Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22530

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,872,018	+		DZA65_RS22525	0.33	-1.9
4,872,018	+		DZA65_RS22525	0.33	-0.1
4,872,018	+		DZA65_RS22525	0.33	+0.2
4,872,018	+		DZA65_RS22525	0.33	+1.3
4,872,018	+		DZA65_RS22525	0.33	-0.3
4,872,019	-		DZA65_RS22525	0.34	-1.1
4,872,019	-		DZA65_RS22525	0.34	+1.1
4,872,019	-		DZA65_RS22525	0.34	-0.1
4,872,019	-		DZA65_RS22525	0.34	-1.4
4,872,104	+		DZA65_RS22525	0.39	-0.8
4,872,104	+		DZA65_RS22525	0.39	-0.3
4,872,104	+		DZA65_RS22525	0.39	-1.4
4,872,104	+		DZA65_RS22525	0.39	+0.7
4,872,104	+		DZA65_RS22525	0.39	-0.7
4,872,104	+		DZA65_RS22525	0.39	-0.7
4,872,104	+		DZA65_RS22525	0.39	-0.9
4,872,104	+		DZA65_RS22525	0.39	-0.5
4,872,105	-		DZA65_RS22525	0.40	-1.6
4,872,105	-		DZA65_RS22525	0.40	-2.3
4,872,105	-		DZA65_RS22525	0.40	-0.7
4,872,105	-		DZA65_RS22525	0.40	-1.3
4,872,105	-		DZA65_RS22525	0.40	-0.3
4,872,105	-		DZA65_RS22525	0.40	-1.3
4,872,105	-		DZA65_RS22525	0.40	-1.1
4,872,105	-		DZA65_RS22525	0.40	-0.9
4,872,105	-		DZA65_RS22525	0.40	-0.2
4,872,105	-		DZA65_RS22525	0.40	+0.1
4,872,151	+		DZA65_RS22525	0.43	-0.7
4,872,151	+		DZA65_RS22525	0.43	+0.8
4,872,151	+		DZA65_RS22525	0.43	-1.9
4,872,151	+		DZA65_RS22525	0.43	-1.0
4,872,151	+		DZA65_RS22525	0.43	+0.4
4,872,152	-		DZA65_RS22525	0.43	+0.1
4,872,152	-		DZA65_RS22525	0.43	-0.1
4,872,168	+		DZA65_RS22525	0.44	+1.3
4,872,168	+		DZA65_RS22525	0.44	+0.3
4,872,168	+		DZA65_RS22525	0.44	-0.2
4,872,168	+		DZA65_RS22525	0.44	-0.4
4,872,168	+		DZA65_RS22525	0.44	-0.4
4,872,168	+		DZA65_RS22525	0.44	-0.0
4,872,168	+		DZA65_RS22525	0.44	-1.4
4,872,169	-		DZA65_RS22525	0.44	-0.4
4,872,169	-		DZA65_RS22525	0.44	-2.6
4,872,217	-		DZA65_RS22525	0.47	+0.1
4,872,257	+		DZA65_RS22525	0.50	-1.3
4,872,257	+		DZA65_RS22525	0.50	+2.7
4,872,258	-		DZA65_RS22525	0.50	+0.5
4,872,360	+		DZA65_RS22525	0.57	-0.1
4,872,360	+		DZA65_RS22525	0.57	+1.1
4,872,368	+		DZA65_RS22525	0.58	+0.1
4,872,389	+		DZA65_RS22525	0.59	-0.3
4,872,389	+		DZA65_RS22525	0.59	-0.4
4,872,390	-		DZA65_RS22525	0.59	-0.5
4,872,390	-		DZA65_RS22525	0.59	+1.1
4,872,390	-		DZA65_RS22525	0.59	+0.3
4,872,390	-		DZA65_RS22525	0.59	-0.4
4,872,404	-		DZA65_RS22525	0.60	+1.2
