Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22200

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,800,666	-		DZA65_RS22195	0.71	-1.6
4,800,671	+		DZA65_RS22195	0.71	+0.7
4,800,671	+		DZA65_RS22195	0.71	-1.0
4,800,672	-		DZA65_RS22195	0.71	-2.1
4,800,816	-		DZA65_RS22195	0.79	-0.9
4,800,816	-		DZA65_RS22195	0.79	-0.9
4,800,819	-		DZA65_RS22195	0.79	+0.7
4,800,844	+		DZA65_RS22195	0.80	-3.0
4,800,916	-		DZA65_RS22195	0.84	+1.3
4,800,916	-		DZA65_RS22195	0.84	-0.3
4,800,916	-		DZA65_RS22195	0.84	+1.1
4,800,997	+		DZA65_RS22195	0.89	-2.3
4,801,037	+				-0.6
4,801,095	-				+0.5
4,801,095	-				-3.5
4,801,170	-				-1.3
4,801,219	+				-1.6
4,801,220	-				-2.4
4,801,220	-				+0.1
4,801,225	+				-1.9
4,801,226	-				+1.0
4,801,234	-				-0.1
4,801,234	-				-0.7
4,801,238	+				+1.5
4,801,238	+				-1.3
4,801,239	-				-2.6
4,801,239	-				+0.2
4,801,239	-				-0.3
4,801,239	-				+0.2
4,801,239	-				-0.9
4,801,244	+				-1.9
4,801,244	+				-2.7
4,801,244	+				+0.7
4,801,244	+				+0.7
4,801,244	+				-0.0
4,801,244	+				-0.3
4,801,245	-				+0.5
4,801,245	-				-0.4
4,801,245	-				-1.4
4,801,245	-				-0.7
4,801,245	-				-0.1
4,801,245	-				-0.8
4,801,245	-				+0.4
4,801,245	-				+1.1
4,801,245	-				+0.6
4,801,245	-				-1.6
4,801,245	-				+0.9
4,801,331	-				-0.3
4,801,349	+				-0.9
4,801,349	+				-0.7
4,801,349	+				+0.5
4,801,349	+				-0.9
4,801,349	+				+0.3
4,801,349	+				-0.1
4,801,349	+				-2.0
4,801,350	-				-0.9
4,801,350	-				+2.3
4,801,350	-				+1.0
4,801,352	+				-1.7
4,801,352	+				-1.6
4,801,353	-				-2.0
4,801,353	-				+0.4
4,801,363	+				-0.0
4,801,363	+				-1.6
4,801,363	+				+0.5
4,801,364	-				-0.6
4,801,364	-				-0.6
4,801,396	+				-0.3
4,801,457	+				-0.6
4,801,457	+				-0.3
4,801,457	+				-1.4
4,801,457	+				+0.1
4,801,457	+				-1.6
4,801,458	-				+0.2
4,801,458	-				-0.7
4,801,470	-				-1.1
4,801,470	-				+0.2
4,801,491	+				-0.1
4,801,491	+				-0.3
4,801,492	-				+0.8
4,801,494	-				-1.3
4,801,494	-				-1.1
4,801,502	+				-1.3
4,801,503	-				+0.1
4,802,287	+		DZA65_RS22200	0.51	+0.1
4,802,980	+				+0.1
4,802,980	+				+1.1
4,802,980	+				-1.9
4,802,980	+				-0.3
4,802,980	+				+0.5
4,802,980	+				+1.1
4,802,980	+				-0.3
4,802,981	-				+1.0
4,802,981	-				-0.9
4,802,981	-				-0.3
4,802,981	-				+1.3
4,802,981	-				+0.7
4,802,983	+				-0.6
4,803,023	+				-1.1
4,803,023	+				+0.2
4,803,024	-				-0.7
4,803,024	-				-1.6
4,803,051	+				-1.6
4,803,052	-				-0.3
4,803,052	-				-1.4
4,803,052	-				-0.9
4,803,052	-				-0.9
4,803,057	+				-0.6
4,803,058	-				+0.7
4,803,058	-				+2.0
4,803,123	+				+0.5
4,803,123	+				-1.5
4,803,123	+				-0.9
4,803,123	+				-0.9
4,803,123	+				-1.1
4,803,123	+				+1.2
4,803,123	+				+1.4
4,803,123	+				-0.2
4,803,124	-				+1.2
4,803,124	-				+1.5
4,803,124	-				+1.2
4,803,124	-				-1.4
4,803,124	-				+0.3
4,803,124	-				-0.6
4,803,124	-				-0.5
4,803,124	-				+0.3
4,803,124	-				-3.0
4,803,132	+				-0.5
4,803,132	+				+1.6
4,803,132	+				-1.1
4,803,133	-				+1.1
4,803,133	-				-1.1
