Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00165

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00160 and DZA65_RS00165 are separated by 29 nucleotidesDZA65_RS00165 and DZA65_RS00170 overlap by 4 nucleotidesDZA65_RS00170 and DZA65_RS00175 are separated by 1 nucleotides DZA65_RS00160: DZA65_RS00160 - putative FMN-dependent luciferase-like monooxygenase, at 35,826 to 36,875 _RS00160 DZA65_RS00165: DZA65_RS00165 - ABC transporter ATP-binding protein, at 36,905 to 38,557 _RS00165 DZA65_RS00170: DZA65_RS00170 - ABC transporter permease, at 38,554 to 39,444 _RS00170 DZA65_RS00175: DZA65_RS00175 - ABC transporter permease, at 39,446 to 40,387 _RS00175 Position (kb) 36 37 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 35.939 kb on + strand, within DZA65_RS00160at 35.939 kb on + strand, within DZA65_RS00160at 35.939 kb on + strand, within DZA65_RS00160at 35.939 kb on + strand, within DZA65_RS00160at 36.241 kb on + strand, within DZA65_RS00160at 36.242 kb on - strand, within DZA65_RS00160at 36.278 kb on + strand, within DZA65_RS00160at 36.278 kb on + strand, within DZA65_RS00160at 36.585 kb on + strand, within DZA65_RS00160at 36.586 kb on - strand, within DZA65_RS00160at 36.586 kb on - strand, within DZA65_RS00160at 36.594 kb on + strand, within DZA65_RS00160at 36.594 kb on + strand, within DZA65_RS00160at 36.594 kb on + strand, within DZA65_RS00160at 36.594 kb on + strand, within DZA65_RS00160at 36.595 kb on - strand, within DZA65_RS00160at 36.595 kb on - strand, within DZA65_RS00160at 36.879 kb on + strandat 36.879 kb on + strandat 36.879 kb on + strandat 36.879 kb on + strandat 36.880 kb on - strandat 36.880 kb on - strandat 36.880 kb on - strandat 36.906 kb on + strandat 36.906 kb on + strandat 36.907 kb on - strandat 36.954 kb on + strandat 36.955 kb on - strandat 36.955 kb on - strandat 36.986 kb on + strandat 37.017 kb on + strandat 37.017 kb on + strandat 37.017 kb on + strandat 37.017 kb on + strandat 37.017 kb on + strandat 37.018 kb on - strandat 37.018 kb on - strandat 37.018 kb on - strandat 37.018 kb on - strandat 37.072 kb on + strand, within DZA65_RS00165at 37.073 kb on - strand, within DZA65_RS00165at 37.073 kb on - strand, within DZA65_RS00165at 37.080 kb on + strand, within DZA65_RS00165at 37.080 kb on + strand, within DZA65_RS00165at 37.080 kb on + strand, within DZA65_RS00165at 37.080 kb on + strand, within DZA65_RS00165at 37.080 kb on + strand, within DZA65_RS00165at 37.080 kb on + strand, within DZA65_RS00165at 37.080 kb on + strand, within DZA65_RS00165at 37.080 kb on + strand, within DZA65_RS00165at 37.081 kb on - strand, within DZA65_RS00165at 37.081 kb on - strand, within DZA65_RS00165at 37.081 kb on - strand, within DZA65_RS00165at 37.081 kb on - strand, within DZA65_RS00165at 37.081 kb on - strand, within DZA65_RS00165at 37.081 kb on - strand, within DZA65_RS00165at 37.081 kb on - strand, within DZA65_RS00165at 37.081 kb on - strand, within DZA65_RS00165at 37.081 kb on - strand, within DZA65_RS00165at 37.081 kb on - strand, within DZA65_RS00165at 37.124 kb on + strand, within DZA65_RS00165at 37.124 kb on + strand, within DZA65_RS00165at 37.124 kb on + strand, within DZA65_RS00165at 37.124 kb on + strand, within DZA65_RS00165at 37.124 kb on + strand, within DZA65_RS00165at 37.125 kb on - strand, within DZA65_RS00165at 37.125 kb on - strand, within DZA65_RS00165at 37.125 kb on - strand, within DZA65_RS00165at 37.125 kb on - strand, within DZA65_RS00165at 37.292 kb on + strand, within DZA65_RS00165at 37.292 kb on + strand, within DZA65_RS00165at 37.292 kb on + strand, within DZA65_RS00165at 37.292 kb on + strand, within DZA65_RS00165at 37.293 kb on - strand, within DZA65_RS00165at 37.329 kb on + strand, within DZA65_RS00165at 37.337 kb on - strand, within DZA65_RS00165at 37.590 kb on - strand, within DZA65_RS00165at 37.756 kb on + strand, within DZA65_RS00165at 37.776 kb on + strand, within DZA65_RS00165at 37.776 kb on + strand, within DZA65_RS00165at 37.828 kb on + strand, within DZA65_RS00165at 37.828 kb on + strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.829 kb on - strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.830 kb on + strand, within DZA65_RS00165at 37.831 kb on - strand, within DZA65_RS00165at 37.831 kb on - strand, within DZA65_RS00165at 37.831 kb on - strand, within DZA65_RS00165at 37.831 kb on - strand, within DZA65_RS00165at 37.831 kb on - strand, within DZA65_RS00165at 37.937 kb on + strand, within DZA65_RS00165at 37.938 kb on - strand, within DZA65_RS00165at 37.938 kb on - strand, within DZA65_RS00165at 38.074 kb on - strand, within DZA65_RS00165at 38.266 kb on + strand, within DZA65_RS00165at 38.266 kb on + strand, within DZA65_RS00165at 38.267 kb on - strand, within DZA65_RS00165at 38.267 kb on - strand, within DZA65_RS00165at 38.267 kb on - strand, within DZA65_RS00165at 38.405 kb on + strandat 38.484 kb on + strandat 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.661 kb on - strand, within DZA65_RS00170at 38.661 kb on - strand, within DZA65_RS00170at 38.661 kb on - strand, within DZA65_RS00170at 38.830 kb on - strand, within DZA65_RS00170at 38.868 kb on - strand, within DZA65_RS00170at 38.868 kb on - strand, within DZA65_RS00170at 39.040 kb on + strand, within DZA65_RS00170at 39.040 kb on + strandat 39.041 kb on - strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.206 kb on + strand, within DZA65_RS00170at 39.206 kb on + strand, within DZA65_RS00170at 39.207 kb on - strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.237 kb on - strand, within DZA65_RS00170at 39.237 kb on - strand, within DZA65_RS00170at 39.237 kb on - strand, within DZA65_RS00170at 39.298 kb on - strand, within DZA65_RS00170at 39.444 kb on + strandat 39.445 kb on - strandat 39.445 kb on - strandat 39.445 kb on - strandat 39.489 kb on + strandat 39.557 kb on + strand, within DZA65_RS00175at 39.557 kb on + strand, within DZA65_RS00175