4,872,404	-		DZA65_RS22525	0.60	+1.6
4,872,465	+		DZA65_RS22525	0.65	-0.3
4,872,503	+		DZA65_RS22525	0.67	+0.7
4,872,503	+		DZA65_RS22525	0.67	+0.6
4,872,504	-		DZA65_RS22525	0.67	-0.3
4,872,517	+				+0.7
4,872,518	-		DZA65_RS22525	0.68	+0.7
4,872,518	-		DZA65_RS22525	0.68	-1.4
4,872,594	-		DZA65_RS22525	0.74	+0.9
4,872,612	-		DZA65_RS22525	0.75	+0.7
4,872,612	-		DZA65_RS22525	0.75	-0.1
4,872,612	-		DZA65_RS22525	0.75	+0.2
4,872,631	+		DZA65_RS22525	0.76	+1.2
4,872,631	+		DZA65_RS22525	0.76	+0.5
4,872,632	-		DZA65_RS22525	0.76	+0.5
4,872,632	-		DZA65_RS22525	0.76	-0.0
4,872,632	-		DZA65_RS22525	0.76	-0.4
4,872,636	+		DZA65_RS22525	0.76	+0.2
4,872,636	+		DZA65_RS22525	0.76	-0.2
4,872,636	+		DZA65_RS22525	0.76	-0.3
4,872,637	-		DZA65_RS22525	0.77	-0.8
4,872,654	-		DZA65_RS22525	0.78	-1.0
4,872,670	+		DZA65_RS22525	0.79	+0.5
4,872,670	+		DZA65_RS22525	0.79	+0.1
4,872,670	+		DZA65_RS22525	0.79	+0.3
4,872,671	-		DZA65_RS22525	0.79	+0.1
4,872,671	-		DZA65_RS22525	0.79	-0.6
4,872,730	+		DZA65_RS22525	0.83	+1.3
4,872,730	+		DZA65_RS22525	0.83	-0.7
4,872,730	+		DZA65_RS22525	0.83	-0.9
4,872,730	+		DZA65_RS22525	0.83	-2.0
4,872,731	-		DZA65_RS22525	0.83	+0.4
4,872,731	-		DZA65_RS22525	0.83	-1.4
4,872,731	-		DZA65_RS22525	0.83	-0.2
4,872,731	-		DZA65_RS22525	0.83	-0.4
4,872,731	-		DZA65_RS22525	0.83	-2.6
4,872,731	-		DZA65_RS22525	0.83	+1.6
4,872,734	-		DZA65_RS22525	0.83	+1.1
4,872,860	+				-0.1
4,872,879	+				+0.1
4,872,879	+				+0.2
4,872,879	+				+0.1
4,872,879	+				-0.8
4,872,879	+				+1.0
4,872,879	+				+1.1
4,872,880	-				+0.2
4,872,880	-				-1.1
4,872,912	+				-0.5
4,872,913	-				+0.2
4,872,913	-				-0.4
4,872,913	-				+0.3
4,872,913	-				-0.5
4,872,913	-				+1.1
4,872,913	-				+0.9
4,872,930	-				+0.6
4,872,939	+				+1.7
4,872,940	-				+0.1
4,872,940	-				+1.1
4,872,940	-				+0.7
4,872,940	-				-1.3
4,872,940	-				-0.9
4,873,017	+				-1.6
4,873,017	+				-1.6
4,873,018	-				+0.7
4,873,018	-				-1.7
4,873,018	-				-0.9
4,873,018	-				-1.1
4,873,018	-				-0.3
4,873,018	-				-0.0
4,873,018	-				-0.3
4,873,053	+				-1.3
4,873,053	+				-0.7
4,873,054	-				+0.2
4,873,080	+				-0.5
4,873,080	+				-0.7
4,873,081	-				-0.9
4,873,081	-				-0.9
4,873,130	-		DZA65_RS22530	0.12	-0.0
