Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02940 and DZA65_RS02945 are separated by 678 nucleotides DZA65_RS02945 and DZA65_RS02950 are separated by 360 nucleotides
DZA65_RS02940: DZA65_RS02940 - DedA family protein, at 627,701 to 628,378
_RS02940
DZA65_RS02945: DZA65_RS02945 - transcriptional regulator ExuR, at 629,057 to 629,836
_RS02945
DZA65_RS02950: DZA65_RS02950 - MFS transporter, at 630,197 to 631,498
_RS02950
Position (kb) 629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 628.119 kb on + strand, within DZA65_RS02940 at 628.119 kb on + strand, within DZA65_RS02940 at 628.120 kb on - strand, within DZA65_RS02940 at 628.176 kb on + strand, within DZA65_RS02940 at 628.293 kb on + strand, within DZA65_RS02940 at 628.294 kb on - strand, within DZA65_RS02940 at 628.294 kb on - strand, within DZA65_RS02940 at 628.294 kb on - strand, within DZA65_RS02940 at 628.294 kb on - strand, within DZA65_RS02940 at 628.294 kb on - strand, within DZA65_RS02940 at 628.366 kb on + strand at 628.367 kb on - strand at 628.367 kb on - strand at 628.367 kb on - strand at 628.367 kb on - strand at 628.367 kb on - strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.372 kb on + strand at 628.417 kb on - strand at 628.497 kb on - strand at 628.517 kb on + strand at 628.517 kb on + strand at 628.517 kb on + strand at 628.518 kb on - strand at 628.518 kb on - strand at 628.518 kb on - strand at 628.518 kb on - strand at 628.518 kb on - strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.555 kb on + strand at 628.555 kb on + strand at 628.555 kb on + strand at 628.555 kb on + strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.565 kb on - strand at 628.570 kb on + strand at 628.570 kb on + strand at 628.570 kb on + strand at 628.571 kb on - strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.577 kb on + strand at 628.577 kb on + strand at 628.577 kb on + strand at 628.577 kb on + strand at 628.577 kb on + strand at 628.577 kb on + strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.646 kb on + strand at 628.647 kb on - strand at 628.647 kb on - strand at 628.647 kb on - strand at 628.702 kb on - strand at 628.713 kb on - strand at 628.713 kb on - strand at 628.722 kb on - strand at 628.825 kb on - strand at 628.848 kb on - strand at 628.851 kb on + strand at 628.851 kb on + strand at 628.852 kb on - strand at 628.852 kb on - strand at 628.852 kb on - strand at 628.871 kb on + strand at 628.871 kb on + strand at 628.872 kb on - strand at 628.872 kb on - strand at 628.909 kb on - strand at 628.909 kb on - strand at 628.940 kb on + strand at 628.941 kb on - strand at 628.968 kb on + strand at 629.115 kb on + strand at 629.115 kb on + strand at 629.288 kb on - strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.391 kb on - strand, within DZA65_RS02945 at 629.522 kb on + strand, within DZA65_RS02945 at 629.808 kb on + strand at 629.849 kb on + strand at 629.849 kb on + strand at 629.849 kb on + strand at 629.850 kb on - strand at 629.854 kb on + strand at 629.855 kb on - strand at 629.892 kb on + strand at 629.893 kb on - strand at 629.893 kb on - strand at 629.919 kb on + strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 630.041 kb on + strand at 630.042 kb on - strand at 630.043 kb on + strand at 630.043 kb on + strand at 630.043 kb on + strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.061 kb on - strand at 630.061 kb on - strand at 630.070 