Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22105

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,778,409	+		DZA65_RS22100	0.38	-1.9
4,778,409	+		DZA65_RS22100	0.38	+0.1
4,778,410	-		DZA65_RS22100	0.38	-0.3
4,778,410	-		DZA65_RS22100	0.38	-0.4
4,778,410	-		DZA65_RS22100	0.38	+0.1
4,778,410	-		DZA65_RS22100	0.38	-0.0
4,778,437	+		DZA65_RS22100	0.41	-0.6
4,778,453	+		DZA65_RS22100	0.42	-0.8
4,778,453	+		DZA65_RS22100	0.42	+2.1
4,778,453	+		DZA65_RS22100	0.42	+0.0
4,778,453	+		DZA65_RS22100	0.42	+0.1
4,778,453	+		DZA65_RS22100	0.42	-0.0
4,778,454	-		DZA65_RS22100	0.42	-0.7
4,778,454	-		DZA65_RS22100	0.42	+0.5
4,778,454	-		DZA65_RS22100	0.42	-2.1
4,778,454	-		DZA65_RS22100	0.42	-0.6
4,778,560	+		DZA65_RS22100	0.51	-0.2
4,778,560	+		DZA65_RS22100	0.51	-0.9
4,778,560	+		DZA65_RS22100	0.51	-1.3
4,778,561	-		DZA65_RS22100	0.51	+0.6
4,778,561	-		DZA65_RS22100	0.51	+0.1
4,778,561	-		DZA65_RS22100	0.51	-1.4
4,779,030	+				-1.3
4,779,030	+				+2.7
4,779,030	+				-0.2
4,779,030	+				-0.7
4,779,030	+				-0.2
4,779,030	+				+0.5
4,779,030	+				-1.3
4,779,030	+				+1.1
4,779,031	-				-0.9
4,779,031	-				+0.4
4,779,031	-				+1.2
4,779,033	+				-0.0
4,779,033	+				-0.9
4,779,033	+				-1.1
4,779,033	+				-0.0
4,779,033	+				-1.5
4,779,033	+				+0.3
4,779,033	+				-0.1
4,779,033	+				+0.8
4,779,033	+				+0.5
4,779,033	+				+1.1
4,779,033	+				-1.1
4,779,033	+				-1.5
4,779,033	+				-0.6
4,779,034	-				+1.2
4,779,034	-				-2.1
4,779,034	-				+1.3
4,779,034	-				+1.0
4,779,034	-				+1.3
4,779,034	-				-0.7
4,779,034	-				-0.3
4,779,034	-				-0.9
4,779,034	-				-0.3
4,779,034	-				+0.0
4,779,034	-				+0.4
4,779,034	-				-0.7
4,779,037	+				-0.4
4,779,037	+				-1.7
4,779,037	+				+0.2
4,779,038	-				-0.9
4,779,099	-				+0.6
4,779,119	+				-2.4
4,779,119	+				-0.8
4,779,119	+				+1.1
4,779,119	+				-0.2
4,779,119	+				+0.3
4,779,119	+				-0.6
4,779,119	+				+0.4
4,779,119	+				+0.7
4,779,119	+				-1.1
4,779,119	+				-2.3
4,779,119	+				+1.8
4,779,119	+				-1.5
4,779,119	+				-1.0
4,779,119	+				+0.7
4,779,119	+				-0.1
4,779,119	+				-0.4
4,779,119	+				-1.2
4,779,119	+				-0.5
4,779,119	+				-2.6
4,779,119	+				+0.5
4,779,119	+				-1.3
4,779,119	+				+0.1
4,779,119	+				-0.4
4,779,120	-				+0.7
4,779,120	-				-1.4
4,779,120	-				-0.2
4,779,120	-				+1.2
4,779,120	-				+1.5
4,779,120	-				+0.5
4,779,120	-				-0.0
4,779,120	-				+0.4
4,779,120	-				+1.7
4,779,120	-				+1.1
4,779,120	-				-0.3
4,779,173	+				-0.2
4,779,173	+				-3.1
4,779,173	+				+0.1
4,779,173	+				-0.8
4,779,173	+				+1.1
4,779,174	-				-0.2