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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35,939 + DZA65_RS00160 0.11 +0.5
35,939 + DZA65_RS00160 0.11 +0.3
35,939 + DZA65_RS00160 0.11 +0.3
35,939 + DZA65_RS00160 0.11 +0.2
36,241 + DZA65_RS00160 0.40 +0.4
36,242 - DZA65_RS00160 0.40 +1.0
36,278 + DZA65_RS00160 0.43 +0.2
36,278 + DZA65_RS00160 0.43 +0.0
36,585 + DZA65_RS00160 0.72 -0.3
36,586 - DZA65_RS00160 0.72 -0.1
36,586 - DZA65_RS00160 0.72 -0.3
36,594 + DZA65_RS00160 0.73 -1.9
36,594 + DZA65_RS00160 0.73 -0.1
36,594 + DZA65_RS00160 0.73 +1.4
36,594 + DZA65_RS00160 0.73 +2.8
36,595 - DZA65_RS00160 0.73 -1.2
36,595 - DZA65_RS00160 0.73 +0.5
36,879 + +0.9
36,879 + -0.7
36,879 + -0.3
36,879 + +0.2
36,880 - -0.7
36,880 - -1.6
36,880 - +1.5
36,906 + +0.1
36,906 + +0.2
36,907 - -2.1
36,954 + +0.0
36,955 - -0.5
36,955 - -0.9
36,986 + -2.1
37,017 + +1.5
37,017 + -0.7
37,017 + +0.6
37,017 + +0.3
37,017 + -0.6
37,018 - -1.6
37,018 - -0.6
37,018 - -1.9
37,018 - -1.6
37,072 + DZA65_RS00165 0.10 -0.5
37,073 - DZA65_RS00165 0.10 +0.7
37,073 - DZA65_RS00165 0.10 +1.2
37,080 + DZA65_RS00165 0.11 -0.3
37,080 + DZA65_RS00165 0.11 -0.4
37,080 + DZA65_RS00165 0.11 -0.9
37,080 + DZA65_RS00165 0.11 +0.5
37,080 + DZA65_RS00165 0.11 -1.4
37,080 + DZA65_RS00165 0.11 +0.1
37,080 + DZA65_RS00165 0.11 -0.1
37,080 + DZA65_RS00165 0.11 -1.9
37,081 - DZA65_RS00165 0.11 -0.6
37,081 - DZA65_RS00165 0.11 +0.6
37,081 - DZA65_RS00165 0.11 +0.6
37,081 - DZA65_RS00165 0.11 -1.2
37,081 - DZA65_RS00165 0.11 +0.0
37,081 - DZA65_RS00165 0.11 +0.4
37,081 - DZA65_RS00165 0.11 -0.6
37,081 - DZA65_RS00165 0.11 +0.1
37,081 - DZA65_RS00165 0.11 +0.6
37,081 - DZA65_RS00165 0.11 +0.5
37,124 + DZA65_RS00165 0.13 -0.0
37,124 + DZA65_RS00165 0.13 -0.1
37,124 + DZA65_RS00165 0.13 -1.9
37,124 + DZA65_RS00165 0.13 -0.5
37,124 + DZA65_RS00165 0.13 -0.6
37,125 - DZA65_RS00165 0.13 -1.2
37,125 - DZA65_RS00165 0.13 +0.2
37,125 - DZA65_RS00165 0.13 -0.5
37,125 - DZA65_RS00165 0.13 +0.7
37,292 + DZA65_RS00165 0.23 +0.2
37,292 + DZA65_RS00165 0.23 +0.4
37,292 + DZA65_RS00165 0.23 -0.9
37,292 + DZA65_RS00165 0.23 -1.1
37,293 - DZA65_RS00165 0.23 +0.0
37,329 + DZA65_RS00165 0.26 +2.3
37,337 - DZA65_RS00165 0.26 +0.2
37,590 - DZA65_RS00165 0.41 -0.9
37,756 + DZA65_RS00165 0.51 +0.5
37,776 + DZA65_RS00165 0.53 -1.2
37,776 + DZA65_RS00165 0.53 +0.5
37,828 + DZA65_RS00165 0.56 -1.0
37,828 + DZA65_RS00165 0.56 -2.1
37,829 - DZA65_RS00165 0.56 -0.9
37,829 - DZA65_RS00165 0.56 +1.4
37,829 - DZA65_RS00165 0.56 -0.6
37,829 - DZA65_RS00165 0.56 +0.1
37,829 - DZA65_RS00165 0.56 -1.6
37,829 - DZA65_RS00165 0.56 +0.5
