Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03245

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03235 and DZA65_RS03240 are separated by 74 nucleotidesDZA65_RS03240 and DZA65_RS03245 overlap by 1 nucleotidesDZA65_RS03245 and DZA65_RS03250 are separated by 108 nucleotidesDZA65_RS03250 and DZA65_RS03255 are separated by 250 nucleotides DZA65_RS03235: DZA65_RS03235 - translation initiation factor IF-2, at 684,827 to 687,544 _RS03235 DZA65_RS03240: DZA65_RS03240 - 30S ribosome-binding factor RbfA, at 687,619 to 688,020 _RS03240 DZA65_RS03245: DZA65_RS03245 - tRNA pseudouridine(55) synthase TruB, at 688,020 to 688,976 _RS03245 DZA65_RS03250: DZA65_RS03250 - 30S ribosomal protein S15, at 689,085 to 689,354 _RS03250 DZA65_RS03255: DZA65_RS03255 - polyribonucleotide nucleotidyltransferase, at 689,605 to 691,725 _RS03255 Position (kb) 688 689Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 687.545 kb on + strandat 687.988 kb on - strandat 688.114 kb on + strandat 688.114 kb on + strandat 688.149 kb on - strand, within DZA65_RS03245at 688.221 kb on + strand, within DZA65_RS03245at 688.222 kb on - strand, within DZA65_RS03245at 688.222 kb on - strand, within DZA65_RS03245at 688.222 kb on - strand, within DZA65_RS03245at 688.239 kb on - strand, within DZA65_RS03245at 688.280 kb on + strand, within DZA65_RS03245at 688.298 kb on + strand, within DZA65_RS03245at 688.298 kb on + strand, within DZA65_RS03245at 688.298 kb on + strand, within DZA65_RS03245at 688.299 kb on - strand, within DZA65_RS03245at 688.299 kb on - strand, within DZA65_RS03245at 688.321 kb on + strandat 688.395 kb on + strand, within DZA65_RS03245at 688.395 kb on + strand, within DZA65_RS03245at 688.395 kb on + strand, within DZA65_RS03245at 688.396 kb on - strand, within DZA65_RS03245at 688.411 kb on - strand, within DZA65_RS03245at 688.428 kb on + strand, within DZA65_RS03245at 688.429 kb on - strand, within DZA65_RS03245at 688.434 kb on + strand, within DZA65_RS03245at 688.435 kb on - strand, within DZA65_RS03245at 688.435 kb on - strand, within DZA65_RS03245at 688.485 kb on + strand, within DZA65_RS03245at 688.485 kb on + strand, within DZA65_RS03245at 688.485 kb on + strand, within DZA65_RS03245at 688.485 kb on + strand, within DZA65_RS03245at 688.486 kb on - strand, within DZA65_RS03245at 688.486 kb on - strand, within DZA65_RS03245at 688.486 kb on - strand, within DZA65_RS03245at 688.486 kb on - strand, within DZA65_RS03245at 688.486 kb on - strand, within DZA65_RS03245at 688.493 kb on - strand, within DZA65_RS03245at 688.493 kb on - strand, within DZA65_RS03245at 688.493 kb on - strand, within DZA65_RS03245at 688.493 kb on - strand, within DZA65_RS03245at 688.493 kb on - strand, within DZA65_RS03245at 688.500 kb on - strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.554 kb on + strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.555 kb on - strand, within DZA65_RS03245at 688.569 kb on - strand, within DZA65_RS03245at 688.569 kb on - strand, within DZA65_RS03245at 688.614 kb on + strand, within DZA65_RS03245at 688.615 kb on - strand, within DZA65_RS03245at 688.615 kb on - strand, within DZA65_RS03245at 688.641 kb on + strand, within DZA65_RS03245at 688.641 kb on + strand, within DZA65_RS03245at 688.641 kb on + strand, within DZA65_RS03245at 688.641 kb on + strand, within DZA65_RS03245at 688.642 kb on - strand, within DZA65_RS03245at 688.782 kb on - strand, within DZA65_RS03245at 688.816 kb on + strand, within DZA65_RS03245at 688.816 kb on + strand, within DZA65_RS03245at 688.816 kb on + strand, within DZA65_RS03245at 688.816 kb on + strand, within DZA65_RS03245at 688.817 kb on - strand, within DZA65_RS03245at 688.817 kb on - strand, within DZA65_RS03245at 688.841 kb on + strand, within DZA65_RS03245at 688.842 kb on - strand, within DZA65_RS03245at 688.945 kb on + strandat 688.946 kb on - strandat 689.059 kb on + strandat 689.429 kb on + strandat 689.429 kb on + strandat 689.429 