kb on - strand at 630.070 kb on - strand at 630.072 kb on - strand at 630.072 kb on - strand at 630.072 kb on - strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.152 kb on - strand at 630.156 kb on + strand at 630.305 kb on - strand at 630.329 kb on - strand, within DZA65_RS02950 at 630.329 kb on - strand, within DZA65_RS02950 at 630.340 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.359 kb on + strand, within DZA65_RS02950 at 630.360 kb on - strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.523 kb on - strand, within DZA65_RS02950 at 630.523 kb on - strand, within DZA65_RS02950 at 630.557 kb on + strand, within DZA65_RS02950 at 630.557 kb on + strand, within DZA65_RS02950 at 630.558 kb on - strand, within DZA65_RS02950 at 630.558 kb on - strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.719 kb on - strand, within DZA65_RS02950 at 630.726 kb on + strand, within DZA65_RS02950 at 630.726 kb on + strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 628,119 + DZA65_RS02940 0.62 -1.3 628,119 + DZA65_RS02940 0.62 -1.8 628,120 - DZA65_RS02940 0.62 -0.1 628,176 + DZA65_RS02940 0.70 -1.8 628,293 + DZA65_RS02940 0.87 -1.6 628,294 - DZA65_RS02940 0.87 -1.8 628,294 - DZA65_RS02940 0.87 -1.6 628,294 - DZA65_RS02940 0.87 -2.4 628,294 - DZA65_RS02940 0.87 +0.4 628,294 - DZA65_RS02940 0.87 -0.7 628,366 + +0.7 628,367 - -0.8 628,367 - +2.7 628,367 - -0.4 628,367 - -1.2 628,367 - -0.0 628,370 + -0.5 628,370 + -1.1 628,370 + +0.2 628,370 + -2.3 628,370 + -0.5 628,370 + -0.3 628,370 + -2.8 628,370 + -0.7 628,370 + -1.8 628,370 + -2.8 628,370 + +0.9 628,370 + -0.6 628,370 + -0.1 628,371 - -2.9 628,371 - -0.3 628,371 - -0.3 628,371 - +0.3 628,371 - -0.1 628,371 - +1.0 628,371 - +1.5 628,371 - -0.4 628,371 - -0.2 628,371 - +0.0 628,371 - -1.0 628,371 - +0.3 628,372 + -2.2 628,417 - +1.7 628,497 - +0.4 628,517 + -1.1 628,517 + -0.6 628,517 + -0.4 628,518 - +0.3 628,518 - -0.8 628,518 - +1.3 628,518 - -0.5 628,518 - -0.8 628,553 + -0.3 628,553 + +0.1 628,553 + +0.5 628,553 + +0.6 628,553 + -1.1 628,553 + -0.4 628,553 + -0.5 628,553 + +0.1 628,553 + -0.6 628,553 + -1.7 628,553 + -1.3 628,553 + -1.3 628,553 + -1.3 628,553 + -1.4 628,553 + -1.3 628,553 + +0.2 628,553 + -1.2 628,554 - -0.3 628,554 - +0.9 628,554 - +0.9 628,554 - -1.8 628,554 - +0.2 628,554 - +0.6 628,554 - +1.7 628,554 - +1.1 628,554 - +0.5 628,554 - -1.2 628,554 - -0.6 628,554 - +1.2 628,554 - +0.3 628,554 - -0.8 628,554 - -0.6 628,554 - -0.1 628,554 - +0.7 628,554 - +0.5 628,554 - -1.4 628,554 - -0.3 628,554 - +4.6 628,554 - +0.7 628,554 - +0.5 628,554 - +0.5 628,554 - -1.3 628,554 - +0.2 628,554 - -1.4 628,554 - +0.4 628,554 - +0.3 628,554 - -0.3 628,554 - +0.8 628,554 - +1.3 628,554 - -2.3 628,554 - -0.4 628,554 - -0.5 628,554 - +2.3 628,555 + -1.3 628,555 + -1.6 628,555 + +0.1 628,555 + -2.3 628,556 - +0.1 628,556 - -0.0 628,556 - +0.6 628,556 - -0.5 628,556 - -1.1 628,556 - -1.6 628,556 - -0.1 628,556 - +0.2 628,556 - +0.2 628,565 - -0.1 628,570 + +0.0 628,570 + -0.1 628,570 + -0.7 628,571 - +1.0 628,575 + +0.6 628,575 + -2.1 628,575 + -1.3 628,575 + -0.5 628,575 + -1.6 628,575 + -2.1 628,575 + -0.6 628,575 + -1.0 628,575 + +0.7 628,576 - +0.3 628,576 - +1.0 628,576 - +0.3 628,576 - +0.0 628,576 - -0.4 628,576 - -0.4 628,576 - -0.7 628,576 - -0.0 628,576 - +0.5 628,576 - -1.5 628,576 - -0.8 628,576 - -1.0 628,576 - -0.6 628,576 - +0.0 628,576 - -0.6 628,576 - -0.7 628,576 - -1.1 628,576 - -0.2 