Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00805 and DZA65_RS00810 overlap by 4 nucleotides DZA65_RS00810 and DZA65_RS00815 are separated by 29 nucleotides
DZA65_RS00805: DZA65_RS00805 - glycosyltransferase family 4 protein, at 180,854 to 181,972
_RS00805
DZA65_RS00810: DZA65_RS00810 - putative lipopolysaccharide heptosyltransferase III, at 181,969 to 183,054
_RS00810
DZA65_RS00815: DZA65_RS00815 - lipopolysaccharide heptosyltransferase RfaC, at 183,084 to 184,064
_RS00815
Position (kb) 181
182
183
184 Strain fitness (log2 ratio) -2
-1
0
1
2 at 182.012 kb on - strand at 182.200 kb on - strand, within DZA65_RS00810 at 182.317 kb on - strand, within DZA65_RS00810 at 182.413 kb on - strand, within DZA65_RS00810 at 182.497 kb on + strand, within DZA65_RS00810 at 182.510 kb on - strand, within DZA65_RS00810 at 182.510 kb on - strand, within DZA65_RS00810 at 182.546 kb on - strand, within DZA65_RS00810 at 182.546 kb on - strand, within DZA65_RS00810 at 182.746 kb on - strand, within DZA65_RS00810 at 182.775 kb on - strand, within DZA65_RS00810 at 182.775 kb on - strand, within DZA65_RS00810 at 183.068 kb on + strand at 183.080 kb on - strand at 183.085 kb on + strand at 183.086 kb on - strand at 183.086 kb on - strand at 183.086 kb on - strand at 183.086 kb on - strand at 183.086 kb on - strand at 183.086 kb on - strand at 183.086 kb on - strand at 183.086 kb on - strand at 183.094 kb on - strand at 183.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 182,012 - +0.8 182,200 - DZA65_RS00810 0.21 -1.7 182,317 - DZA65_RS00810 0.32 -2.1 182,413 - DZA65_RS00810 0.41 -1.4 182,497 + DZA65_RS00810 0.49 +1.3 182,510 - DZA65_RS00810 0.50 -0.7 182,510 - DZA65_RS00810 0.50 -1.1 182,546 - DZA65_RS00810 0.53 -1.9 182,546 - DZA65_RS00810 0.53 -0.9 182,746 - DZA65_RS00810 0.72 -2.2 182,775 - DZA65_RS00810 0.74 +1.5 182,775 - DZA65_RS00810 0.74 -1.9 183,068 + -0.1 183,080 - +0.6 183,085 + -1.4 183,086 - -0.1 183,086 - +0.3 183,086 - -1.2 183,086 - +0.5 183,086 - +1.8 183,086 - -0.5 183,086 - +1.7 183,086 - +1.9 183,094 - -0.1 183,094 - -0.1
Or see this region's nucleotide sequence