4,873,194	+		DZA65_RS22530	0.17	+0.9
4,873,194	+		DZA65_RS22530	0.17	-0.0
4,873,194	+		DZA65_RS22530	0.17	-0.5
4,873,194	+		DZA65_RS22530	0.17	+1.1
4,873,194	+		DZA65_RS22530	0.17	-1.9
4,873,194	+		DZA65_RS22530	0.17	+0.7
4,873,195	-		DZA65_RS22530	0.17	-1.9
4,873,195	-		DZA65_RS22530	0.17	+0.4
4,873,195	-		DZA65_RS22530	0.17	-1.6
4,873,195	-		DZA65_RS22530	0.17	+1.4
4,873,195	-		DZA65_RS22530	0.17	+0.0
4,873,195	-		DZA65_RS22530	0.17	-0.6
4,873,205	-		DZA65_RS22530	0.18	-0.3
4,873,205	-				-0.3
4,873,255	+				+0.1
4,873,255	+		DZA65_RS22530	0.22	-2.2
4,873,256	-		DZA65_RS22530	0.22	+0.2
4,873,295	+		DZA65_RS22530	0.25	-1.1
4,873,295	+		DZA65_RS22530	0.25	+1.9
4,873,296	-		DZA65_RS22530	0.25	-1.6
4,873,345	+		DZA65_RS22530	0.29	+1.0
4,873,354	-		DZA65_RS22530	0.30	+0.7
4,873,354	-		DZA65_RS22530	0.30	+1.5
4,873,354	-		DZA65_RS22530	0.30	+0.7
4,873,394	+		DZA65_RS22530	0.33	+0.3
4,873,395	-		DZA65_RS22530	0.33	+1.0
4,873,395	-		DZA65_RS22530	0.33	+0.3
4,873,410	-		DZA65_RS22530	0.34	+0.5
4,873,452	+		DZA65_RS22530	0.37	+1.1
4,873,452	+		DZA65_RS22530	0.37	+0.7
4,873,452	+		DZA65_RS22530	0.37	-0.8
4,873,453	-		DZA65_RS22530	0.37	-0.1
4,873,453	-		DZA65_RS22530	0.37	-0.3
4,873,453	-		DZA65_RS22530	0.37	-1.1
4,873,490	+		DZA65_RS22530	0.40	+1.3
4,873,490	+		DZA65_RS22530	0.40	+0.7
4,873,490	+		DZA65_RS22530	0.40	+0.9
4,873,490	+		DZA65_RS22530	0.40	+0.5
4,873,563	+		DZA65_RS22530	0.45	-0.3
4,873,564	-		DZA65_RS22530	0.46	-1.2
4,873,564	-		DZA65_RS22530	0.46	-2.1
4,873,564	-		DZA65_RS22530	0.46	+0.2
4,873,598	+		DZA65_RS22530	0.48	-1.9
4,873,599	-		DZA65_RS22530	0.48	-0.1
4,873,599	-		DZA65_RS22530	0.48	-0.4
4,873,600	+		DZA65_RS22530	0.48	-1.3
4,873,600	+		DZA65_RS22530	0.48	+1.2
4,873,600	+		DZA65_RS22530	0.48	-0.3
4,873,600	+		DZA65_RS22530	0.48	+0.5
4,873,600	+		DZA65_RS22530	0.48	+0.8
4,873,600	+		DZA65_RS22530	0.48	+1.3
4,873,600	+		DZA65_RS22530	0.48	-0.7
4,873,601	-		DZA65_RS22530	0.48	-0.3
4,873,601	-		DZA65_RS22530	0.48	-0.7
4,873,601	-		DZA65_RS22530	0.48	-1.0
4,873,601	-		DZA65_RS22530	0.48	-0.6
4,873,601	-		DZA65_RS22530	0.48	+0.4
4,873,601	-		DZA65_RS22530	0.48	+0.1
4,873,601	-		DZA65_RS22530	0.48	-0.6
4,873,601	-		DZA65_RS22530	0.48	-2.4
4,873,601	-		DZA65_RS22530	0.48	+1.3