4,779,174	-				-0.3
4,779,174	-				+2.6
4,779,174	-				+1.9
4,779,174	-				-0.3
4,779,174	-				-0.0
4,779,174	-				-1.7
4,779,174	-				+0.3
4,779,174	-				+1.3
4,779,213	+				-1.9
4,779,213	+				-0.1
4,779,213	+				+0.0
4,779,216	+				-0.6
4,779,216	+				-1.0
4,779,216	+				+1.0
4,779,216	+				+0.1
4,779,216	+				+0.7
4,779,216	+				-0.9
4,779,216	+				-0.4
4,779,216	+				+0.7
4,779,217	-				+1.1
4,779,217	-				-1.9
4,779,217	-				+0.7
4,779,217	-				+0.2
4,779,217	-				-0.3
4,779,217	-				-0.7
4,779,217	-				+0.3
4,779,217	-				-2.6
4,779,217	-				-0.3
4,779,220	+				+0.3
4,779,221	-				+0.7
4,779,221	-				+0.1
4,779,221	-				-1.0
4,779,221	-				+1.4
4,779,221	-				+1.2
4,779,235	+				-1.6
4,779,261	+				-2.0
4,779,262	-				-0.5
4,779,262	-				-1.0
4,779,262	-				+0.2
4,779,288	+				+2.2
4,779,566	+		DZA65_RS22105	0.35	-1.9
4,779,566	+		DZA65_RS22105	0.35	+0.6
4,779,567	-		DZA65_RS22105	0.36	+0.2
4,779,567	-		DZA65_RS22105	0.36	-1.0
4,779,567	-		DZA65_RS22105	0.36	-0.2
4,779,567	-		DZA65_RS22105	0.36	-0.3
4,779,629	+		DZA65_RS22105	0.43	+4.2
4,779,629	+		DZA65_RS22105	0.43	-1.4
4,779,629	+		DZA65_RS22105	0.43	+0.7
4,779,630	-		DZA65_RS22105	0.43	+0.0
4,779,667	+		DZA65_RS22105	0.47	+0.7
4,779,668	-		DZA65_RS22105	0.47	+1.2
4,779,668	-		DZA65_RS22105	0.47	-1.1
4,779,668	-		DZA65_RS22105	0.47	-1.4
4,779,798	+		DZA65_RS22105	0.62	+1.5
4,779,798	+		DZA65_RS22105	0.62	+0.7
4,779,798	+		DZA65_RS22105	0.62	+0.8
4,779,798	+		DZA65_RS22105	0.62	-0.9
4,779,798	+		DZA65_RS22105	0.62	+3.3
4,779,798	+		DZA65_RS22105	0.62	-0.4
4,779,798	+		DZA65_RS22105	0.62	+0.4
4,779,798	+		DZA65_RS22105	0.62	+0.1
4,779,798	+		DZA65_RS22105	0.62	+0.3
4,779,799	-		DZA65_RS22105	0.62	-0.3
4,779,799	-		DZA65_RS22105	0.62	-1.3
4,779,799	-		DZA65_RS22105	0.62	-0.5
4,779,799	-		DZA65_RS22105	0.62	-0.1
4,779,799	-		DZA65_RS22105	0.62	-0.6
4,779,799	-		DZA65_RS22105	0.62	+0.1
4,779,799	-		DZA65_RS22105	0.62	+1.1
4,779,799	-		DZA65_RS22105	0.62	-0.2
4,779,799	-		DZA65_RS22105	0.62	+0.1
4,779,799	-		DZA65_RS22105	0.62	+0.2
4,779,799	-		DZA65_RS22105	0.62	-2.3
4,779,799	-		DZA65_RS22105	0.62	-0.7
4,779,799	-		DZA65_RS22105	0.62	-0.9
4,779,863	+		DZA65_RS22105	0.69	+1.5
4,779,863	+				-0.3
4,779,863	+		DZA65_RS22105	0.69	+0.4
4,779,863	+		DZA65_RS22105	0.69	-0.1
4,779,863	+		DZA65_RS22105	0.69	-0.4
4,779,864	-		DZA65_RS22105	0.69	-2.3
4,779,944	+		DZA65_RS22105	0.78	+1.6
4,780,044	+		DZA65_RS22105	0.89	-0.7
4,780,100	+				+0.8
4,780,101	-				+0.7
4,780,101	-				-1.7
4,780,110	+				-1.0
4,780,111	-				+0.3
4,780,111	-				+1.8
