Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00475

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
112,899	+		DZA65_RS00470	0.46	-0.6
112,988	-		DZA65_RS00470	0.54	-0.1
112,988	-		DZA65_RS00470	0.54	+0.0
112,988	-		DZA65_RS00470	0.54	+0.4
112,988	-		DZA65_RS00470	0.54	-2.4
113,024	+		DZA65_RS00470	0.57	+1.5
113,025	-		DZA65_RS00470	0.57	-0.5
113,025	-		DZA65_RS00470	0.57	+0.1
113,025	-		DZA65_RS00470	0.57	+0.6
113,025	-		DZA65_RS00470	0.57	-0.1
113,025	-		DZA65_RS00470	0.57	+0.6
113,025	-		DZA65_RS00470	0.57	+0.9
113,025	-		DZA65_RS00470	0.57	-0.8
113,025	-		DZA65_RS00470	0.57	+1.3
113,025	-		DZA65_RS00470	0.57	+1.4
113,025	-		DZA65_RS00470	0.57	+0.5
113,025	-		DZA65_RS00470	0.57	+1.5
113,211	+		DZA65_RS00470	0.73	+1.2
113,250	+		DZA65_RS00470	0.77	-0.8
113,250	+		DZA65_RS00470	0.77	-0.2
113,252	+		DZA65_RS00470	0.77	-0.6
113,252	+		DZA65_RS00470	0.77	-0.7
113,252	+		DZA65_RS00470	0.77	-0.3
113,253	-		DZA65_RS00470	0.77	+0.3
113,253	-		DZA65_RS00470	0.77	-0.1
113,253	-		DZA65_RS00470	0.77	-2.1
113,253	-		DZA65_RS00470	0.77	-0.3
113,253	-		DZA65_RS00470	0.77	+0.4
113,253	-		DZA65_RS00470	0.77	+0.1
113,253	-		DZA65_RS00470	0.77	+1.2
113,267	+		DZA65_RS00470	0.78	+1.0
113,267	+		DZA65_RS00470	0.78	+0.1
113,364	+		DZA65_RS00470	0.87	+0.1
113,364	+		DZA65_RS00470	0.87	-0.2
113,365	-		DZA65_RS00470	0.87	-2.1
113,365	-		DZA65_RS00470	0.87	-0.2
113,387	+		DZA65_RS00470	0.89	-1.9
113,388	-		DZA65_RS00470	0.89	-1.0
113,397	+		DZA65_RS00470	0.90	+1.5
113,501	+				-0.6
113,501	+				-0.5
113,541	-				+0.4
113,541	-				+0.0
113,581	+		DZA65_RS00475	0.17	+0.1
113,581	+		DZA65_RS00475	0.17	+0.4
113,582	-		DZA65_RS00475	0.17	-1.1
113,582	-		DZA65_RS00475	0.17	-0.6
113,699	+		DZA65_RS00475	0.44	-0.5
113,699	+		DZA65_RS00475	0.44	+0.9
113,699	+		DZA65_RS00475	0.44	-0.5
113,699	+		DZA65_RS00475	0.44	+0.8
113,700	-		DZA65_RS00475	0.44	+0.9
113,700	-		DZA65_RS00475	0.44	+0.1
113,700	-		DZA65_RS00475	0.44	-0.2
113,821	+		DZA65_RS00475	0.72	-0.4
113,822	-		DZA65_RS00475	0.73	+0.9
113,822	-		DZA65_RS00475	0.73	+0.2
113,822	-		DZA65_RS00475	0.73	+1.4
113,853	+		DZA65_RS00475	0.80	+0.2
113,853	+		DZA65_RS00475	0.80	-2.1
113,853	+		DZA65_RS00475	0.80	+1.1
113,853	+		DZA65_RS00475	0.80	+0.2
113,854	-		DZA65_RS00475	0.80	-0.2
113,854	-		DZA65_RS00475	0.80	-0.5
113,854	-		DZA65_RS00475	0.80	+1.0
113,854	-		DZA65_RS00475	0.80	+2.8
113,854	-		DZA65_RS00475	0.80	+1.0
113,854	-		DZA65_RS00475	0.80	-1.8
113,859	+		DZA65_RS00475	0.81	-0.6
113,859	+		DZA65_RS00475	0.81	+0.5
113,904	-				-0.9
113,904	-				-0.3
113,904	-				+2.4
113,917	+				+1.7
113,967	-				+0.2
113,997	+				-1.4
113,998	-				-0.1
114,022	+				-0.3
114,022	+				+0.7
114,023	-				+1.4
114,023	-				-0.1
114,038	+				+1.2
114,038	+				+0.4
114,038	+				+0.4
114,039	-				-0.0
