Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03030 and DZA65_RS03035 are separated by 247 nucleotides DZA65_RS03035 and DZA65_RS03040 are separated by 224 nucleotides DZA65_RS03040 and DZA65_RS03045 are separated by 159 nucleotides
DZA65_RS03030: DZA65_RS03030 - hexose-6-phosphate:phosphate antiporter, at 645,609 to 647,000
_RS03030
DZA65_RS03035: DZA65_RS03035 - ATP-independent periplasmic protein-refolding chaperone, at 647,248 to 647,715
_RS03035
DZA65_RS03040: DZA65_RS03040 - FAD:protein FMN transferase ApbE, at 647,940 to 648,986
_RS03040
DZA65_RS03045: DZA65_RS03045 - coniferyl aldehyde dehydrogenase, at 649,146 to 650,582
_RS03045
Position (kb) 647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 647.087 kb on + strand at 647.088 kb on - strand at 647.123 kb on + strand at 647.123 kb on + strand at 647.123 kb on + strand at 647.123 kb on + strand at 647.124 kb on - strand at 647.124 kb on - strand at 647.124 kb on - strand at 647.124 kb on - strand at 647.124 kb on - strand at 647.177 kb on + strand at 647.178 kb on - strand at 647.178 kb on - strand at 647.178 kb on - strand at 647.179 kb on + strand at 647.179 kb on + strand at 647.179 kb on + strand at 647.179 kb on + strand at 647.179 kb on + strand at 647.179 kb on + strand at 647.179 kb on + strand at 647.179 kb on + strand at 647.180 kb on - strand at 647.180 kb on - strand at 647.180 kb on - strand at 647.180 kb on - strand at 647.180 kb on - strand at 647.180 kb on - strand at 647.180 kb on - strand at 647.180 kb on - strand at 647.180 kb on - strand at 647.215 kb on - strand at 647.217 kb on + strand at 647.217 kb on + strand at 647.218 kb on - strand at 647.221 kb on + strand at 647.221 kb on + strand at 647.221 kb on + strand at 647.221 kb on + strand at 647.222 kb on - strand at 647.222 kb on - strand at 647.222 kb on - strand at 647.244 kb on + strand at 647.244 kb on + strand at 647.244 kb on + strand at 647.244 kb on + strand at 647.245 kb on - strand at 647.245 kb on - strand at 647.245 kb on - strand at 647.245 kb on - strand at 647.245 kb on - strand at 647.247 kb on + strand at 647.247 kb on + strand at 647.247 kb on + strand at 647.247 kb on + strand at 647.247 kb on + strand at 647.247 kb on + strand at 647.247 kb on + strand at 647.247 kb on + strand at 647.248 kb on - strand at 647.248 kb on - strand at 647.248 kb on - strand at 647.248 kb on - strand at 647.248 kb on - strand at 647.248 kb on - strand at 647.248 kb on - strand at 647.248 kb on - strand at 647.248 kb on - strand at 647.248 kb on - strand at 647.248 kb on - strand at 647.253 kb on + strand at 647.253 kb on + strand at 647.259 kb on - strand at 647.311 kb on + strand, within DZA65_RS03035 at 647.311 kb on + strand, within DZA65_RS03035 at 647.322 kb on + strand, within DZA65_RS03035 at 647.323 kb on - strand, within DZA65_RS03035 at 647.323 kb on - strand, within DZA65_RS03035 at 647.325 kb on + strand, within DZA65_RS03035 at 647.325 kb on + strand, within DZA65_RS03035 at 647.326 kb on - strand, within DZA65_RS03035 at 647.380 kb on - strand, within DZA65_RS03035 at 647.400 kb on + strand, within DZA65_RS03035 at 647.527 kb on - strand, within DZA65_RS03035 at 647.563 kb on - strand, within DZA65_RS03035 at 647.563 kb on - strand, within DZA65_RS03035 at 647.590 kb on - strand, within DZA65_RS03035 at 647.624 kb on - strand, within DZA65_RS03035 at 647.713 kb on + strand at 647.713 kb on + strand at 647.713 kb on + strand at 647.713 kb on + strand at 647.713 kb on + strand at 647.714 kb on - strand at 647.714 kb on - strand at 647.714 kb on - strand at 647.714 kb on - strand at 647.778 kb on + strand at 647.794 kb on - strand at 647.829 kb on + strand at 647.829 kb on + strand at 647.829 kb on + strand at 647.829 kb on + strand at 647.829 kb on + strand at 647.829 kb on + strand at 647.829 kb on + strand at 647.830 kb on - strand at 647.830 kb on - strand at 647.830 kb on - strand at 647.830 kb on - strand at 647.830 kb on - strand at 647.830 kb on - strand at 647.902 kb on - strand at 647.956 kb on + strand at 647.985 kb on - strand at 647.990 kb on - strand at 647.990 kb on - strand at 648.056 kb on + strand, within DZA65_RS03040 at 648.056 kb on + strand, within DZA65_RS03040 at 648.056 kb on + strand, within DZA65_RS03040 at 648.057 kb on - strand, within DZA65_RS03040 at 648.069 kb on + strand, within DZA65_RS03040 at 648.069 kb on + strand, within DZA65_RS03040 at 648.069 kb on + strand, within DZA65_RS03040 at 648.069 kb on + strand, within DZA65_RS03040 at 648.070 kb on - strand, within DZA65_RS03040 at 648.070 kb on - strand, within DZA65_RS03040 at 648.070 kb on - strand, within DZA65_RS03040 at 648.076 kb on + strand, within DZA65_RS03040 at 648.168 kb on + strand, within DZA65_RS03040 at 648.169 kb on - strand, within DZA65_RS03040 at 648.169 kb on - strand, within DZA65_RS03040 at 648.169 kb on - strand, within DZA65_RS03040 at 648.230 kb on + strand, within DZA65_RS03040 at 648.231 kb on - strand, within DZA65_RS03040 at 648.231 kb on - strand, within DZA65_RS03040 at 648.248 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.251 kb on + strand, within DZA65_RS03040 at 648.252 kb on - strand, within DZA65_RS03040 at 648.395 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.471 kb on + strand, within DZA65_RS03040 at 648.472 kb on - strand at 648.472 kb on - strand, within DZA65_RS03040 at 648.472 kb on - strand, within DZA65_RS03040 at 648.472 kb on - strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.552 kb on + strand, within DZA65_RS03040 at 648.553 kb on - strand, within DZA65_RS03040 at 648.653 kb on + strand, within DZA65_RS03040 at 648.714 kb on + strand, within DZA65_RS03040 at 648.715 kb on - strand, within DZA65_RS03040 at 648.914 kb on + strand at 648.927 kb on - strand at 649.024 kb on + strand at 649.030 kb on + strand at 649.030 kb on + strand at 649.030 kb on + strand at 649.030 kb on + strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.031 kb on - strand at 649.034 kb on + strand at 649.034 kb on + strand at 649.034 kb on + strand at 649.035 kb on - strand at 649.053 kb on + strand at 649.053 kb on + strand at 649.054 kb on - strand at 649.054 kb on - strand at 649.073 kb on + strand at 649.073 kb on + strand at 649.073 kb on + strand at 649.073 kb on + strand at 649.074 kb on - strand at 649.088 kb on + strand at 649.124 kb on + strand at 649.124 kb on + strand at 649.124 kb on + strand at 649.125 kb on - strand at 649.134 kb on - strand at 649.167 kb on - strand at 649.211 kb on + strand at 649.211 kb on + strand at 649.211 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.256 kb on + strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.257 kb on - strand at 649.263 kb on - strand at 649.277 kb on + strand at 649.277 kb on + strand at 649.277 kb on + strand at 649.278 kb on - strand at 649.320 kb on + strand, within DZA65_RS03045 at 649.320 kb on + strand, within DZA65_RS03045 at 649.321 kb on - strand, within DZA65_RS03045 at 649.586 kb on + strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.587 kb on - strand, within DZA65_RS03045 at 649.685 kb on - strand, within DZA65_RS03045 at 649.907 kb on + strand, within DZA65_RS03045 at 649.907 kb on + strand, within DZA65_RS03045 at 649.907 kb on + strand, within DZA65_RS03045 at 649.908 kb on - strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.920 kb on + strand, within DZA65_RS03045 at 649.921 kb on - strand, within DZA65_RS03045 at 649.921 kb on - strand, within DZA65_RS03045 at 649.921 kb on - strand, within DZA65_RS03045 at 649.930 kb on + strand, within DZA65_RS03045 at 649.931 kb on - strand, within DZA65_RS03045 at 649.931 kb on - strand, within DZA65_RS03045
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 647,087 + +1.2 647,088 - -0.9 647,123 + +1.1 647,123 + -1.1 647,123 + +0.3 647,123 + -0.9 647,124 - +1.1 647,124 - +0.2 647,124 - -0.7 647,124 - -1.4 647,124 - +0.2 647,177 + -1.2 647,178 - +0.3 647,178 - +2.0 647,178 - +0.0 647,179 + -0.9 647,179 + +2.1 647,179 + +0.7 647,179 + +2.3 647,179 + -1.6 647,179 + +0.6 647,179 + +1.1 647,179 + -0.0 647,180 - -0.5 647,180 - +0.1 647,180 - +0.9 647,180 - -0.6 647,180 - -3.0 647,180 - -0.3 647,180 - -0.9 647,180 - -0.2 647,180 - -0.3 647,215 - -0.6 647,217 + -0.4 647,217 + -0.9 647,218 - +0.1 647,221 + +0.3 647,221 + -1.9 647,221 + -1.1 647,221 + +0.2 647,222 - +1.1 647,222 - -0.7 647,222 - -0.2 647,244 + +1.3 647,244 + +0.9 647,244 + +0.1 647,244 + +0.1 647,245 - +0.1 647,245 - +0.7 647,245 - -0.0 647,245 - +2.2 647,245 - +0.4 647,247 + -1.2 647,247 + +2.9 647,247 + -1.4 647,247 + -0.1 647,247 + +1.0 647,247 + +0.2 647,247 + +0.1 647,247 + +1.0 647,248 - -1.3 647,248 - -0.1 647,248 - -0.9 647,248 - +0.1 647,248 - -0.3 647,248 - -0.7 647,248 - -0.4 647,248 - -0.3 647,248 - -1.1 647,248 - +0.1 647,248 - -0.6 647,253 + +0.1 647,253 + +0.1 647,259 - -1.0 647,311 + DZA65_RS03035 0.13 -1.3 647,311 + DZA65_RS03035 0.13 -0.4 647,322 + DZA65_RS03035 0.16 +0.7 647,323 - DZA65_RS03035 0.16 -0.0 647,323 - DZA65_RS03035 0.16 +0.8 647,325 + DZA65_RS03035 0.16 -1.4 647,325 + DZA65_RS03035 0.16 -2.4 647,326 - DZA65_RS03035 0.17 +2.4 647,380 - DZA65_RS03035 0.28 +0.7 647,400 + DZA65_RS03035 0.32 -0.7 647,527 - DZA65_RS03035 0.60 +0.7 647,563 - DZA65_RS03035 0.67 +1.5 647,563 - DZA65_RS03035 0.67 -0.0 647,590 - DZA65_RS03035 0.73 -1.9 647,624 - DZA65_RS03035 0.80 -0.8 647,713 + +1.4 647,713 + +0.3 647,713 + +2.5 647,713 + -1.3 647,713 + -1.0 647,714 - +0.7 647,714 - +1.0 647,714 - +1.8 647,714 - +1.5 647,778 + +0.5 647,794 - +1.7 647,829 + -0.6 647,829 + -0.8 647,829 + +0.3 647,829 + -0.3 647,829 + -0.4 647,829 + +1.3 647,829 + -0.1 647,830 - -0.9 647,830 - -0.4 647,830 - +0.2 647,830 - +0.1 647,830 - +0.4 647,830 - +0.6 647,902 - +0.2 