Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22240

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,812,379	-				+1.0
4,812,379	-				+1.7
4,812,390	-				-2.3
4,812,390	-				-0.6
4,812,390	-				-0.9
4,812,390	-				-0.3
4,812,390	-				+1.4
4,812,390	-				+0.5
4,812,390	-				-0.6
4,812,390	-				+0.9
4,812,410	+				+2.5
4,812,410	+				-0.5
4,812,411	-				+0.7
4,812,411	-				-0.1
4,812,428	-				+0.7
4,812,477	+				-0.5
4,812,478	-				+1.1
4,812,506	+				+1.3
4,812,507	-				-0.0
4,812,507	-				-1.4
4,812,510	+				-1.0
4,812,540	+				+0.4
4,812,578	+				-1.0
4,812,578	+				-1.4
4,812,579	-				-0.3
4,812,579	-				+0.6
4,812,579	-				+0.1
4,812,579	-				-0.4
4,812,579	-				-0.4
4,812,607	-				+0.2
4,812,608	+				+1.4
4,812,608	+				+0.3
4,812,608	+				+0.4
4,812,609	-				+0.6
4,812,611	-				-0.3
4,812,725	-				-0.4
4,812,725	-				+0.6
4,812,750	+				-1.6
4,812,751	-				-2.4
4,812,760	+				-2.2
4,812,760	+				-0.1
4,812,772	+				-0.9
4,812,772	+				-0.6
4,812,772	+				-0.8
4,812,772	+				-1.9
4,812,772	+				-1.4
4,812,772	+				-1.1
4,812,772	+				+0.1
4,812,772	+				-1.4
4,812,773	-				-0.9
4,812,773	-				-0.6
4,812,773	-				-1.2
4,812,773	-				-0.1
4,812,810	+		DZA65_RS22240	0.14	+0.5
4,812,811	-		DZA65_RS22240	0.14	+0.1
4,812,817	+		DZA65_RS22240	0.15	-1.9
4,812,817	+		DZA65_RS22240	0.15	-1.3
4,812,817	+		DZA65_RS22240	0.15	-2.6
4,812,817	+		DZA65_RS22240	0.15	-0.1
4,812,817	+		DZA65_RS22240	0.15	-1.3
4,812,818	-		DZA65_RS22240	0.15	-1.6
4,812,818	-		DZA65_RS22240	0.15	-1.0
4,812,818	-		DZA65_RS22240	0.15	-2.1
4,812,818	-		DZA65_RS22240	0.15	-0.4
4,812,818	-		DZA65_RS22240	0.15	-0.9
4,812,818	-		DZA65_RS22240	0.15	-0.6
4,812,818	-		DZA65_RS22240	0.15	-0.6
4,812,912	-		DZA65_RS22240	0.30	-2.4
4,812,928	+		DZA65_RS22240	0.33	-3.4
4,812,928	+		DZA65_RS22240	0.33	-0.9
4,812,928	+		DZA65_RS22240	0.33	-0.7
4,812,929	-		DZA65_RS22240	0.33	+1.1
4,812,929	-		DZA65_RS22240	0.33	-0.6
4,812,942	+		DZA65_RS22240	0.35	-0.9
4,812,943	-		DZA65_RS22240	0.35	-0.3
4,812,943	-		DZA65_RS22240	0.35	-1.9
4,812,960	+		DZA65_RS22240	0.38	-2.9
4,812,960	+		DZA65_RS22240	0.38	-1.9
4,812,960	+		DZA65_RS22240	0.38	-0.7
4,812,960	+		DZA65_RS22240	0.38	-0.3
4,812,960	+		DZA65_RS22240	0.38	-0.0
4,812,961	-		DZA65_RS22240	0.38	-1.4
4,812,961	-		DZA65_RS22240	0.38	-2.2
4,812,961	-		DZA65_RS22240	0.38	+1.0
4,812,961	-		DZA65_RS22240	0.38	-0.3
4,813,055	+		DZA65_RS22240	0.53	-3.5
4,813,055	+		DZA65_RS22240	0.53	-1.1
4,813,056	-		DZA65_RS22240	0.53	-2.4
4,813,056	-		DZA65_RS22240	0.53	-2.4