628,576 - +0.6 628,576 - +0.7 628,576 - +0.2 628,576 - +0.9 628,576 - +0.4 628,577 + -0.0 628,577 + -1.6 628,577 + +0.5 628,577 + -1.8 628,577 + -0.8 628,577 + -1.6 628,578 - -0.4 628,578 - -0.7 628,578 - +1.7 628,578 - -0.7 628,578 - -1.1 628,578 - -2.5 628,578 - +0.7 628,578 - -1.4 628,578 - -0.6 628,578 - -2.2 628,578 - +1.5 628,578 - +1.0 628,646 + -0.8 628,647 - -0.1 628,647 - +0.9 628,647 - +2.4 628,702 - -1.7 628,713 - -0.3 628,713 - -2.0 628,722 - -0.5 628,825 - +1.8 628,848 - +0.2 628,851 + +1.0 628,851 + -0.3 628,852 - +1.2 628,852 - -0.3 628,852 - +1.0 628,871 + -2.1 628,871 + -1.0 628,872 - -1.6 628,872 - +1.3 628,909 - +1.3 628,909 - +1.6 628,940 + -1.5 628,941 - -1.4 628,968 + -2.0 629,115 + -0.4 629,115 + -0.8 629,288 - DZA65_RS02945 0.30 -0.5 629,390 + DZA65_RS02945 0.43 -1.3 629,390 + DZA65_RS02945 0.43 -0.1 629,390 + DZA65_RS02945 0.43 +0.1 629,391 - DZA65_RS02945 0.43 -2.1 629,522 + DZA65_RS02945 0.60 -1.8 629,808 + +0.2 629,849 + +1.7 629,849 + +0.6 629,849 + -0.1 629,850 - +0.6 629,854 + -1.8 629,855 - -0.8 629,892 + +0.7 629,893 - -0.4 629,893 - -0.8 629,919 + -0.8 629,920 - +1.4 629,920 - +0.6 629,920 - +1.0 629,920 - -0.1 629,920 - +0.7 629,920 - +0.2 629,920 - +0.2 629,920 - -0.5 629,920 - -0.2 629,920 - -0.7 629,920 - -0.6 629,922 - -1.6 629,922 - +0.7 629,922 - -0.6 629,922 - +0.7 629,931 - +1.1 629,931 - +0.7 629,931 - +0.5 629,931 - +0.3 629,931 - +1.6 629,931 - -1.3 629,931 - -1.3 629,931 - +0.4 629,931 - +0.4 630,041 + +1.2 630,042 - -1.3 630,043 + +1.2 630,043 + +0.7 630,043 + +0.2 630,044 - +1.0 630,044 - +0.2 630,044 - -1.3 630,044 - +0.7 630,044 - +0.9 630,061 - +0.9 630,061 - +0.7 630,070 - +1.3 630,070 - -1.3 630,072 - -1.0 630,072 - -0.3 630,072 - -0.8 630,112 + +0.9 630,112 + -1.0 630,112 + +0.7 630,112 + +0.7 630,112 + -1.5 630,113 - +0.9 630,113 - +0.9 630,113 - +0.1 630,113 - +0.2 630,113 - -1.1 630,113 - +0.7 630,113 - -1.4 630,113 - -2.0 630,113 - -0.3 630,113 - -0.8 630,113 - +0.7 630,152 - -0.3 630,156 + -0.5 630,305 - -0.5 630,329 - DZA65_RS02950 0.10 -1.6 630,329 - DZA65_RS02950 0.10 +0.9 630,340 + DZA65_RS02950 0.11 -0.6 630,356 + DZA65_RS02950 0.12 -0.4 630,356 + DZA65_RS02950 0.12 +1.2 630,356 + DZA65_RS02950 0.12 -2.1 630,356 + DZA65_RS02950 0.12 -1.8 630,357 - DZA65_RS02950 0.12 +0.2 630,357 - DZA65_RS02950 0.12 -0.7 630,357 - DZA65_RS02950 0.12 +0.7 630,359 + DZA65_RS02950 0.12 -0.3 630,360 - DZA65_RS02950 0.13 +1.2 630,522 + DZA65_RS02950 0.25 +1.7 630,522 + DZA65_RS02950 0.25 -1.4 630,522 + DZA65_RS02950 0.25 -0.6 630,522 + DZA65_RS02950 0.25 -1.8 630,522 + DZA65_RS02950 0.25 +0.9 630,522 + DZA65_RS02950 0.25 +1.0 630,523 - DZA65_RS02950 0.25 -0.8 630,523 - DZA65_RS02950 0.25 +0.2 630,557 + DZA65_RS02950 0.28 -1.0 630,557 + DZA65_RS02950 0.28 +0.5 630,558 - DZA65_RS02950 0.28 +0.3 630,558 - DZA65_RS02950 0.28 -0.3 630,621 + DZA65_RS02950 0.33 -2.4 630,621 + DZA65_RS02950 0.33 -0.8 630,621 + DZA65_RS02950 0.33 +0.4 630,645 + DZA65_RS02950 0.34 -0.5 630,645 + DZA65_RS02950 0.34 +0.1 630,645 + DZA65_RS02950 0.34 -1.8 630,646 - DZA65_RS02950 0.34 -0.3 630,646 - DZA65_RS02950 0.34 -0.5 630,646 - DZA65_RS02950 0.34 -0.1 630,646 - DZA65_RS02950 0.34 +0.4 630,646 - DZA65_RS02950 0.34 +0.3 630,719 - DZA65_RS02950 0.40 -0.1 630,726 + DZA65_RS02950 0.41 +1.0 630,726 + DZA65_RS02950 0.41 -0.0 630,727 - DZA65_RS02950 0.41 +0.0 630,727 - DZA65_RS02950 0.41 +0.9 630,727 - DZA65_RS02950 0.41 +1.3
Or see this region's nucleotide sequence