114,039	-				-0.6
114,106	+				-0.6
114,106	+				+1.0
114,107	-				+1.2
114,155	+				+1.8
114,155	+				+0.9
114,155	+				-1.1
114,155	+				-0.5
114,155	+				-1.4
114,155	+				+0.1
114,155	+				+1.8
114,155	+				-0.6
114,155	+				+1.9
114,155	+				+2.0
114,155	+				-2.2
114,155	+				-1.5
114,155	+				+2.3
114,155	+				-1.1
114,155	+				+0.4
114,155	+				+0.4
114,155	+				-1.5
114,155	+				+1.7
114,156	-				+0.1
114,156	-				-0.1
114,156	-				-0.6
114,156	-				-0.1
114,156	-				+0.7
114,156	-				+0.7
114,156	-				+0.5
114,156	-				-0.1
114,156	-				+1.4
114,156	-				-0.5
114,156	-				-0.5
114,156	-				-0.4
114,156	-				+0.5
114,156	-				+0.9
114,156	-				-0.1
114,156	-				-0.3
114,156	-				+0.5
114,232	+		DZA65_RS00480	0.13	-1.2
114,232	+		DZA65_RS00480	0.13	-0.4
114,232	+		DZA65_RS00480	0.13	-0.2
114,233	-		DZA65_RS00480	0.13	+1.8
114,233	-		DZA65_RS00480	0.13	-1.8
114,233	-		DZA65_RS00480	0.13	-0.1
114,233	-		DZA65_RS00480	0.13	-0.5
114,233	-		DZA65_RS00480	0.13	-0.1
114,255	+		DZA65_RS00480	0.14	+0.7
114,255	+		DZA65_RS00480	0.14	+0.3
114,256	-		DZA65_RS00480	0.14	-1.1
114,289	+		DZA65_RS00480	0.17	+0.2
114,290	-		DZA65_RS00480	0.17	-1.6
114,342	+		DZA65_RS00480	0.20	-1.0
114,354	+		DZA65_RS00480	0.21	+1.4
114,354	+				-0.1
114,354	+		DZA65_RS00480	0.21	+0.7
114,354	+		DZA65_RS00480	0.21	+0.9
114,355	-		DZA65_RS00480	0.21	-0.1
114,355	-		DZA65_RS00480	0.21	-1.5
114,355	-		DZA65_RS00480	0.21	+1.4
114,355	-		DZA65_RS00480	0.21	-0.5
114,355	-		DZA65_RS00480	0.21	+0.9
114,407	+		DZA65_RS00480	0.24	-0.3
114,408	-		DZA65_RS00480	0.24	-0.6
114,431	+		DZA65_RS00480	0.26	-0.1
114,431	+		DZA65_RS00480	0.26	+0.2
114,431	+		DZA65_RS00480	0.26	+1.4
114,431	+		DZA65_RS00480	0.26	-0.4
114,431	+		DZA65_RS00480	0.26	-0.4
114,431	+		DZA65_RS00480	0.26	-0.1
114,432	-		DZA65_RS00480	0.26	-0.4
114,432	-		DZA65_RS00480	0.26	-1.7
114,432	-				-0.1
114,432	-		DZA65_RS00480	0.26	+1.4
114,432	-		DZA65_RS00480	0.26	-1.6
114,484	+		DZA65_RS00480	0.29	-0.1
114,484	+		DZA65_RS00480	0.29	+1.6
114,484	+		DZA65_RS00480	0.29	+1.7
114,484	+		DZA65_RS00480	0.29	-0.9
114,485	-		DZA65_RS00480	0.29	+0.9
114,485	-		DZA65_RS00480	0.29	-0.1
114,485	-		DZA65_RS00480	0.29	+0.7
114,485	-		DZA65_RS00480	0.29	+0.6
114,489	-		DZA65_RS00480	0.30	+0.3
114,489	-		DZA65_RS00480	0.30	+1.2
114,489	-		DZA65_RS00480	0.30	-1.0
114,489	-		DZA65_RS00480	0.30	+0.7
114,601	+		DZA65_RS00480	0.37	-2.4
114,602	-		DZA65_RS00480	0.37	+0.6
114,617	-		DZA65_RS00480	0.38	-1.2
114,643	+		DZA65_RS00480	0.40	-2.1
114,649	+		DZA65_RS00480	0.40	+2.5
114,649	+		DZA65_RS00480	0.40	+0.4
114,649	+		DZA65_RS00480	0.40	-1.1
114,650	-		DZA65_RS00480	0.40	+0.6
114,650	-		DZA65_RS00480	0.40	+0.7
114,650	-		DZA65_RS00480	0.40	-0.4
114,650	-		DZA65_RS00480	0.40	-1.4
114,650	-		DZA65_RS00480	0.40	+0.4