4,873,601	-		DZA65_RS22530	0.48	+0.4
4,873,601	-		DZA65_RS22530	0.48	+0.5
4,873,636	+		DZA65_RS22530	0.51	+0.1
4,873,636	+		DZA65_RS22530	0.51	+0.2
4,873,636	+		DZA65_RS22530	0.51	+0.4
4,873,636	+		DZA65_RS22530	0.51	+0.7
4,873,636	+		DZA65_RS22530	0.51	-0.2
4,873,636	+		DZA65_RS22530	0.51	-0.5
4,873,637	-		DZA65_RS22530	0.51	-1.0
4,873,637	-		DZA65_RS22530	0.51	-1.3
4,873,637	-		DZA65_RS22530	0.51	+1.2
4,873,637	-		DZA65_RS22530	0.51	+0.3
4,873,637	-		DZA65_RS22530	0.51	-0.7
4,873,637	-		DZA65_RS22530	0.51	-2.1
4,873,661	+		DZA65_RS22530	0.53	-0.1
4,873,661	+		DZA65_RS22530	0.53	-1.7
4,873,661	+		DZA65_RS22530	0.53	-1.3
4,873,662	-		DZA65_RS22530	0.53	-0.0
4,873,662	-		DZA65_RS22530	0.53	-1.3
4,873,662	-		DZA65_RS22530	0.53	+1.5
4,873,662	-		DZA65_RS22530	0.53	-1.6
4,873,662	-		DZA65_RS22530	0.53	+0.1
4,873,738	+		DZA65_RS22530	0.59	+1.2
4,873,739	-		DZA65_RS22530	0.59	+1.2
4,873,739	-		DZA65_RS22530	0.59	-2.1
4,873,772	+		DZA65_RS22530	0.61	+0.7
4,873,772	+		DZA65_RS22530	0.61	-0.3
4,873,772	+		DZA65_RS22530	0.61	+1.7
4,873,772	+		DZA65_RS22530	0.61	-0.8
4,873,773	-		DZA65_RS22530	0.61	+0.3
4,873,776	+		DZA65_RS22530	0.62	+0.5
4,873,776	+		DZA65_RS22530	0.62	+1.7
4,873,776	+		DZA65_RS22530	0.62	-0.9
4,873,776	+		DZA65_RS22530	0.62	-1.1
4,873,777	-		DZA65_RS22530	0.62	-0.6
4,873,777	-		DZA65_RS22530	0.62	+0.7
4,873,777	-		DZA65_RS22530	0.62	-0.1
4,873,777	-		DZA65_RS22530	0.62	+0.7
4,873,777	-		DZA65_RS22530	0.62	-1.0
4,873,886	+		DZA65_RS22530	0.70	+0.2
4,873,935	-		DZA65_RS22530	0.74	+1.2
4,873,935	-		DZA65_RS22530	0.74	-1.3
4,873,935	-		DZA65_RS22530	0.74	-2.4
4,873,957	-		DZA65_RS22530	0.75	+0.3
4,873,972	+		DZA65_RS22530	0.77	-0.0
4,873,972	+		DZA65_RS22530	0.77	+0.2
4,873,972	+		DZA65_RS22530	0.77	+0.1
4,873,972	+		DZA65_RS22530	0.77	-2.4
4,873,972	+		DZA65_RS22530	0.77	-0.3
4,873,972	+		DZA65_RS22530	0.77	-2.4
4,873,973	-		DZA65_RS22530	0.77	+1.1
4,873,973	-		DZA65_RS22530	0.77	-0.7
4,873,973	-		DZA65_RS22530	0.77	+1.9
4,873,973	-		DZA65_RS22530	0.77	+1.0
4,874,041	+		DZA65_RS22530	0.82	-0.0
4,874,042	-		DZA65_RS22530	0.82	-2.3
4,874,042	-		DZA65_RS22530	0.82	-1.1
4,874,042	-		DZA65_RS22530	0.82	+0.3
4,874,042	-		DZA65_RS22530	0.82	-0.3
4,874,042	-		DZA65_RS22530	0.82	+0.4
