Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22235

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,809,042	+				-0.5
4,809,042	+				+0.2
4,809,042	+				-0.6
4,809,043	-				-1.2
4,809,045	+				-0.5
4,809,045	+				+1.7
4,809,045	+				-0.5
4,809,045	+				+0.3
4,809,045	+				-0.5
4,809,045	+				-1.8
4,809,045	+				+0.1
4,809,046	-				-0.9
4,809,046	-				+0.2
4,809,046	-				+1.2
4,809,046	-				+2.3
4,809,046	-				+0.4
4,809,046	-				+0.1
4,809,046	-				+0.1
4,809,089	-				+0.7
4,809,099	+				-0.5
4,809,099	+				-1.1
4,809,100	-				+0.5
4,809,100	-				+0.5
4,809,100	-				-1.4
4,809,115	+				-1.9
4,809,115	+				+0.3
4,809,115	+				-1.6
4,809,115	+				-1.9
4,809,115	+				+0.3
4,809,115	+				-1.3
4,809,115	+				+0.5
4,809,115	+				-2.1
4,809,115	+				+0.3
4,809,115	+				+0.7
4,809,116	-				+0.1
4,809,116	-				-0.2
4,809,116	-				+0.7
4,809,116	-				-0.3
4,809,116	-				-0.3
4,809,116	-				-3.1
4,809,154	-				-1.3
4,809,211	+				+0.7
4,809,211	+				+0.3
4,809,211	+				+1.6
4,809,212	-				-0.5
4,809,220	+				+2.3
4,809,220	+				+0.1
4,809,220	+				-0.1
4,809,220	+				-0.3
4,809,220	+				-0.6
4,809,221	-				-0.9
4,809,221	-				+1.1
4,809,221	-				-0.5
4,809,221	-				+0.6
4,809,221	-				-0.6
4,809,221	-				-0.2
4,809,236	+				+0.8
4,809,236	+				+1.3
4,809,236	+				+2.6
4,809,237	-				-1.6
4,809,246	+				+0.3
4,809,246	+				+1.7
4,809,246	+				-1.3
4,809,246	+				+1.7
4,809,259	+				-0.2
4,809,259	+				-0.1
4,809,260	-				-1.6
4,809,260	-				+0.0
4,809,260	-				-0.3
4,809,260	-				-0.9
4,809,268	-				-0.5
4,809,339	+				-0.7
4,809,392	+				-0.2
4,809,392	+				-0.4
4,809,433	+				+0.1
4,809,434	-				+1.7
4,809,466	+				-2.0
4,809,493	+				-0.3
4,809,493	+				+1.5
4,809,494	-				-1.4
4,809,494	-				+0.8
4,809,510	+				-0.9
4,809,510	+				+1.9
4,809,511	-				+2.1
4,812,379	-				+1.0
4,812,379	-				+1.7
4,812,390	-				-2.3
4,812,390	-				-0.6
4,812,390	-				-0.9
4,812,390	-				-0.3
4,812,390	-				+1.4
4,812,390	-				+0.5
4,812,390	-				-0.6
4,812,390	-				+0.9
4,812,410	+				+2.5
4,812,410	+				-0.5
4,812,411	-				+0.7
4,812,411	-				-0.1
4,812,428	-				+0.7
4,812,477	+				-0.5
4,812,478	-				+1.1
4,812,506	+				+1.3
4,812,507	-				-0.0
4,812,507	-				-1.4
4,812,510	+				-1.0
4,812,540	+				+0.4
4,812,578	+				-1.0
4,812,578	+				-1.4
4,812,579	-				-0.3
4,812,579	-				+0.6
4,812,579	-				+0.1
4,812,579	-				-0.4
4,812,579	-				-0.4
4,812,607	-				+0.2
4,812,608	+				+1.4
4,812,608	+				+0.3
4,812,608	+				+0.4
4,812,609	-				+0.6
4,812,611	-				-0.3
4,812,725	-				-0.4
4,812,725	-				+0.6
4,812,750	+				-1.6
4,812,751	-				-2.4
4,812,760	+				-2.2
4,812,760	+				-0.1
4,812,772	+				-0.9
4,812,772	+				-0.6
4,812,772	+				-0.8
4,812,772	+				-1.9
4,812,772	+				-1.4
4,812,772	+				-1.1
4,812,772	+				+0.1
4,812,772	+				-1.4
4,812,773	-				-0.9
4,812,773	-				-0.6
4,812,773	-				-1.2
4,812,773	-				-0.1
4,812,810	+		DZA65_RS22240	0.14	+0.5