114,650	-		DZA65_RS00480	0.40	+0.1
114,650	-		DZA65_RS00480	0.40	-1.4
114,650	-		DZA65_RS00480	0.40	+0.0
114,686	+				+0.9
114,687	-		DZA65_RS00480	0.43	-1.1
114,687	-		DZA65_RS00480	0.43	+0.4
114,687	-		DZA65_RS00480	0.43	-0.1
114,778	+		DZA65_RS00480	0.49	+0.8
114,778	+		DZA65_RS00480	0.49	-1.1
114,778	+		DZA65_RS00480	0.49	-0.2
114,778	+		DZA65_RS00480	0.49	-1.3
114,778	+		DZA65_RS00480	0.49	-0.3
114,779	-		DZA65_RS00480	0.49	+0.7
114,779	-		DZA65_RS00480	0.49	-0.1
114,779	-		DZA65_RS00480	0.49	-1.1
114,779	-		DZA65_RS00480	0.49	+1.1
114,779	-		DZA65_RS00480	0.49	-0.1
114,779	-		DZA65_RS00480	0.49	-0.6
114,779	-		DZA65_RS00480	0.49	+0.9
114,779	-		DZA65_RS00480	0.49	+0.4
114,779	-		DZA65_RS00480	0.49	-0.1
114,779	-		DZA65_RS00480	0.49	-1.9
114,816	+		DZA65_RS00480	0.51	-0.1
114,816	+		DZA65_RS00480	0.51	+0.1
114,816	+		DZA65_RS00480	0.51	-0.9
114,816	+		DZA65_RS00480	0.51	+1.5
114,822	+		DZA65_RS00480	0.52	-0.4
114,822	+		DZA65_RS00480	0.52	+0.3
114,822	+		DZA65_RS00480	0.52	+0.3
114,822	+		DZA65_RS00480	0.52	-0.4
114,822	+		DZA65_RS00480	0.52	-0.8
114,822	+		DZA65_RS00480	0.52	+1.0
114,822	+		DZA65_RS00480	0.52	-0.1
114,822	+		DZA65_RS00480	0.52	+1.7
114,822	+		DZA65_RS00480	0.52	-1.6
114,822	+		DZA65_RS00480	0.52	-0.3
114,822	+		DZA65_RS00480	0.52	+0.4
114,822	+		DZA65_RS00480	0.52	+0.4
114,822	+		DZA65_RS00480	0.52	+1.9
114,822	+		DZA65_RS00480	0.52	-0.1
114,822	+		DZA65_RS00480	0.52	+0.5
114,822	+		DZA65_RS00480	0.52	-0.2
114,822	+		DZA65_RS00480	0.52	-1.6
114,822	+		DZA65_RS00480	0.52	-0.4
114,822	+		DZA65_RS00480	0.52	-0.2
114,822	+		DZA65_RS00480	0.52	-1.1
114,823	-		DZA65_RS00480	0.52	+0.5
114,823	-		DZA65_RS00480	0.52	+0.1
114,823	-		DZA65_RS00480	0.52	+0.4
114,823	-		DZA65_RS00480	0.52	-1.9
114,823	-		DZA65_RS00480	0.52	-1.4
114,823	-				+1.4
114,823	-		DZA65_RS00480	0.52	+0.5
114,823	-		DZA65_RS00480	0.52	-0.1
114,823	-		DZA65_RS00480	0.52	+0.8
114,823	-		DZA65_RS00480	0.52	-2.8
114,823	-		DZA65_RS00480	0.52	+0.9
114,823	-		DZA65_RS00480	0.52	-1.4
114,823	-		DZA65_RS00480	0.52	+0.9
114,823	-		DZA65_RS00480	0.52	-0.9
114,823	-		DZA65_RS00480	0.52	-0.3
114,843	+		DZA65_RS00480	0.53	+0.6
114,843	+		DZA65_RS00480	0.53	-0.4
114,843	+		DZA65_RS00480	0.53	+0.6
114,844	-		DZA65_RS00480	0.53	-0.2
114,844	-		DZA65_RS00480	0.53	-0.6
114,910	-		DZA65_RS00480	0.57	-0.4
114,910	-		DZA65_RS00480	0.57	+0.0
114,912	+		DZA65_RS00480	0.57	-1.9
114,912	+		DZA65_RS00480	0.57	-1.4
114,912	+		DZA65_RS00480	0.57	+0.1
114,913	-		DZA65_RS00480	0.57	+0.4
114,913	-		DZA65_RS00480	0.57	+0.9
114,913	-		DZA65_RS00480	0.57	+0.3
114,913	-		DZA65_RS00480	0.57	+0.9
114,913	-		DZA65_RS00480	0.57	-1.1
114,913	-		DZA65_RS00480	0.57	+1.7
114,913	-		DZA65_RS00480	0.57	+0.1
114,913	-		DZA65_RS00480	0.57	-0.1
114,916	-		DZA65_RS00480	0.58	+1.9