Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01365 and DZA65_RS01370 overlap by 11 nucleotides DZA65_RS01370 and DZA65_RS01375 are separated by 191 nucleotides
DZA65_RS01365: DZA65_RS01365 - sodium/pantothenate symporter, at 300,862 to 302,313
_RS01365
DZA65_RS01370: DZA65_RS01370 - YhdT family protein, at 302,303 to 302,545
_RS01370
DZA65_RS01375: DZA65_RS01375 - acetyl-CoA carboxylase biotin carboxylase subunit, at 302,737 to 304,080
_RS01375
Position (kb) 302
303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 301.455 kb on + strand, within DZA65_RS01365 at 301.468 kb on + strand, within DZA65_RS01365 at 301.700 kb on + strand, within DZA65_RS01365 at 301.701 kb on - strand, within DZA65_RS01365 at 301.701 kb on - strand, within DZA65_RS01365 at 301.701 kb on - strand, within DZA65_RS01365 at 301.701 kb on - strand, within DZA65_RS01365 at 301.701 kb on - strand, within DZA65_RS01365 at 301.701 kb on - strand, within DZA65_RS01365 at 301.704 kb on + strand, within DZA65_RS01365 at 301.704 kb on + strand, within DZA65_RS01365 at 301.704 kb on + strand, within DZA65_RS01365 at 301.705 kb on - strand, within DZA65_RS01365 at 301.753 kb on + strand, within DZA65_RS01365 at 301.799 kb on + strand, within DZA65_RS01365 at 301.812 kb on + strand, within DZA65_RS01365 at 301.839 kb on + strand, within DZA65_RS01365 at 301.840 kb on - strand, within DZA65_RS01365 at 301.840 kb on - strand, within DZA65_RS01365 at 301.840 kb on - strand, within DZA65_RS01365 at 301.840 kb on - strand, within DZA65_RS01365 at 301.840 kb on - strand, within DZA65_RS01365 at 301.841 kb on + strand, within DZA65_RS01365 at 301.841 kb on + strand, within DZA65_RS01365 at 301.841 kb on + strand, within DZA65_RS01365 at 301.841 kb on + strand, within DZA65_RS01365 at 301.841 kb on + strand, within DZA65_RS01365 at 301.841 kb on + strand at 301.842 kb on - strand, within DZA65_RS01365 at 301.842 kb on - strand, within DZA65_RS01365 at 301.891 kb on + strand, within DZA65_RS01365 at 301.892 kb on - strand, within DZA65_RS01365 at 301.970 kb on + strand, within DZA65_RS01365 at 301.970 kb on + strand, within DZA65_RS01365 at 301.970 kb on + strand, within DZA65_RS01365 at 301.971 kb on - strand, within DZA65_RS01365 at 301.971 kb on - strand, within DZA65_RS01365 at 301.971 kb on - strand, within DZA65_RS01365 at 302.001 kb on - strand, within DZA65_RS01365 at 302.001 kb on - strand, within DZA65_RS01365 at 302.017 kb on - strand, within DZA65_RS01365 at 302.105 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.147 kb on + strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.148 kb on - strand, within DZA65_RS01365 at 302.151 kb on + strand, within DZA65_RS01365 at 302.207 kb on + strand at 302.208 kb on - strand at 302.249 kb on + strand at 302.249 kb on + strand at 302.249 kb on + strand at 302.272 kb on + strand at 302.272 kb on + strand at 302.273 kb on - strand at 302.273 kb on - strand at 302.279 kb on + strand at 302.279 kb on + strand at 302.280 kb on - strand at 302.280 kb on - strand at 302.280 kb on - strand at 302.280 kb on - strand at 302.280 kb on - strand at 302.280 kb on - strand at 302.280 kb on - strand at 302.280 kb on - strand at 302.481 kb on + strand, within DZA65_RS01370 at 302.482 kb on - strand, within DZA65_RS01370 at 302.495 kb on + strand, within DZA65_RS01370 at 302.495 kb on + strand at 302.496 kb on - strand, within DZA65_RS01370 at 302.540 kb on - strand at 302.540 kb on - strand at 302.574 kb on + strand at 302.574 kb on + strand at 302.574 kb on + strand at 302.574 kb on + strand at 302.574 kb on + strand at 302.574 kb on + strand at 302.574 kb on + strand at 302.574 kb on + strand at 302.574 kb on + strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.575 kb on - strand at 302.578 kb on + strand at 302.578 kb on + strand at 302.578 kb on + strand at 302.579 kb on - strand at 302.579 kb on - strand at 302.579 kb on - strand at 302.579 kb on - strand at 302.579 kb on - strand at 302.579 kb on - strand at 302.579 kb on - strand at 302.622 kb on + strand at 302.622 kb on + strand at 302.