Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02050 and DZA65_RS02055 are separated by 13 nucleotides DZA65_RS02055 and DZA65_RS02060 are separated by 114 nucleotides DZA65_RS02060 and DZA65_RS02065 are separated by 283 nucleotides
DZA65_RS02050: DZA65_RS02050 - valine--tRNA ligase, at 450,869 to 453,739
_RS02050
DZA65_RS02055: DZA65_RS02055 - DNA polymerase III subunit chi, at 453,753 to 454,238
_RS02055
DZA65_RS02060: DZA65_RS02060 - leucyl aminopeptidase, at 454,353 to 455,861
_RS02060
DZA65_RS02065: DZA65_RS02065 - LPS export ABC transporter permease LptF, at 456,145 to 457,263
_RS02065
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 454.275 kb on - strand at 454.354 kb on + strand at 454.484 kb on - strand at 454.588 kb on + strand, within DZA65_RS02060 at 454.772 kb on - strand, within DZA65_RS02060 at 454.772 kb on - strand, within DZA65_RS02060 at 454.772 kb on - strand, within DZA65_RS02060 at 454.990 kb on + strand, within DZA65_RS02060 at 455.104 kb on + strand, within DZA65_RS02060 at 455.448 kb on - strand, within DZA65_RS02060 at 455.449 kb on + strand, within DZA65_RS02060 at 455.450 kb on - strand, within DZA65_RS02060 at 455.511 kb on + strand, within DZA65_RS02060 at 455.511 kb on + strand at 455.512 kb on - strand, within DZA65_RS02060 at 455.512 kb on - strand, within DZA65_RS02060 at 455.512 kb on - strand, within DZA65_RS02060 at 455.512 kb on - strand, within DZA65_RS02060 at 455.667 kb on + strand, within DZA65_RS02060 at 455.668 kb on - strand, within DZA65_RS02060 at 455.864 kb on - strand at 455.899 kb on - strand at 455.905 kb on - strand at 455.949 kb on - strand at 455.958 kb on + strand at 455.959 kb on - strand at 455.959 kb on - strand at 455.959 kb on - strand at 455.964 kb on - strand at 455.992 kb on + strand at 456.009 kb on + strand at 456.035 kb on + strand at 456.035 kb on + strand at 456.050 kb on + strand at 456.074 kb on + strand at 456.074 kb on + strand at 456.074 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 454,275 - +0.5 454,354 + -1.0 454,484 - -0.7 454,588 + DZA65_RS02060 0.16 +1.8 454,772 - DZA65_RS02060 0.28 -0.7 454,772 - DZA65_RS02060 0.28 -0.2 454,772 - DZA65_RS02060 0.28 +1.3 454,990 + DZA65_RS02060 0.42 -1.5 455,104 + DZA65_RS02060 0.50 +0.1 455,448 - DZA65_RS02060 0.73 -0.4 455,449 + DZA65_RS02060 0.73 -0.7 455,450 - DZA65_RS02060 0.73 -1.5 455,511 + DZA65_RS02060 0.77 -1.0 455,511 + -0.2 455,512 - DZA65_RS02060 0.77 -0.0 455,512 - DZA65_RS02060 0.77 +0.3 455,512 - DZA65_RS02060 0.77 -0.2 455,512 - DZA65_RS02060 0.77 -0.2 455,667 + DZA65_RS02060 0.87 -2.0 455,668 - DZA65_RS02060 0.87 -2.2 455,864 - -0.7 455,899 - -0.7 455,905 - -0.5 455,949 - -2.2 455,958 + +0.1 455,959 - -0.5 455,959 - -2.6 455,959 - +0.6 455,964 - -0.2 455,992 + -0.6 456,009 + +1.1 456,035 + +1.6 456,035 + -0.6 456,050 + -0.4 456,074 + +1.2 456,074 + -0.9 456,074 + -0.7
Or see this region's nucleotide sequence