4,812,811	-		DZA65_RS22240	0.14	+0.1
4,812,817	+		DZA65_RS22240	0.15	-1.9
4,812,817	+		DZA65_RS22240	0.15	-1.3
4,812,817	+		DZA65_RS22240	0.15	-2.6
4,812,817	+		DZA65_RS22240	0.15	-0.1
4,812,817	+		DZA65_RS22240	0.15	-1.3
4,812,818	-		DZA65_RS22240	0.15	-1.6
4,812,818	-		DZA65_RS22240	0.15	-1.0
4,812,818	-		DZA65_RS22240	0.15	-2.1
4,812,818	-		DZA65_RS22240	0.15	-0.4
4,812,818	-		DZA65_RS22240	0.15	-0.9
4,812,818	-		DZA65_RS22240	0.15	-0.6
4,812,818	-		DZA65_RS22240	0.15	-0.6
4,812,912	-		DZA65_RS22240	0.30	-2.4
4,812,928	+		DZA65_RS22240	0.33	-3.4
4,812,928	+		DZA65_RS22240	0.33	-0.9
4,812,928	+		DZA65_RS22240	0.33	-0.7
4,812,929	-		DZA65_RS22240	0.33	+1.1
4,812,929	-		DZA65_RS22240	0.33	-0.6
4,812,942	+		DZA65_RS22240	0.35	-0.9
4,812,943	-		DZA65_RS22240	0.35	-0.3
4,812,943	-		DZA65_RS22240	0.35	-1.9
4,812,960	+		DZA65_RS22240	0.38	-2.9
4,812,960	+		DZA65_RS22240	0.38	-1.9
4,812,960	+		DZA65_RS22240	0.38	-0.7
4,812,960	+		DZA65_RS22240	0.38	-0.3
4,812,960	+		DZA65_RS22240	0.38	-0.0
4,812,961	-		DZA65_RS22240	0.38	-1.4
4,812,961	-		DZA65_RS22240	0.38	-2.2
4,812,961	-		DZA65_RS22240	0.38	+1.0
4,812,961	-		DZA65_RS22240	0.38	-0.3
4,813,055	+		DZA65_RS22240	0.53	-3.5
4,813,055	+		DZA65_RS22240	0.53	-1.1
4,813,056	-		DZA65_RS22240	0.53	-2.4
4,813,056	-		DZA65_RS22240	0.53	-2.4
4,813,059	+		DZA65_RS22240	0.54	-1.9
4,813,059	+		DZA65_RS22240	0.54	-1.0
4,813,059	+		DZA65_RS22240	0.54	+0.1
4,813,060	-		DZA65_RS22240	0.54	-1.6
4,813,060	-		DZA65_RS22240	0.54	-0.9
4,813,060	-		DZA65_RS22240	0.54	-2.2
4,813,114	+		DZA65_RS22240	0.63	-1.3
4,813,114	+		DZA65_RS22240	0.63	-0.7
4,813,114	+		DZA65_RS22240	0.63	-0.7
4,813,114	+		DZA65_RS22240	0.63	-1.6
4,813,114	+		DZA65_RS22240	0.63	-1.3
4,813,114	+		DZA65_RS22240	0.63	-1.9
4,813,114	+		DZA65_RS22240	0.63	-1.0
4,813,114	+		DZA65_RS22240	0.63	-0.2
4,813,115	-		DZA65_RS22240	0.63	-2.1
4,813,115	-		DZA65_RS22240	0.63	+0.4
4,813,115	-		DZA65_RS22240	0.63	-1.3
4,813,115	-		DZA65_RS22240	0.63	-2.6
4,813,115	-		DZA65_RS22240	0.63	+0.3
4,813,123	-		DZA65_RS22240	0.64	-0.7
4,813,172	-		DZA65_RS22240	0.72	-1.9
4,813,189	+		DZA65_RS22240	0.75	-0.0
4,813,204	+		DZA65_RS22240	0.77	-0.8
4,813,204	+				-0.3
4,813,204	+		DZA65_RS22240	0.77	-1.9
4,813,204	+		DZA65_RS22240	0.77	-2.0
4,813,204	+		DZA65_RS22240	0.77	+1.3
4,813,204	+		DZA65_RS22240	0.77	-1.1
4,813,204	+		DZA65_RS22240	0.77	-1.7
4,813,205	-		DZA65_RS22240	0.77	-1.6
4,813,205	-		DZA65_RS22240	0.77	-0.6
4,813,205	-		DZA65_RS22240	0.77	+0.1
4,813,259	+		DZA65_RS22240	0.86	-1.9
4,813,259	+		DZA65_RS22240	0.86	-1.0
4,813,259	+		DZA65_RS22240	0.86	-1.7
4,813,259	+		DZA65_RS22240	0.86	-0.3
4,813,259	+		DZA65_RS22240	0.86	-2.3
4,813,260	-		DZA65_RS22240	0.86	-1.9
4,813,260	-		DZA65_RS22240	0.86	+0.1
4,813,264	+		DZA65_RS22240	0.87	-1.3
4,813,265	-		DZA65_RS22240	0.87	-1.3
4,813,265	-		DZA65_RS22240	0.87	-1.6
4,813,271	+		DZA65_RS22240	0.88	-0.5
4,813,271	+		DZA65_RS22240	0.88	-0.9
4,813,336	-				-3.0