Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22825

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,443,231	+		DZA65_RS06970	0.25	+0.8
1,443,232	-		DZA65_RS06970	0.25	-0.4
1,443,305	+		DZA65_RS06970	0.32	+0.4
1,443,305	+		DZA65_RS06970	0.32	+0.4
1,443,306	-		DZA65_RS06970	0.32	-0.1
1,443,306	-		DZA65_RS06970	0.32	+1.4
1,443,310	+		DZA65_RS06970	0.32	+0.1
1,443,310	+		DZA65_RS06970	0.32	+0.1
1,443,311	-		DZA65_RS06970	0.32	-0.5
1,443,311	-		DZA65_RS06970	0.32	-2.0
1,443,312	+		DZA65_RS06970	0.32	-1.0
1,443,313	-		DZA65_RS06970	0.32	+1.6
1,443,324	+		DZA65_RS06970	0.33	+2.0
1,443,324	+		DZA65_RS06970	0.33	+1.1
1,443,325	-		DZA65_RS06970	0.33	+0.7
1,443,325	-		DZA65_RS06970	0.33	+0.4
1,443,325	-		DZA65_RS06970	0.33	+0.4
1,443,325	-		DZA65_RS06970	0.33	+0.0
1,443,325	-		DZA65_RS06970	0.33	-0.8
1,443,359	+		DZA65_RS06970	0.36	+0.5
1,443,364	+		DZA65_RS06970	0.36	-2.4
1,443,365	-		DZA65_RS06970	0.37	-0.6
1,443,365	-		DZA65_RS06970	0.37	-0.1
1,443,370	+		DZA65_RS06970	0.37	-0.6
1,443,408	+		DZA65_RS06970	0.40	-1.3
1,443,409	-		DZA65_RS06970	0.40	-1.8
1,443,409	-		DZA65_RS06970	0.40	-2.0
1,443,424	+		DZA65_RS06970	0.42	-1.5
1,443,424	+		DZA65_RS06970	0.42	+0.9
1,443,480	+		DZA65_RS06970	0.46	-1.2
1,443,511	+		DZA65_RS06970	0.49	-2.4
1,443,512	-		DZA65_RS06970	0.49	-1.2
1,443,540	-		DZA65_RS06970	0.51	-0.2
1,443,540	-		DZA65_RS06970	0.51	+1.6
1,443,597	+		DZA65_RS06970	0.56	-2.2
1,443,597	+		DZA65_RS06970	0.56	+0.9
1,443,597	+		DZA65_RS06970	0.56	+0.0
1,443,597	+		DZA65_RS06970	0.56	+1.2
1,443,598	-		DZA65_RS06970	0.56	-0.4
1,443,598	-		DZA65_RS06970	0.56	-0.5
1,443,598	-		DZA65_RS06970	0.56	+0.9
1,443,598	-		DZA65_RS06970	0.56	-1.4
1,443,598	-		DZA65_RS06970	0.56	+0.4
1,443,598	-		DZA65_RS06970	0.56	-0.2
1,443,749	+		DZA65_RS06970	0.69	-0.8
1,443,749	+		DZA65_RS06970	0.69	-1.2
1,443,749	+		DZA65_RS06970	0.69	+0.8
1,443,750	-		DZA65_RS06970	0.69	-1.1
1,444,044	+				+0.8
1,444,045	-				+0.2
1,444,045	-				+0.8
1,444,047	+				-0.4
1,444,047	+				-1.8
1,444,048	-				-0.1
1,444,048	-				+0.9
1,444,048	-				-0.4
1,444,048	-				+0.1
1,444,048	-				+0.1
1,444,048	-				+0.2
1,444,049	+				+1.0
1,444,049	+				-3.2
1,444,049	+				-1.2
1,444,049	+				+0.5
1,444,049	+				+0.4
1,444,049	+				-0.8
1,444,049	+				+0.4
1,444,049	+				+0.9
1,444,050	-				-2.0
1,444,050	-				-1.5
1,444,050	-				-0.5
1,444,050	-				+0.2
1,444,050	-				+1.9
1,444,050	-				-0.9
1,444,050	-				-1.2
1,444,050	-				+0.6
1,444,050	-				-1.0
1,444,050	-				+0.2
1,444,050	-				-1.2
1,444,050	-				+0.6
1,444,050	-				+0.4
1,444,050	-				+0.4
