 - -0.7 771,541 - -1.7 771,541 - -0.2 771,541 - -1.0 771,541 - +0.8 771,541 - -0.3 771,541 - -1.7 771,541 - +0.5 771,541 - +0.4 771,541 - -0.6 771,620 + +1.7 771,648 + DZA65_RS03665 0.25 -0.3 771,834 + DZA65_RS03665 0.68 +0.8 771,835 - DZA65_RS03665 0.69 -1.9 771,835 - DZA65_RS03665 0.69 +1.3 771,887 + DZA65_RS03665 0.81 +1.8 771,888 - DZA65_RS03665 0.81 -0.9 772,008 + +0.7 772,008 + +0.7 772,009 - -2.7 772,009 - -0.3 772,096 + +0.8 772,096 + -0.1 772,097 - -0.1 772,097 - +1.7 772,180 + +0.9 772,180 + -1.0 772,180 + +0.3 772,181 - -0.3 772,181 - -0.2 772,181 - +1.7 772,181 - -0.1 772,181 - -0.6 772,181 - +1.5 772,188 + +1.1 772,370 - DZA65_RS03670 0.16 -1.7 772,550 + DZA65_RS03670 0.35 -2.1 772,620 + DZA65_RS03670 0.43 -0.7 772,620 + DZA65_RS03670 0.43 -3.7 772,621 - DZA65_RS03670 0.43 +0.7 772,621 - DZA65_RS03670 0.43 -0.1 772,695 + DZA65_RS03670 0.51 -0.3 772,695 + DZA65_RS03670 0.51 -2.3 772,696 - DZA65_RS03670 0.51 -0.9 772,899 + DZA65_RS03670 0.73 -0.6 772,970 - DZA65_RS03670 0.81 -0.3 772,971 + DZA65_RS03670 0.81 -0.9 772,971 + DZA65_RS03670 0.81 -3.6 772,971 + DZA65_RS03670 0.81 -0.3 772,971 + DZA65_RS03670 0.81 -1.7 772,971 + DZA65_RS03670 0.81 -3.0 772,971 + DZA65_RS03670 0.81 -1.7 772,972 - DZA65_RS03670 0.81 +1.7 772,972 - DZA65_RS03670 0.81 +1.3 772,972 - DZA65_RS03670 0.81 -0.7 773,035 + DZA65_RS03670 0.88 -1.9 773,036 - DZA65_RS03670 0.88 -1.1 773,083 + +1.2 773,087 + -1.5 773,087 + -2.3 773,088 - -2.3 773,088 - +1.3 773,188 + -0.5 773,188 + -0.2 773,188 + -0.3 773,188 + +1.1 773,189 - -1.3 773,189 - -1.7 773,189 - -0.3 773,189 - -1.9 773,191 + -0.0 773,191 + -0.1 773,191 + +0.3 773,192 - -0.9 773,235 + -0.6 773,292 + +0.3 773,292 + -0.4 773,293 - -1.7 773,293 - +0.3 773,293 - +0.1 773,317 + +1.7 773,317 + -0.3 773,317 + +0.5 773,318 - +0.9 773,318 - -0.9 773,326 + -0.5 773,327 - -0.9 773,327 - +1.7 773,327 - +1.4 773,340 - -0.0 773,340 - +0.4 773,402 + +1.0 773,402 + +0.5 773,403 - +0.8 773,403 - -1.0 773,403 - +0.1 773,422 + +0.1 773,423 - +1.1 773,426 + -0.9 773,427 - -1.7 773,454 + +0.7 773,454 + -1.3 773,454 + +0.7 773,455 - -1.0 773,501 + +0.2 773,570 - +0.7 773,570 - +1.3 773,672 + -0.6 773,673 - -0.5 773,704 + -2.1 773,705 - -1.1 773,849 - +0.1 773,885 - -1.3 773,894 + +1.5 773,900 + -1.3 773,900 + -0.1 773,901 - -0.9 773,926 - +0.5 773,946 + +0.2 773,947 - -1.1 773,947 - +0.4 774,023 + -1.1 774,024 - +0.3 774,024 - -0.2 774,024 - -1.0 774,024 - +0.1 774,024 - +1.2 774,024 - -1.8 774,091 - DZA65_RS03675 0.10 -1.9 774,122 + DZA65_RS03675 0.12 +0.3 774,123 - DZA65_RS03675 0.12 -0.7
Or see this region's nucleotide sequence