Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02575 and DZA65_RS02580 are separated by 268 nucleotides DZA65_RS02580 and DZA65_RS02585 overlap by 16 nucleotides DZA65_RS02585 and DZA65_RS02590 overlap by 4 nucleotides DZA65_RS02590 and DZA65_RS02595 are separated by 230 nucleotides
DZA65_RS02575: DZA65_RS02575 - DUF1868 domain-containing protein, at 553,794 to 554,624
_RS02575
DZA65_RS02580: DZA65_RS02580 - acetyltransferase, at 554,893 to 555,573
_RS02580
DZA65_RS02585: DZA65_RS02585 - hydroxyisourate hydrolase, at 555,558 to 555,890
_RS02585
DZA65_RS02590: DZA65_RS02590 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 555,887 to 556,387
_RS02590
DZA65_RS02595: DZA65_RS02595 - LysR family transcriptional regulator, at 556,618 to 557,556
_RS02595
Position (kb) 555
556 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 554.570 kb on + strand at 554.570 kb on + strand at 554.570 kb on + strand at 554.570 kb on + strand at 554.570 kb on + strand at 554.570 kb on + strand at 554.571 kb on - strand at 554.571 kb on - strand at 554.575 kb on + strand at 554.576 kb on - strand at 554.601 kb on + strand at 554.601 kb on + strand at 554.602 kb on - strand at 554.602 kb on - strand at 554.602 kb on - strand at 554.642 kb on + strand at 554.642 kb on + strand at 554.642 kb on + strand at 554.643 kb on - strand at 554.643 kb on - strand at 554.643 kb on - strand at 554.643 kb on - strand at 554.643 kb on - strand at 554.649 kb on + strand at 554.650 kb on - strand at 554.650 kb on - strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.653 kb on - strand at 554.653 kb on - strand at 554.653 kb on - strand at 554.653 kb on - strand at 554.653 kb on - strand at 554.653 kb on - strand at 554.660 kb on + strand at 554.661 kb on - strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.670 kb on - strand at 554.670 kb on - strand at 554.670 kb on - strand at 554.670 kb on - strand at 554.676 kb on + strand at 554.677 kb on - strand at 554.677 kb on - strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.681 kb on - strand at 554.681 kb on - strand at 554.681 kb on - strand at 554.681 kb on - strand at 554.681 kb on - strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.695 kb on + strand at 554.696 kb on - strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.707 kb on + strand at 554.707 kb on + strand at 554.707 kb on + strand at 554.707 kb on + strand at 554.708 kb on - strand at 554.708 kb on - strand at 554.708 kb on - strand at 554.708 kb on - strand at 554.714 kb on + strand at 554.714 kb on + strand at 554.714 kb on + strand at 554.715 kb on - strand at 554.715 kb on - strand at 554.718 kb on + strand at 554.719 kb on - strand at 554.719 kb on - strand at 554.731 kb on + strand at 554.731 kb on + strand at 554.782 kb on + strand at 554.782 kb on + strand at 554.782 kb on + strand at 554.782 kb on + strand at 554.783 kb on - strand at 554.793 kb on + strand at 554.848 kb on + strand at 554.848 kb on + strand at 554.848 kb on + strand at 554.848 kb on + strand at 554.848 kb on + strand at 554.849 kb on - strand at 554.849 kb on - strand at 554.849 kb on - strand at 554.849 kb on - strand at 554.849 kb on - strand at 554.849 kb on - strand at 554.951 kb on + strand at 554.951 kb on + strand at 554.951 kb on + strand at 554.951 kb on + strand at 554.952 kb on - strand at 554.952 kb on - strand at 554.952 kb on - strand at 555.000 kb on + strand, within DZA65_RS02580 at 555.001 kb on - strand, within DZA65_RS02580 at 555.001 kb on - strand, within DZA65_RS02580 at 555.001 kb on - strand, within DZA65_RS02580 at 555.001 kb on - strand, within DZA65_RS02580 at 555.001 kb on - strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.032 kb on - strand, within DZA65_RS02580 at 555.032 kb on - strand, within DZA65_RS02580 at 555.032 kb on - strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.160 kb on + strand, within DZA65_RS02580 at 555.161 kb on - strand, within DZA65_RS02580 at 555.176 kb on - strand, within DZA65_RS02580 at 555.520 kb on + strand at 555.520 kb on + strand at 555.520 kb on + strand at 555.520 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.614 kb on - strand, within DZA65_RS02585 at 555.614 kb on - strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.658 kb on + strand, within DZA65_RS02585 at 555.658 kb on + strand, within DZA65_RS02585 at 555.658 kb on + strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.715 kb on + strand, within DZA65_RS02585 at 555.878 kb on + strand at 555.878 kb on + strand at 555.884 kb on + strand at 555.884 kb on + strand at 555.885 kb on - strand at 556.103 kb on - strand, within DZA65_RS02590 at 556.366 kb on + strand at 556.366 kb on + strand at 556.367 kb on - strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.377 kb on - strand at 556.377 kb on - strand at 556.377 kb on - strand at 556.377 kb on - strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.409 kb on - strand at 556.409 kb on - strand at 556.409 kb on - strand at 556.409 kb on - strand at 556.419 kb on + strand at 556.419 kb on + strand at 556.419 kb on + strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.480 kb on - strand at 556.480 kb on - strand at 556.480 kb on - strand at 556.491 kb on + strand at 556.491 kb on + strand at 556.491 kb on + strand at 556.492 kb on - strand at 556.492 kb on - strand at 556.492 kb on - strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.571 kb on + strand at 556.571 kb on + strand at 556.571 kb on + strand at 556.572 kb on - strand at 556.572 kb on - strand at 556.582 kb on + strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.599 kb on + strand at 556.689 kb on + strand at 556.690 kb on - strand at 556.696 kb on + strand at 556.696 kb on + strand at 556.696 kb on + strand at 556.812 kb on + strand, within DZA65_RS02595 at 556.813 kb on - strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.835 kb on - strand, within DZA65_RS02595