1,444,050	-				-0.4
1,444,050	-				-1.5
1,444,258	+		DZA65_RS22825	0.59	-0.3
1,444,258	+		DZA65_RS22825	0.59	-0.3
1,444,259	-		DZA65_RS22825	0.59	-0.6
1,444,259	-		DZA65_RS22825	0.59	+1.4
1,444,259	-		DZA65_RS22825	0.59	-0.6
1,444,292	-		DZA65_RS22825	0.70	+0.9
1,444,292	-		DZA65_RS22825	0.70	-0.9
1,444,292	-		DZA65_RS22825	0.70	+0.1
1,444,331	+		DZA65_RS22825	0.84	+0.4
1,444,332	-		DZA65_RS22825	0.84	-1.6
1,444,332	-		DZA65_RS22825	0.84	-1.8
1,444,336	+		DZA65_RS22825	0.85	-2.2
1,444,336	+		DZA65_RS22825	0.85	-0.2
1,444,336	+		DZA65_RS22825	0.85	+0.3
1,444,336	+		DZA65_RS22825	0.85	-1.1
1,444,336	+		DZA65_RS22825	0.85	+1.5
1,444,337	-		DZA65_RS22825	0.86	-0.5
1,444,337	-		DZA65_RS22825	0.86	-2.6
1,444,337	-		DZA65_RS22825	0.86	+0.1
1,444,370	+				+0.8
1,444,370	+				-2.2
1,444,370	+				-0.5
1,444,371	-				+0.2
1,444,371	-				+0.2
1,444,407	+				-0.1
1,444,408	-				+0.0
1,444,512	+				+0.7
1,444,547	-				+1.4
1,444,547	-				-0.3
1,444,547	-				-0.5
1,444,584	+				+0.9
1,444,585	-				-0.3
1,444,593	-				+0.8
1,444,627	+				-0.1
1,444,706	+		DZA65_RS06975	0.14	-1.2
1,444,707	-		DZA65_RS06975	0.14	-0.4
1,444,716	-		DZA65_RS06975	0.15	+1.8
1,444,763	+		DZA65_RS06975	0.19	-0.4
1,444,764	-		DZA65_RS06975	0.20	+0.7
1,444,790	+		DZA65_RS06975	0.22	+0.5
1,444,791	-		DZA65_RS06975	0.22	+0.9
1,445,021	+		DZA65_RS06975	0.43	-0.9
1,445,021	+		DZA65_RS06975	0.43	+0.4
1,445,022	-		DZA65_RS06975	0.43	-1.4
1,445,022	-		DZA65_RS06975	0.43	+0.1
1,445,022	-		DZA65_RS06975	0.43	+1.1
1,445,022	-		DZA65_RS06975	0.43	+0.8
1,445,024	+		DZA65_RS06975	0.44	+0.6
1,445,087	+		DZA65_RS06975	0.49	+0.3
1,445,087	+		DZA65_RS06975	0.49	-0.6
1,445,087	+		DZA65_RS06975	0.49	+0.6
1,445,087	+		DZA65_RS06975	0.49	+1.0
1,445,087	+		DZA65_RS06975	0.49	-0.6
1,445,087	+		DZA65_RS06975	0.49	-0.3
1,445,088	-		DZA65_RS06975	0.49	-0.6
1,445,088	-		DZA65_RS06975	0.49	+0.1
1,445,088	-		DZA65_RS06975	0.49	+0.8
1,445,088	-		DZA65_RS06975	0.49	+0.4
1,445,174	+		DZA65_RS06975	0.57	+1.7
1,445,175	-		DZA65_RS06975	0.58	+0.2
1,445,175	-		DZA65_RS06975	0.58	-1.3
1,445,237	+		DZA65_RS06975	0.63	-0.5
1,445,237	+		DZA65_RS06975	0.63	-1.1
1,445,237	+		DZA65_RS06975	0.63	-0.6
1,445,238	-		DZA65_RS06975	0.63	+0.1
1,445,238	-		DZA65_RS06975	0.63	+0.7
1,445,243	-		DZA65_RS06975	0.64	-1.0
1,445,308	+		DZA65_RS06975	0.70	+2.4
1,445,308	+		DZA65_RS06975	0.70	-2.4
1,445,308	+		DZA65_RS06975	0.70	+1.8
1,445,308	+		DZA65_RS06975	0.70	-1.0
1,445,309	-		DZA65_RS06975	0.70	-2.1
1,445,309	-				+0.9
1,445,309	-		DZA65_RS06975	0.70	+0.6
1,445,309	-				+0.4
1,445,309	-		DZA65_RS06975	0.70	+0.1