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 301,455 + DZA65_RS01365 0.41 +0.1 301,468 + DZA65_RS01365 0.42 -0.4 301,700 + DZA65_RS01365 0.58 -0.8 301,701 - DZA65_RS01365 0.58 -1.3 301,701 - DZA65_RS01365 0.58 -0.2 301,701 - DZA65_RS01365 0.58 +1.2 301,701 - DZA65_RS01365 0.58 -1.1 301,701 - DZA65_RS01365 0.58 -0.5 301,701 - DZA65_RS01365 0.58 +1.4 301,704 + DZA65_RS01365 0.58 -2.0 301,704 + DZA65_RS01365 0.58 +1.5 301,704 + DZA65_RS01365 0.58 -1.1 301,705 - DZA65_RS01365 0.58 -1.9 301,753 + DZA65_RS01365 0.61 +0.6 301,799 + DZA65_RS01365 0.65 -0.0 301,812 + DZA65_RS01365 0.65 +0.1 301,839 + DZA65_RS01365 0.67 -1.1 301,840 - DZA65_RS01365 0.67 +0.2 301,840 - DZA65_RS01365 0.67 -1.4 301,840 - DZA65_RS01365 0.67 -0.6 301,840 - DZA65_RS01365 0.67 -0.1 301,840 - DZA65_RS01365 0.67 +0.4 301,841 + DZA65_RS01365 0.67 +0.6 301,841 + DZA65_RS01365 0.67 -0.7 301,841 + DZA65_RS01365 0.67 -1.4 301,841 + DZA65_RS01365 0.67 +0.0 301,841 + DZA65_RS01365 0.67 +0.1 301,841 + +1.2 301,842 - DZA65_RS01365 0.67 +0.4 301,842 - DZA65_RS01365 0.67 +0.2 301,891 + DZA65_RS01365 0.71 -1.3 301,892 - DZA65_RS01365 0.71 -0.5 301,970 + DZA65_RS01365 0.76 +0.9 301,970 + DZA65_RS01365 0.76 -1.9 301,970 + DZA65_RS01365 0.76 -0.1 301,971 - DZA65_RS01365 0.76 +0.5 301,971 - DZA65_RS01365 0.76 +1.4 301,971 - DZA65_RS01365 0.76 +0.6 302,001 - DZA65_RS01365 0.78 +2.5 302,001 - DZA65_RS01365 0.78 +0.6 302,017 - DZA65_RS01365 0.80 +0.6 302,105 + DZA65_RS01365 0.86 -1.4 302,147 + DZA65_RS01365 0.88 -0.7 302,147 + DZA65_RS01365 0.88 -0.1 302,147 + DZA65_RS01365 0.88 -1.3 302,147 + DZA65_RS01365 0.88 +0.5 302,147 + DZA65_RS01365 0.88 +1.2 302,147 + DZA65_RS01365 0.88 -0.7 302,147 + DZA65_RS01365 0.88 +0.9 302,147 + DZA65_RS01365 0.88 +0.2 302,147 + DZA65_RS01365 0.88 -2.1 302,147 + DZA65_RS01365 0.88 -0.3 302,147 + DZA65_RS01365 0.88 +0.1 302,147 + DZA65_RS01365 0.88 -1.4 302,147 + DZA65_RS01365 0.88 -1.4 302,147 + DZA65_RS01365 0.88 -2.3 302,147 + DZA65_RS01365 0.88 -0.9 302,147 + DZA65_RS01365 0.88 -2.3 302,148 - DZA65_RS01365 0.89 +0.9 302,148 - DZA65_RS01365 0.89 +1.0 302,148 - DZA65_RS01365 0.89 -0.4 302,148 - DZA65_RS01365 0.89 -2.1 302,148 - DZA65_RS01365 0.89 -0.7 302,148 - DZA65_RS01365 0.89 +0.3 302,148 - DZA65_RS01365 0.89 -2.1 302,148 - DZA65_RS01365 0.89 +0.5 302,148 - DZA65_RS01365 0.89 +0.6 302,148 - +0.9 302,148 - DZA65_RS01365 0.89 -0.4 302,148 - DZA65_RS01365 0.89 -0.5 302,148 - DZA65_RS01365 0.89 +2.2 302,148 - DZA65_RS01365 0.89 +0.6 302,148 - DZA65_RS01365 0.89 -0.1 302,148 - DZA65_RS01365 0.89 -1.1 302,148 - DZA65_RS01365 0.89 +0.9 302,148 - DZA65_RS01365 0.89 -0.3 302,148 - DZA65_RS01365 0.89 +0.6 302,148 - DZA65_RS01365 0.89 +1.3 302,148 - DZA65_RS01365 0.89 -0.4 302,148 - DZA65_RS01365 0.89 -0.3 302,148 - DZA65_RS01365 0.89 -0.7 302,148 - DZA65_RS01365 0.89 +0.3 302,148 - DZA65_RS01365 0.89 -0.1 302,148 - DZA65_RS01365 0.89 +0.5 302,151 + DZA65_RS01365 0.89 -0.2 302,207 + +0.5 302,208 - +0.2 302,249 + +0.9 302,249 + -1.2 302,249 + -1.0 302,272 + +1.5 302,272 + -1.2 302,273 - -0.9 302,273 - -1.1 302,279 + -0.3 302,279 + -1.9 302,280 - -0.3 302,280 - +0.8 302,280 - +0.3 302,280 - -0.6 302,280 - +0.9 302,280 - +0.5 302,280 - -2.1 302,280 - -1.2 302,481 + DZA65_RS01370 0.73 -0.4 302,482 - DZA65_RS01370 0.74 -2.3 302,495 + DZA65_RS01370 0.79 -1.1 302,495 + -0.1 302,496 - DZA65_RS01370 0.79 -1.1 302,540 - +0.7 302,540 - +0.9 302,574 + +0.2 302,574 + +0.4 302,574 + -2.3 302,574 + -0.7 302,574 + -1.0 302,574 + -0.1 302,574 + +1.1 302,574 + -1.9 302,574 + -0.7 302,575 - +0.3 302,575 - +0.1 302,575 - -0.7 302,575 - +1.1 302,575 - -0.2 302,575 - -0.1 302,575 - +0.3 302,575 - -1.7 302,578 + -1.4 302,578 + -0.4 302,578 + -0.3 302,579 - -0.0 302,579 - -2.6 302,579 - -1.3 302,579 - -0.3 302,579 - +1.9 302,579 - -0.4 302,579 - -1.3 302,622 + -1.3 302,622 + -0.4 302,623 - -0.3
Or see this region's nucleotide sequence