4,813,059	+		DZA65_RS22240	0.54	-1.9
4,813,059	+		DZA65_RS22240	0.54	-1.0
4,813,059	+		DZA65_RS22240	0.54	+0.1
4,813,060	-		DZA65_RS22240	0.54	-1.6
4,813,060	-		DZA65_RS22240	0.54	-0.9
4,813,060	-		DZA65_RS22240	0.54	-2.2
4,813,114	+		DZA65_RS22240	0.63	-1.3
4,813,114	+		DZA65_RS22240	0.63	-0.7
4,813,114	+		DZA65_RS22240	0.63	-0.7
4,813,114	+		DZA65_RS22240	0.63	-1.6
4,813,114	+		DZA65_RS22240	0.63	-1.3
4,813,114	+		DZA65_RS22240	0.63	-1.9
4,813,114	+		DZA65_RS22240	0.63	-1.0
4,813,114	+		DZA65_RS22240	0.63	-0.2
4,813,115	-		DZA65_RS22240	0.63	-2.1
4,813,115	-		DZA65_RS22240	0.63	+0.4
4,813,115	-		DZA65_RS22240	0.63	-1.3
4,813,115	-		DZA65_RS22240	0.63	-2.6
4,813,115	-		DZA65_RS22240	0.63	+0.3
4,813,123	-		DZA65_RS22240	0.64	-0.7
4,813,172	-		DZA65_RS22240	0.72	-1.9
4,813,189	+		DZA65_RS22240	0.75	-0.0
4,813,204	+		DZA65_RS22240	0.77	-0.8
4,813,204	+				-0.3
4,813,204	+		DZA65_RS22240	0.77	-1.9
4,813,204	+		DZA65_RS22240	0.77	-2.0
4,813,204	+		DZA65_RS22240	0.77	+1.3
4,813,204	+		DZA65_RS22240	0.77	-1.1
4,813,204	+		DZA65_RS22240	0.77	-1.7
4,813,205	-		DZA65_RS22240	0.77	-1.6
4,813,205	-		DZA65_RS22240	0.77	-0.6
4,813,205	-		DZA65_RS22240	0.77	+0.1
4,813,259	+		DZA65_RS22240	0.86	-1.9
4,813,259	+		DZA65_RS22240	0.86	-1.0
4,813,259	+		DZA65_RS22240	0.86	-1.7
4,813,259	+		DZA65_RS22240	0.86	-0.3
4,813,259	+		DZA65_RS22240	0.86	-2.3
4,813,260	-		DZA65_RS22240	0.86	-1.9
4,813,260	-		DZA65_RS22240	0.86	+0.1
4,813,264	+		DZA65_RS22240	0.87	-1.3
4,813,265	-		DZA65_RS22240	0.87	-1.3
4,813,265	-		DZA65_RS22240	0.87	-1.6
4,813,271	+		DZA65_RS22240	0.88	-0.5
4,813,271	+		DZA65_RS22240	0.88	-0.9
4,813,336	-				-3.0
4,813,346	+				-1.9
4,813,346	+				-0.4
4,813,347	-				-0.4
4,813,347	-				-0.3
4,813,347	-				-0.5
4,813,355	+				-1.7
4,813,355	+				-2.6
4,813,356	-				+1.3
4,813,356	-				-0.9
4,813,362	+				-1.4
4,813,363	+				-0.4
4,813,363	+				-0.3
4,813,364	-				-0.5
4,813,364	-				+0.2
4,813,364	-				+1.3
4,813,364	-				+1.6
4,813,364	-				-0.6
4,813,364	-				-0.4
4,813,373	+				-0.0
4,813,373	+				-2.3
4,813,373	+				-2.2
4,813,373	+				+0.3
4,813,373	+				+0.1
4,813,373	+				-1.4
4,813,374	-				-0.0
4,813,374	-				-0.9
4,813,374	-				+0.7
4,813,374	-				-1.3
4,813,374	-				-2.3
4,813,414	+				-0.7
4,813,414	+				-1.1
4,813,414	+				-0.0
4,813,414	+				-1.3
4,813,415	-				-0.8
4,813,415	-				+1.0
4,813,431	+				-1.6
4,813,526	+		DZA65_RS22245	0.16	-0.6
4,813,527	-		DZA65_RS22245	0.16	-0.4
4,813,527	-		DZA65_RS22245	0.16	-1.6