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 554,570 + +0.6 554,570 + +0.2 554,570 + +1.3 554,570 + -0.7 554,570 + -0.7 554,570 + +0.1 554,571 - -0.5 554,571 - +1.2 554,575 + +0.4 554,576 - +0.2 554,601 + -0.2 554,601 + +0.9 554,602 - +0.4 554,602 - +1.8 554,602 - +1.1 554,642 + +0.6 554,642 + +0.2 554,642 + -0.4 554,643 - +0.0 554,643 - -0.1 554,643 - -0.2 554,643 - +1.8 554,643 - -1.1 554,649 + -0.8 554,650 - +0.2 554,650 - -0.1 554,652 + +0.5 554,652 + +0.3 554,652 + +1.0 554,652 + +1.3 554,652 + -0.5 554,652 + -0.6 554,652 + +0.6 554,652 + +0.4 554,652 + -0.6 554,652 + -0.9 554,653 - -0.4 554,653 - -0.8 554,653 - -1.2 554,653 - -1.6 554,653 - -0.2 554,653 - -1.1 554,660 + +0.3 554,661 - +0.0 554,669 + +1.0 554,669 + -0.2 554,669 + -0.2 554,669 + +0.4 554,669 + +0.3 554,669 + -0.0 554,669 + +0.5 554,669 + +0.5 554,669 + +0.3 554,670 - -1.6 554,670 - +0.8 554,670 - -0.5 554,670 - -1.0 554,676 + -0.6 554,677 - -0.8 554,677 - -0.6 554,680 + -2.2 554,680 + -0.7 554,680 + +0.0 554,680 + +1.0 554,680 + +0.2 554,680 + +1.1 554,680 + +0.3 554,680 + -0.2 554,680 + -2.4 554,680 + -0.0 554,681 - +1.5 554,681 - -0.2 554,681 - +0.3 554,681 - +0.3 554,681 - -1.2 554,688 + +0.2 554,688 + +0.1 554,688 + +0.0 554,688 + +1.8 554,688 + +0.4 554,688 + +0.3 554,688 + -1.2 554,688 + +7.6 554,688 + -1.5 554,689 - +1.6 554,689 - -0.8 554,689 - +1.0 554,689 - +0.5 554,689 - -1.6 554,689 - +0.2 554,689 - +1.8 554,695 + +1.3 554,696 - +0.8 554,699 + +0.2 554,699 + +0.3 554,699 + +0.0 554,699 + -0.1 554,699 + -1.6 554,699 + -0.2 554,699 + -1.2 554,699 + -0.2 554,699 + +3.6 554,699 + +0.1 554,700 - -1.6 554,700 - -1.2 554,700 - -0.1 554,700 - +1.8 554,700 - -0.2 554,700 - -0.5 554,700 - +1.3 554,707 + -0.1 554,707 + +2.0 554,707 + +0.1 554,707 + +0.9 554,708 - -0.1 554,708 - -1.8 554,708 - +0.3 554,708 - +0.6 554,714 + -1.0 554,714 + +1.0 554,714 + +0.3 554,715 - -0.2 554,715 - +0.8 554,718 + -0.7 554,719 - -0.7 554,719 - -0.2 554,731 + -1.4 554,731 + +0.3 554,782 + -0.8 554,782 + -0.1 554,782 + +0.6 554,782 + -1.0 554,783 - -0.9 554,793 + -0.2 554,848 + -1.2 554,848 + +0.0 554,848 + +0.8 554,848 + +0.8 554,848 + -0.2 554,849 - -1.4 554,849 - +0.5 554,849 - +0.3 554,849 - +0.2 554,849 - +0.8 554,849 - +0.8 554,951 + -0.6 554,951 + -0.1 554,951 + -1.0 554,951 + +1.1 554,952 - +0.3 554,952 - +1.7 554,952 - -1.4 555,000 + DZA65_RS02580 0.16 -1.0 555,001 - DZA65_RS02580 0.16 -0.2 555,001 - DZA65_RS02580 0.16 +0.4 555,001 - DZA65_RS02580 0.16 -1.6 555,001 - DZA65_RS02580 0.16 +0.4 555,001 - DZA65_RS02580 0.16 +0.3 555,031 + DZA65_RS02580 0.20 +1.1 555,031 + DZA65_RS02580 0.20 -0.9 555,031 + DZA65_RS02580 0.20 +0.5 555,031 + DZA65_RS02580 0.20 -1.8 555,031 + DZA65_RS02580 0.20 +2.0 555,031 + DZA65_RS02580 0.20 +1.0 555,032 - DZA65_RS02580 0.20 -0.8 555,032 - DZA65_RS02580 0.20 +0.4 555,032 - DZA65_RS02580 0.20 +0.8 555,037 + DZA65_RS02580 0.21 +0.6 555,037 + DZA65_RS02580 0.21 +0.2 555,037 + DZA65_RS02580 0.21 +0.8 555,037 + DZA65_RS02580 0.21 -1.8 555,037 + DZA65_RS02580 0.21 +0.4 555,037 + DZA65_RS02580 0.21 +2.0 555,037 + DZA65_RS02580 0.21 +0.1 555,037 + DZA65_RS02580 0.21 +0.4 555,037 + -0.2 555,037 + DZA65_RS02580 0.21 -1.8 555,037 + DZA65_RS02580 0.21 -1.6 555,037 + DZA65_RS02580 0.21 -0.8 555,038 - DZA65_RS02580 0.21 -0.7 555,038 - DZA65_RS02580 0.21 -1.2 555,038 - DZA65_RS02580 0.21 +1.3 555,038 - DZA65_RS02580 0.21 +0.0 555,038 - DZA65_RS02580 0.21 -0.7 555,038 - DZA65_RS02580 0.21 -0.7 555,038 - DZA65_RS02580 0.21 -0.3 555,038 - DZA65_RS02580 0.21 +1.7 555,038 - DZA65_RS02580 0.21 +0.3 555,038 - DZA65_RS02580 0.21 -0.7 555,038 - DZA65_RS02580 0.21 -0.8 555,160 + DZA65_RS02580 0.39 -0.7 555,161 - DZA65_RS02580 0.39 +0.8 555,176 - DZA65_RS02580 0.42 -0.2 555,520 + +1.3 555,520 + -0.0 555,520 + +0.1 555,520 + +0.0 555,575 + +1.8 555,575 + -0.4 555,575 + -2.0 555,575 + +1.1 555,575 + +0.2 555,575 + +0.0 555,575 + +0.8 555,575 + +1.2 555,576 - +0.1 555,576 - +1.0 555,576 - +0.2 555,576 - +1.6 555,576 - -0.6 555,576 - -0.2 555,576 - -0.6 555,576 - -0.8 555,614 - DZA65_RS02585 0.17 -1.8 555,614 - DZA65_RS02585 0.17 +1.8 555,654 + DZA65_RS02585 0.29 -0.0 555,654 + DZA65_RS02585 0.29 -0.7 555,654 + DZA65_RS02585 0.29 -0.5 555,654 + DZA65_RS02585 0.29 +0.8 555,654 + DZA65_RS02585 0.29 +0.3 555,654 + DZA65_RS02585 0.29 +0.1 555,654 + DZA65_RS02585 0.29 +1.3 555,654 + DZA65_RS02585 0.29 -0.6 555,654 + DZA65_RS02585 0.29 -0.0 555,654 + DZA65_RS02585 0.29 -0.6 555,655 - DZA65_RS02585 0.29 +0.2 555,655 - DZA65_RS02585 0.29 -1.1 555,655 - DZA65_RS02585 0.29 -0.8 555,655 - DZA65_RS02585 0.29 +0.3 555,655 - DZA65_RS02585 0.29 +0.8 555,655 - DZA65_RS02585 0.29 -0.6 555,658 + DZA65_RS02585 0.30 -1.2 555,658 + DZA65_RS02585 0.30 +1.8 555,658 + DZA65_RS02585 0.30 -1.2 555,659 - DZA65_RS02585 0.30 -0.0 555,659 - DZA65_RS02585 0.30 +0.8 555,659 - DZA65_RS02585 0.30 +0.7 555,659 - DZA65_RS02585 0.30 -0.2 555,659 - DZA65_RS02585 0.30 +0.3 555,659 - DZA65_RS02585 0.30 +0.8 555,715 + DZA65_RS02585 0.47 -0.8 555,878 + -0.8 555,878 + +1.0 555,884 + -0.8 555,884 + -0.7 555,885 - -1.2 556,103 - DZA65_RS02590 0.43 -1.4 556,366 + +0.3 556,366 + +1.0 556,367 - +0.0 556,376 + -1.3 556,376 + +1.0 556,376 + -0.2 556,376 + +0.8 556,376 + +1.1 556,376 + -0.8 556,376 + +0.4 556,376 + -0.0 556,377 - +0.4 556,377 - +0.9 556,377 - +0.2 556,377 - +0.1 556,408 + -0.2 556,408 + +0.5 556,408 + -0.3 556,408 + -0.1 556,408 + -1.6 556,409 - +1.2 556,409 - -1.9 556,409 - +0.8 556,409 - +0.2 556,419 + -1.6 556,419 + -0.5 556,419 + -0.2 556,420 - +0.2 556,420 - -0.4 556,420 - +0.1 556,420 - -1.8 556,420 - -1.8 556,480 - -1.2 556,480 - -2.0 556,480 - -0.8 556,491 + -0.6 556,491 + +0.2 556,491 + +1.1 556,492 - +0.8 556,492 - +0.2 556,492 - -1.0 556,534 + +0.0 556,534 + -0.3 556,534 + +2.0 556,534 + -1.6 556,534 + +1.2 556,534 + +0.0 556,534 + -0.7 556,534 + -1.6 556,534 + +0.4 556,534 + -0.2 556,534 + +0.3 556,535 - -0.8 556,535 - -0.6 556,535 - -0.7 556,535 - -0.6 556,535 - +0.0 556,571 + +0.3 556,571 + -1.0 556,571 + +0.3 556,572 - +1.8 556,572 - -0.3 556,582 + -0.1 556,583 - -0.1 556,583 - +0.3 556,583 - +0.8 556,599 + +0.3 556,689 + -0.1 556,690 - -0.1 556,696 + +1.8 556,696 + +0.1 556,696 + -0.8 556,812 + DZA65_RS02595 0.21 -0.6 556,813 - DZA65_RS02595 0.21 -0.7 556,814 + DZA65_RS02595 0.21 -0.2 556,814 + DZA65_RS02595 0.21 -0.0 556,814 + DZA65_RS02595 0.21 -1.2 556,814 + DZA65_RS02595 0.21 +0.6 556,814 + DZA65_RS02595 0.21 -0.2 556,814 + DZA65_RS02595 0.21 -0.7 556,815 - DZA65_RS02595 0.21 -1.2 556,815 - DZA65_RS02595 0.21 +0.5 556,815 - DZA65_RS02595 0.21 -0.2 556,815 - DZA65_RS02595 0.21 +0.0 556,815 - DZA65_RS02595 0.21 +1.2 556,835 - DZA65_RS02595 0.23 +0.3
Or see this region's nucleotide sequence