4,874,042	-		DZA65_RS22530	0.82	+0.3
4,874,043	+		DZA65_RS22530	0.82	+0.4
4,874,054	+		DZA65_RS22530	0.83	-0.9
4,874,055	-		DZA65_RS22530	0.83	+1.4
4,874,055	-		DZA65_RS22530	0.83	-2.1
4,874,161	-				+0.9
4,874,172	-				-0.1
4,874,216	+				+1.3
4,874,217	-				+0.2
4,874,234	+				-0.5
4,874,249	+				-2.6
4,874,249	+				+0.6
4,874,249	+				+0.0
4,874,249	+				-1.0
4,874,249	+				-1.9
4,874,249	+				-0.7
4,874,249	+				-0.5
4,874,249	+				+1.7
4,874,249	+				-0.4
4,874,250	-				-0.3
4,874,250	-				-1.3
4,874,250	-				-0.9
4,874,250	-				+0.3
4,874,250	-				+0.5
4,874,250	-				-0.9
4,874,253	-				-0.7
4,874,280	-				+1.7
4,874,305	+		DZA65_RS22535	0.10	+0.6
4,874,305	+				+0.1
4,874,305	+		DZA65_RS22535	0.10	-0.0
4,874,305	+		DZA65_RS22535	0.10	-1.6
4,874,305	+		DZA65_RS22535	0.10	-0.6
4,874,306	-		DZA65_RS22535	0.10	-3.0
4,874,306	-		DZA65_RS22535	0.10	-0.3
4,874,306	-		DZA65_RS22535	0.10	+0.4
4,874,306	-		DZA65_RS22535	0.10	-0.1
4,874,306	-		DZA65_RS22535	0.10	+0.9
4,874,306	-		DZA65_RS22535	0.10	-2.4
4,874,309	+		DZA65_RS22535	0.11	+0.5
4,874,309	+		DZA65_RS22535	0.11	-0.1
4,874,310	-		DZA65_RS22535	0.12	+2.7
4,874,310	-		DZA65_RS22535	0.12	+0.7
4,874,311	+		DZA65_RS22535	0.12	-0.8
4,874,311	+		DZA65_RS22535	0.12	-2.7
4,874,311	+		DZA65_RS22535	0.12	-1.3
4,874,311	+		DZA65_RS22535	0.12	-0.6
4,874,311	+		DZA65_RS22535	0.12	-2.4
4,874,312	-		DZA65_RS22535	0.12	-0.9
4,874,312	-		DZA65_RS22535	0.12	-1.3
4,874,380	+		DZA65_RS22535	0.36	-1.3
4,874,380	+		DZA65_RS22535	0.36	-0.3
4,874,380	+		DZA65_RS22535	0.36	-0.6
4,874,380	+		DZA65_RS22535	0.36	+0.1
4,874,380	+		DZA65_RS22535	0.36	+0.8
4,874,380	+		DZA65_RS22535	0.36	+0.4
4,874,380	+		DZA65_RS22535	0.36	+1.3
4,874,380	+		DZA65_RS22535	0.36	+0.2
4,874,380	+		DZA65_RS22535	0.36	+0.2
4,874,380	+		DZA65_RS22535	0.36	+1.3
4,874,380	+		DZA65_RS22535	0.36	-0.4
4,874,381	-		DZA65_RS22535	0.36	+0.5
4,874,381	-		DZA65_RS22535	0.36	+0.4
4,874,381	-		DZA65_RS22535	0.36	+0.3
4,874,381	-		DZA65_RS22535	0.36	+0.7
4,874,381	-		DZA65_RS22535	0.36	+0.6
4,874,381	-		DZA65_RS22535	0.36	-0.4
4,874,381	-		DZA65_RS22535	0.36	+0.7
4,874,381	-		DZA65_RS22535	0.36	-0.3
4,874,381	-		DZA65_RS22535	0.36	+1.0
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