4,813,527	-		DZA65_RS22245	0.16	+0.7
4,813,527	-		DZA65_RS22245	0.16	-0.9
4,813,536	+		DZA65_RS22245	0.17	+0.0
4,813,536	+		DZA65_RS22245	0.17	+1.8
4,813,536	+		DZA65_RS22245	0.17	+0.7
4,813,536	+		DZA65_RS22245	0.17	+0.0
4,813,537	-		DZA65_RS22245	0.17	+1.9
4,813,537	-		DZA65_RS22245	0.17	-0.6
4,813,537	-		DZA65_RS22245	0.17	+0.3
4,813,543	-		DZA65_RS22245	0.18	-1.4
4,813,543	-		DZA65_RS22245	0.18	-2.1
4,813,543	-		DZA65_RS22245	0.18	+2.1
4,813,601	+		DZA65_RS22245	0.24	-0.6
4,813,601	+		DZA65_RS22245	0.24	-1.3
4,813,601	+		DZA65_RS22245	0.24	-0.9
4,813,601	+		DZA65_RS22245	0.24	-0.4
4,813,601	+		DZA65_RS22245	0.24	+0.1
4,813,602	-		DZA65_RS22245	0.24	+0.7
4,813,654	+		DZA65_RS22245	0.29	+0.6
4,813,655	-		DZA65_RS22245	0.29	-0.7
4,813,737	+		DZA65_RS22245	0.37	-0.3
4,813,738	-		DZA65_RS22245	0.37	+0.1
4,813,738	-		DZA65_RS22245	0.37	+0.7
4,813,785	+		DZA65_RS22245	0.42	+1.1
4,813,785	+		DZA65_RS22245	0.42	-0.9
4,813,869	+		DZA65_RS22245	0.51	-0.4
4,813,870	-		DZA65_RS22245	0.51	-0.0
4,813,901	+		DZA65_RS22245	0.54	+0.7
4,813,902	-		DZA65_RS22245	0.54	+1.2
4,813,917	+		DZA65_RS22245	0.56	-0.7
4,813,917	+		DZA65_RS22245	0.56	-0.9
4,813,918	-		DZA65_RS22245	0.56	+0.3
4,813,920	+		DZA65_RS22245	0.56	-0.5
4,813,920	+		DZA65_RS22245	0.56	+2.0
4,813,920	+		DZA65_RS22245	0.56	+1.0
4,813,920	+		DZA65_RS22245	0.56	-0.4
4,813,920	+		DZA65_RS22245	0.56	-1.0
4,813,920	+		DZA65_RS22245	0.56	+0.4
4,813,920	+		DZA65_RS22245	0.56	-0.6
4,813,920	+		DZA65_RS22245	0.56	-1.1
4,813,921	-		DZA65_RS22245	0.56	+0.7
4,813,921	-		DZA65_RS22245	0.56	-0.1
4,813,921	-		DZA65_RS22245	0.56	-0.0
4,813,973	+		DZA65_RS22245	0.61	-0.4
4,813,973	+		DZA65_RS22245	0.61	-1.0
4,813,973	+		DZA65_RS22245	0.61	+2.9
4,813,974	-		DZA65_RS22245	0.61	+0.9
4,813,974	-		DZA65_RS22245	0.61	+0.2
4,814,015	+		DZA65_RS22245	0.65	+0.0
4,814,086	+		DZA65_RS22245	0.73	+3.0
4,814,087	-		DZA65_RS22245	0.73	+0.1
4,814,155	-		DZA65_RS22245	0.80	+0.6
4,814,201	+		DZA65_RS22245	0.84	-1.0
4,814,201	+		DZA65_RS22245	0.84	-2.1
4,814,201	+		DZA65_RS22245	0.84	+0.7
4,814,201	+		DZA65_RS22245	0.84	-0.0
4,814,202	-		DZA65_RS22245	0.84	-0.9
4,814,202	-		DZA65_RS22245	0.84	-0.9
4,814,202	-		DZA65_RS22245	0.84	-1.3
4,814,202	-		DZA65_RS22245	0.84	-0.5
4,814,202	-		DZA65_RS22245	0.84	+0.8
4,814,202	-		DZA65_RS22245	0.84	-0.9
4,814,208	+		DZA65_RS22245	0.85	-1.4
4,814,208	+		DZA65_RS22245	0.85	-0.6
4,814,208	+		DZA65_RS22245	0.85	-0.5
4,814,209	-		DZA65_RS22245	0.85	-0.3
4,814,209	-		DZA65_RS22245	0.85	+3.1