37,829 - DZA65_RS00165 0.56 -1.1
37,829 - DZA65_RS00165 0.56 +1.4
37,829 - DZA65_RS00165 0.56 -1.6
37,829 - DZA65_RS00165 0.56 +0.4
37,829 - DZA65_RS00165 0.56 -0.6
37,830 + DZA65_RS00165 0.56 +0.9
37,830 + DZA65_RS00165 0.56 -0.3
37,830 + DZA65_RS00165 0.56 -0.0
37,830 + DZA65_RS00165 0.56 -0.2
37,830 + DZA65_RS00165 0.56 -2.2
37,830 + DZA65_RS00165 0.56 -0.6
37,830 + DZA65_RS00165 0.56 -1.2
37,830 + DZA65_RS00165 0.56 +2.3
37,830 + DZA65_RS00165 0.56 +0.7
37,830 + DZA65_RS00165 0.56 +0.1
37,830 + DZA65_RS00165 0.56 -0.6
37,831 - DZA65_RS00165 0.56 +1.1
37,831 - DZA65_RS00165 0.56 -0.2
37,831 - DZA65_RS00165 0.56 +0.1
37,831 - DZA65_RS00165 0.56 -2.1
37,831 - DZA65_RS00165 0.56 -0.5
37,937 + DZA65_RS00165 0.62 -0.4
37,938 - DZA65_RS00165 0.62 -1.5
37,938 - DZA65_RS00165 0.62 -0.5
38,074 - DZA65_RS00165 0.71 -0.2
38,266 + DZA65_RS00165 0.82 -0.1
38,266 + DZA65_RS00165 0.82 -0.4
38,267 - DZA65_RS00165 0.82 -0.3
38,267 - DZA65_RS00165 0.82 +0.4
38,267 - DZA65_RS00165 0.82 -0.2
38,405 + +3.3
38,484 + +0.4
38,660 + DZA65_RS00170 0.12 -0.6
38,660 + DZA65_RS00170 0.12 -1.2
38,660 + DZA65_RS00170 0.12 -2.8
38,660 + DZA65_RS00170 0.12 -0.1
38,660 + DZA65_RS00170 0.12 -0.3
38,660 + DZA65_RS00170 0.12 -0.4
38,661 - DZA65_RS00170 0.12 +0.2
38,661 - DZA65_RS00170 0.12 +0.9
38,661 - DZA65_RS00170 0.12 -1.4
38,830 - DZA65_RS00170 0.31 +0.3
38,868 - DZA65_RS00170 0.35 +0.3
38,868 - DZA65_RS00170 0.35 +0.4
39,040 + DZA65_RS00170 0.55 -0.6
39,040 + -0.6
39,041 - DZA65_RS00170 0.55 -2.4
39,170 + DZA65_RS00170 0.69 +1.4
39,170 + DZA65_RS00170 0.69 -0.1
39,170 + DZA65_RS00170 0.69 -2.1
39,170 + DZA65_RS00170 0.69 -0.5
39,171 - DZA65_RS00170 0.69 +1.3
39,171 - DZA65_RS00170 0.69 -0.2
39,171 - DZA65_RS00170 0.69 -0.6
39,171 - DZA65_RS00170 0.69 -0.5
39,206 + DZA65_RS00170 0.73 +1.9
39,206 + DZA65_RS00170 0.73 -1.5
39,207 - DZA65_RS00170 0.73 -0.7
39,221 + DZA65_RS00170 0.75 +1.1
39,221 + DZA65_RS00170 0.75 -0.1
39,221 + DZA65_RS00170 0.75 +1.0
39,221 + DZA65_RS00170 0.75 +0.4
39,221 + DZA65_RS00170 0.75 +0.4
39,221 + DZA65_RS00170 0.75 -1.2
39,221 + DZA65_RS00170 0.75 +1.3
39,221 + DZA65_RS00170 0.75 -0.5
39,222 - DZA65_RS00170 0.75 -1.8
39,222 - DZA65_RS00170 0.75 -1.1
39,222 - DZA65_RS00170 0.75 -0.4
39,222 - DZA65_RS00170 0.75 +0.1
39,222 - DZA65_RS00170 0.75 -1.1
39,222 - DZA65_RS00170 0.75 +1.9
39,236 + DZA65_RS00170 0.77 +0.1
39,236 + DZA65_RS00170 0.77 +0.8
39,236 + DZA65_RS00170 0.77 +0.5
39,236 + DZA65_RS00170 0.77 -1.6
39,236 + DZA65_RS00170 0.77 -1.6
39,236 + DZA65_RS00170 0.77 +0.0
39,237 - DZA65_RS00170 0.77 -0.2
39,237 - DZA65_RS00170 0.77 +0.9
39,237 - DZA65_RS00170 0.77 -0.1
39,298 - DZA65_RS00170 0.84 -1.3
39,444 + +0.1
39,445 - +0.3
39,445 - -0.2
39,445 - -0.1
39,489 + -0.1
39,557 + DZA65_RS00175 0.12 +0.8
39,557 + DZA65_RS00175 0.12 +1.4

Or see this region's nucleotide sequence