647,956 + -0.3 647,985 - -1.0 647,990 - +1.1 647,990 - +0.5 648,056 + DZA65_RS03040 0.11 +1.3 648,056 + DZA65_RS03040 0.11 -0.9 648,056 + DZA65_RS03040 0.11 +0.7 648,057 - DZA65_RS03040 0.11 +1.1 648,069 + DZA65_RS03040 0.12 +0.3 648,069 + DZA65_RS03040 0.12 -0.3 648,069 + DZA65_RS03040 0.12 -0.4 648,069 + DZA65_RS03040 0.12 -0.9 648,070 - DZA65_RS03040 0.12 +0.7 648,070 - DZA65_RS03040 0.12 -2.6 648,070 - DZA65_RS03040 0.12 -0.9 648,076 + DZA65_RS03040 0.13 -0.9 648,168 + DZA65_RS03040 0.22 -1.1 648,169 - DZA65_RS03040 0.22 -1.9 648,169 - DZA65_RS03040 0.22 -0.4 648,169 - DZA65_RS03040 0.22 -0.9 648,230 + DZA65_RS03040 0.28 +0.2 648,231 - DZA65_RS03040 0.28 -1.3 648,231 - DZA65_RS03040 0.28 -0.8 648,248 + DZA65_RS03040 0.29 -0.4 648,251 + DZA65_RS03040 0.30 -0.0 648,251 + DZA65_RS03040 0.30 -0.9 648,251 + DZA65_RS03040 0.30 +0.4 648,251 + DZA65_RS03040 0.30 -3.2 648,252 - DZA65_RS03040 0.30 -0.9 648,395 + DZA65_RS03040 0.43 -0.6 648,471 + DZA65_RS03040 0.51 -1.3 648,471 + DZA65_RS03040 0.51 -0.3 648,471 + DZA65_RS03040 0.51 -0.1 648,471 + DZA65_RS03040 0.51 -0.7 648,471 + DZA65_RS03040 0.51 -1.6 648,471 + DZA65_RS03040 0.51 -1.6 648,472 - +0.1 648,472 - DZA65_RS03040 0.51 -1.3 648,472 - DZA65_RS03040 0.51 +0.1 648,472 - DZA65_RS03040 0.51 -0.1 648,552 + DZA65_RS03040 0.58 +0.1 648,552 + DZA65_RS03040 0.58 -0.7 648,552 + DZA65_RS03040 0.58 -0.5 648,552 + DZA65_RS03040 0.58 -0.3 648,552 + DZA65_RS03040 0.58 -0.8 648,552 + DZA65_RS03040 0.58 -0.8 648,553 - DZA65_RS03040 0.59 +0.6 648,653 + DZA65_RS03040 0.68 -2.4 648,714 + DZA65_RS03040 0.74 -1.7 648,715 - DZA65_RS03040 0.74 -0.3 648,914 + -1.3 648,927 - -1.4 649,024 + +0.7 649,030 + +1.0 649,030 + -0.7 649,030 + +1.7 649,030 + -1.1 649,031 - -0.0 649,031 - -1.6 649,031 - +1.4 649,031 - +0.7 649,031 - -1.6 649,034 + +2.1 649,034 + -0.4 649,034 + -0.1 649,035 - +0.7 649,053 + +0.2 649,053 + -1.1 649,054 - -0.5 649,054 - +0.2 649,073 + -1.9 649,073 + -1.0 649,073 + +0.7 649,073 + +1.1 649,074 - -0.1 649,088 + -0.4 649,124 + +1.1 649,124 + +0.1 649,124 + +1.1 649,125 - +0.9 649,134 - -0.3 649,167 - -0.3 649,211 + -0.3 649,211 + +0.5 649,211 + +0.2 649,256 + +0.1 649,256 + +0.1 649,256 + -0.4 649,256 + +0.7 649,256 + -1.7 649,256 + +1.7 649,256 + +1.1 649,257 - +0.3 649,257 - +0.7 649,257 - +0.8 649,257 - +1.3 649,257 - -0.5 649,263 - +0.4 649,277 + +0.4 649,277 + +0.8 649,277 + +0.7 649,278 - -1.4 649,320 + DZA65_RS03045 0.12 -0.6 649,320 + DZA65_RS03045 0.12 +0.1 649,321 - DZA65_RS03045 0.12 -0.0 649,586 + DZA65_RS03045 0.31 -0.2 649,587 - DZA65_RS03045 0.31 -0.4 649,587 - DZA65_RS03045 0.31 +0.2 649,587 - DZA65_RS03045 0.31 +0.8 649,587 - DZA65_RS03045 0.31 -0.3 649,587 - DZA65_RS03045 0.31 -0.1 649,685 - DZA65_RS03045 0.38 +0.7 649,907 + DZA65_RS03045 0.53 -2.1 649,907 + DZA65_RS03045 0.53 -0.9 649,907 + DZA65_RS03045 0.53 -0.6 649,908 - DZA65_RS03045 0.53 -1.2 649,920 + DZA65_RS03045 0.54 +0.1 649,920 + DZA65_RS03045 0.54 -0.2 649,920 + DZA65_RS03045 0.54 +0.7 649,920 + DZA65_RS03045 0.54 +0.2 649,921 - DZA65_RS03045 0.54 -1.1 649,921 - DZA65_RS03045 0.54 -0.5 649,921 - DZA65_RS03045 0.54 +0.3 649,930 + DZA65_RS03045 0.55 +2.1 649,931 - DZA65_RS03045 0.55 -0.3 649,931 - DZA65_RS03045 0.55 +1.1
Or see this region's nucleotide sequence