4,814,209	-		DZA65_RS22245	0.85	+0.7
4,814,223	+		DZA65_RS22245	0.87	-0.6
4,814,231	+		DZA65_RS22245	0.87	+0.3
4,814,246	+		DZA65_RS22245	0.89	+0.1
4,814,246	+		DZA65_RS22245	0.89	-1.3
4,814,246	+		DZA65_RS22245	0.89	+0.4
4,814,246	+		DZA65_RS22245	0.89	+1.6
4,814,246	+		DZA65_RS22245	0.89	-1.9
4,814,247	-		DZA65_RS22245	0.89	-1.3
4,814,247	-		DZA65_RS22245	0.89	+0.9
4,814,247	-		DZA65_RS22245	0.89	-0.7
4,814,250	+		DZA65_RS22245	0.89	-2.5
4,814,250	+		DZA65_RS22245	0.89	-0.4
4,814,250	+		DZA65_RS22245	0.89	-0.3
4,814,250	+		DZA65_RS22245	0.89	+1.7
4,814,250	+		DZA65_RS22245	0.89	+1.2
4,814,250	+		DZA65_RS22245	0.89	+1.1
4,814,250	+		DZA65_RS22245	0.89	-0.8
4,814,250	+		DZA65_RS22245	0.89	+0.7
4,814,250	+		DZA65_RS22245	0.89	+0.7
4,814,250	+		DZA65_RS22245	0.89	-0.3
4,814,250	+		DZA65_RS22245	0.89	+1.1
4,814,250	+		DZA65_RS22245	0.89	-0.1
4,814,250	+		DZA65_RS22245	0.89	+0.1
4,814,250	+		DZA65_RS22245	0.89	+0.4
4,814,250	+		DZA65_RS22245	0.89	-0.6
4,814,250	+		DZA65_RS22245	0.89	-1.0
4,814,250	+		DZA65_RS22245	0.89	+0.3
4,814,250	+		DZA65_RS22245	0.89	-1.3
4,814,250	+		DZA65_RS22245	0.89	-0.9
4,814,250	+		DZA65_RS22245	0.89	-1.3
4,814,250	+		DZA65_RS22245	0.89	-0.6
4,814,251	-		DZA65_RS22245	0.89	-0.6
4,814,251	-		DZA65_RS22245	0.89	+1.7
4,814,251	-		DZA65_RS22245	0.89	+0.4
4,814,251	-		DZA65_RS22245	0.89	-0.7
4,814,251	-		DZA65_RS22245	0.89	-0.2
4,814,251	-		DZA65_RS22245	0.89	+0.5
4,814,251	-		DZA65_RS22245	0.89	+2.3
4,814,251	-		DZA65_RS22245	0.89	+0.1
4,814,251	-		DZA65_RS22245	0.89	+0.3
4,814,251	-		DZA65_RS22245	0.89	-0.0
4,814,251	-		DZA65_RS22245	0.89	-2.4
4,814,251	-		DZA65_RS22245	0.89	+1.5
4,814,251	-		DZA65_RS22245	0.89	-0.3
4,814,251	-		DZA65_RS22245	0.89	-2.0
4,814,251	-		DZA65_RS22245	0.89	-1.5
4,814,251	-		DZA65_RS22245	0.89	+2.7
4,814,251	-		DZA65_RS22245	0.89	+0.9
4,814,251	-		DZA65_RS22245	0.89	-0.0
4,814,251	-		DZA65_RS22245	0.89	+1.1
4,814,251	-		DZA65_RS22245	0.89	-0.3
4,814,251	-		DZA65_RS22245	0.89	+0.6
4,814,251	-		DZA65_RS22245	0.89	+0.1
4,814,253	+				+1.7
4,814,253	+		DZA65_RS22245	0.90	+0.6
4,814,253	+		DZA65_RS22245	0.90	-0.0
4,814,253	+		DZA65_RS22245	0.90	-0.1
4,814,253	+		DZA65_RS22245	0.90	+0.4
4,814,253	+		DZA65_RS22245	0.90	-0.3
4,814,254	-		DZA65_RS22245	0.90	+0.7
4,814,254	-		DZA65_RS22245	0.90	+0.5
4,814,254	-		DZA65_RS22245	0.90	+1.5
4,814,254	-		DZA65_RS22245	0.90	+1.2
4,814,254	-		DZA65_RS22245	0.90	+0.7
4,814,254	-		DZA65_RS22245	0.90	+1.0
4,814,328	+				+0.4
4,814,328	+				+0.1
4,814,329	-				-0.1
4,814,329	-				-0.0