4,803,136	+				+1.1
4,803,136	+				-0.9
4,803,136	+				-0.3
4,803,136	+				-0.9
4,803,136	+				+0.5
4,803,136	+				+1.7
4,803,136	+				-0.9
4,803,136	+				-1.6
4,803,136	+				-0.4
4,803,136	+				+0.4
4,803,136	+				-0.2
4,803,136	+				+0.7
4,803,137	-				-0.7
4,803,137	-				-0.4
4,803,137	-				-0.6
4,803,137	-				-0.1
4,803,137	-				-1.1
4,803,137	-				+0.3
4,803,141	+				+0.7
4,803,142	-				+0.5
4,803,142	-				-2.4
4,803,142	-				+1.6
4,803,153	+				-1.1
4,803,153	+				-0.2
4,803,156	+				+0.1
4,803,156	+				-1.4
4,803,156	+				+0.7
4,803,157	-				+1.1
4,803,157	-				+0.2
4,803,157	-				-1.4
4,803,157	-				-0.7
4,803,157	-				-1.1
4,803,187	-				+0.7
4,803,277	+				-0.2
4,803,277	+				+0.4
4,803,278	-				-2.4
4,803,429	+		DZA65_RS22205	0.23	-1.3
4,803,429	+		DZA65_RS22205	0.23	+0.5
4,803,440	+		DZA65_RS22205	0.24	-0.5
4,803,440	+		DZA65_RS22205	0.24	+0.5
4,803,440	+		DZA65_RS22205	0.24	+0.0
4,803,441	-		DZA65_RS22205	0.24	+1.3
4,803,456	+		DZA65_RS22205	0.26	+0.2
4,803,456	+		DZA65_RS22205	0.26	-0.9
4,803,456	+		DZA65_RS22205	0.26	-0.1
4,803,456	+		DZA65_RS22205	0.26	+1.2
4,803,456	+		DZA65_RS22205	0.26	+1.1
4,803,456	+		DZA65_RS22205	0.26	-0.2
4,803,456	+		DZA65_RS22205	0.26	-0.3
4,803,456	+		DZA65_RS22205	0.26	+0.7
4,803,456	+		DZA65_RS22205	0.26	-0.5
4,803,456	+		DZA65_RS22205	0.26	-0.6
4,803,456	+		DZA65_RS22205	0.26	-0.3
4,803,456	+		DZA65_RS22205	0.26	-1.6
4,803,456	+		DZA65_RS22205	0.26	-0.1
4,803,456	+		DZA65_RS22205	0.26	-2.9
4,803,456	+		DZA65_RS22205	0.26	-1.2
4,803,456	+		DZA65_RS22205	0.26	-0.2
4,803,456	+		DZA65_RS22205	0.26	+0.7
4,803,456	+		DZA65_RS22205	0.26	+1.8
4,803,456	+		DZA65_RS22205	0.26	+0.7
4,803,456	+		DZA65_RS22205	0.26	+0.5
4,803,456	+		DZA65_RS22205	0.26	+0.5
4,803,456	+		DZA65_RS22205	0.26	+1.3
4,803,456	+		DZA65_RS22205	0.26	-0.1
4,803,456	+		DZA65_RS22205	0.26	+0.3
4,803,456	+		DZA65_RS22205	0.26	+0.3
4,803,456	+		DZA65_RS22205	0.26	+1.7
4,803,456	+		DZA65_RS22205	0.26	-1.4
4,803,456	+		DZA65_RS22205	0.26	+0.4
4,803,457	-		DZA65_RS22205	0.26	-1.3
4,803,457	-		DZA65_RS22205	0.26	-0.4
4,803,457	-		DZA65_RS22205	0.26	-1.0
4,803,457	-		DZA65_RS22205	0.26	+0.9
4,803,457	-		DZA65_RS22205	0.26	-1.1
4,803,685	+		DZA65_RS22205	0.47	-0.1
4,803,685	+		DZA65_RS22205	0.47	-1.6
4,803,685	+		DZA65_RS22205	0.47	-0.5
4,803,685	+		DZA65_RS22205	0.47	+0.5
4,803,685	+		DZA65_RS22205	0.47	+0.0
4,803,686	-		DZA65_RS22205	0.48	+1.7
4,803,723	+		DZA65_RS22205	0.51	+0.1
4,803,723	+		DZA65_RS22205	0.51	+0.7
4,803,723	+		DZA65_RS22205	0.51	-0.9
4,803,803	+		DZA65_RS22205	0.59	+0.3
4,803,804	-		DZA65_RS22205	0.59	-1.3
4,803,815	+		DZA65_RS22205	0.60	+0.5
4,803,856	+		DZA65_RS22205	0.64	-1.3
4,803,899	+		DZA65_RS22205	0.68	-1.7
4,803,899	+		DZA65_RS22205	0.68	+0.7
4,803,899	+		DZA65_RS22205	0.68	-0.9
4,803,899	+		DZA65_RS22205	0.68	+0.1
4,803,899	+		DZA65_RS22205	0.68	+0.7
4,803,899	+		DZA65_RS22205	0.68	+0.1
4,803,899	+		DZA65_RS22205	0.68	-0.3
4,803,900	-		DZA65_RS22205	0.68	-1.9
4,803,900	-		DZA65_RS22205	0.68	-1.0