kb on + strandat 689.429 kb on + strandat 689.429 kb on + strandat 689.429 kb on + strandat 689.440 kb on + strandat 689.440 kb on + strandat 689.440 kb on + strandat 689.440 kb on + strandat 689.444 kb on + strandat 689.444 kb on + strandat 689.444 kb on + strandat 689.444 kb on + strandat 689.444 kb on + strandat 689.454 kb on + strandat 689.457 kb on + strandat 689.488 kb on + strandat 689.531 kb on + strandat 689.531 kb on + strandat 689.531 kb on + strandat 689.531 kb on + strandat 689.532 kb on - strandat 689.550 kb on + strandat 689.564 kb on + strandat 689.573 kb on + strandat 689.573 kb on + strandat 689.602 kb on - strandat 689.647 kb on - strandat 689.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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687,545 + -1.3
687,988 - -0.9
688,114 + -1.0
688,114 + -2.5
688,149 - DZA65_RS03245 0.13 -0.3
688,221 + DZA65_RS03245 0.21 -0.5
688,222 - DZA65_RS03245 0.21 -1.9
688,222 - DZA65_RS03245 0.21 +0.7
688,222 - DZA65_RS03245 0.21 +0.7
688,239 - DZA65_RS03245 0.23 +0.1
688,280 + DZA65_RS03245 0.27 +0.7
688,298 + DZA65_RS03245 0.29 +0.9
688,298 + DZA65_RS03245 0.29 -0.9
688,298 + DZA65_RS03245 0.29 -0.7
688,299 - DZA65_RS03245 0.29 +0.7
688,299 - DZA65_RS03245 0.29 +0.3
688,321 + -1.3
688,395 + DZA65_RS03245 0.39 -0.1
688,395 + DZA65_RS03245 0.39 -1.3
688,395 + DZA65_RS03245 0.39 +1.7
688,396 - DZA65_RS03245 0.39 +0.3
688,411 - DZA65_RS03245 0.41 +0.5
688,428 + DZA65_RS03245 0.43 +0.2
688,429 - DZA65_RS03245 0.43 -1.9
688,434 + DZA65_RS03245 0.43 +0.7
688,435 - DZA65_RS03245 0.43 -1.6
688,435 - DZA65_RS03245 0.43 +0.7
688,485 + DZA65_RS03245 0.49 +1.7
688,485 + DZA65_RS03245 0.49 +0.3
688,485 + DZA65_RS03245 0.49 +1.1
688,485 + DZA65_RS03245 0.49 +0.9
688,486 - DZA65_RS03245 0.49 +0.0
688,486 - DZA65_RS03245 0.49 -0.4
688,486 - DZA65_RS03245 0.49 +0.7
688,486 - DZA65_RS03245 0.49 -0.3
688,486 - DZA65_RS03245 0.49 -0.4
688,493 - DZA65_RS03245 0.49 +0.7
688,493 - DZA65_RS03245 0.49 -0.2
688,493 - DZA65_RS03245 0.49 -0.1
688,493 - DZA65_RS03245 0.49 -2.1
688,493 - DZA65_RS03245 0.49 -1.3
688,500 - DZA65_RS03245 0.50 -0.0
688,554 + DZA65_RS03245 0.56 -1.6
688,554 + DZA65_RS03245 0.56 -2.1
688,554 + DZA65_RS03245 0.56 -0.6
688,554 + DZA65_RS03245 0.56 +0.7
688,554 + DZA65_RS03245 0.56 -0.3
688,554 + DZA65_RS03245 0.56 -1.9
688,554 + DZA65_RS03245 0.56 +0.9
688,554 + DZA65_RS03245 0.56 +0.7
688,554 + DZA65_RS03245 0.56 -0.5
688,554 + DZA65_RS03245 0.56 -2.5
688,555 - DZA65_RS03245 0.56 +0.5
688,555 - DZA65_RS03245 0.56 +1.3
688,555 - DZA65_RS03245 0.56 +1.7
688,555 - DZA65_RS03245 0.56 -1.3
688,555 - DZA65_RS03245 0.56 +0.3
688,555 - DZA65_RS03245 0.56 -1.6
688,555 - DZA65_RS03245 0.56 +1.3
688,555 - DZA65_RS03245 0.56 -0.5
688,555 - DZA65_RS03245 0.56 -0.5
688,569 - DZA65_RS03245 0.57 +1.6
688,569 - DZA65_RS03245 0.57 +0.1
688,614 + DZA65_RS03245 0.62 +0.5
688,615 - DZA65_RS03245 0.62 +0.7
688,615 - DZA65_RS03245 0.62 -0.0
688,641 + DZA65_RS03245 0.65 -0.2
688,641 + DZA65_RS03245 0.65 +0.1
688,641 + DZA65_RS03245 0.65 -2.3
688,641 + DZA65_RS03245 0.65 +0.7
688,642 - DZA65_RS03245 0.65 -0.0
688,782 - DZA65_RS03245 0.80 -0.1
688,816 + DZA65_RS03245 0.83 +1.3
688,816 + DZA65_RS03245 0.83 -0.3
688,816 + DZA65_RS03245 0.83 +0.1
688,816 + DZA65_RS03245 0.83 -0.9
688,817 - DZA65_RS03245 0.83 -0.0
688,817 - DZA65_RS03245 0.83 -0.2
688,841 + DZA65_RS03245 0.86 -1.4
688,842 - DZA65_RS03245 0.86 +1.7
688,945 + +0.1
688,946 - +1.0
689,059 + -0.6
689,429 + +0.3
689,429 + +0.7
689,429 + -1.0
689,429 + +0.9
689,429 + -1.4
689,429 + +3.1
689,440 + -3.1
689,440 + -0.9
689,440 + -0.4
689,440 + +0.5
689,444 + -1.1
689,444 + +0.1
689,444 + -0.4
689,444 + +0.2
689,444 + +0.5
689,454 + -0.4
689,457 + -0.3
689,488 + -0.8
689,531 + -0.2
689,531 + +0.0
689,531 + -1.5
689,531 + -1.0
689,532 - +1.7
689,550 + +0.0
689,564 + +0.0
689,573 + -1.1
689,573 + +1.5
689,602 - -1.3
689,647 - +1.7
689,791 + -0.5

Or see this region's nucleotide sequence