4,780,111	-				-0.6
4,780,169	-				-1.4
4,780,169	-				+2.0
4,780,169	-				+1.2
4,780,252	+				+0.7
4,780,253	-				+0.1
4,780,265	+				-0.6
4,780,265	+				-1.3
4,780,265	+				+0.1
4,780,265	+				+1.1
4,780,265	+				+0.2
4,780,266	-				-0.0
4,780,266	-				+0.7
4,780,266	-				-1.4
4,780,266	-				-1.0
4,780,266	-				-0.9
4,780,266	-				+1.9
4,780,268	+				+0.6
4,780,268	+				+0.1
4,780,268	+				-2.1
4,780,268	+				+0.3
4,780,268	+				-1.9
4,780,268	+				+1.7
4,780,268	+				+0.5
4,780,268	+				+0.9
4,780,268	+				-1.9
4,780,268	+				+0.9
4,780,268	+				-1.9
4,780,268	+				+1.9
4,780,268	+				+0.1
4,780,268	+				-0.1
4,780,269	-				-0.9
4,780,269	-				+0.3
4,780,269	-				-0.4
4,780,269	-				-0.4
4,780,269	-				-0.3
4,780,269	-				-0.3
4,780,269	-				+0.3
4,780,269	-				-0.0
4,780,269	-				-0.3
4,780,269	-				-0.7
4,780,269	-				-1.6
4,780,269	-				+0.0
4,780,269	-				+0.4
4,780,270	+				-1.6
4,780,284	+				+0.4
4,780,284	+				-0.6
4,780,284	+				-0.7
4,780,284	+				-1.6
4,780,284	+				-1.1
4,780,284	+				+0.6
4,780,285	-				+1.5
4,780,285	-				+1.5
4,780,285	-				+1.1
4,780,285	-				-1.7
4,780,285	-				+0.5
4,780,286	+				-0.3
4,780,321	+				-0.9
4,780,322	-				-0.3
4,780,322	-				-0.6
4,780,322	-				-1.4
4,780,356	+				-1.1
4,780,390	+				+0.1
4,780,391	-				-0.3
4,780,391	-				-1.1
4,780,412	+				-0.8
4,780,413	-				+0.7
4,780,413	-				+1.3
4,780,423	+				+0.7
4,780,423	+				+0.6
4,780,423	+				+0.3
4,780,423	+				+0.7
4,780,423	+				+2.5
4,780,423	+				+0.0
4,780,424	-				+1.5
4,780,424	-				+0.1
4,780,424	-				+0.7
4,780,424	-				+0.9
4,780,424	-				-2.6
4,780,424	-				-1.7
4,780,494	+				+1.1
4,780,494	+				-0.9
4,780,494	+				-0.0
4,780,495	-				-1.7
4,780,495	-				+0.1
4,780,495	-				-0.3
4,780,495	-				+0.1
4,780,495	-				+1.5
4,780,604	+		DZA65_RS22110	0.16	+2.7
4,780,605	-		DZA65_RS22110	0.16	+1.3
4,780,605	-		DZA65_RS22110	0.16	+0.3
4,780,605	-		DZA65_RS22110	0.16	-0.3
4,780,608	+		DZA65_RS22110	0.17	+1.0
4,780,608	+		DZA65_RS22110	0.17	-0.1
4,780,608	+		DZA65_RS22110	0.17	+0.9
4,780,608	+		DZA65_RS22110	0.17	-0.3
4,780,608	+		DZA65_RS22110	0.17	+0.5
4,780,608	+		DZA65_RS22110	0.17	-0.9
4,780,608	+		DZA65_RS22110	0.17	+0.7
4,780,608	+		DZA65_RS22110	0.17	+1.4
4,780,608	+		DZA65_RS22110	0.17	+1.2
4,780,608	+		DZA65_RS22110	0.17	+1.7
4,780,608	+		DZA65_RS22110	0.17	-2.3
4,780,608	+		DZA65_RS22110	0.17	+0.2
4,780,608	+		DZA65_RS22110	0.17	+1.3
4,780,608	+		DZA65_RS22110	0.17	-2.4
4,780,608	+		DZA65_RS22110	0.17	-0.3
4,780,608	+		DZA65_RS22110	0.17	-0.3
4,780,608	+		DZA65_RS22110	0.17	+0.5
4,780,608	+		DZA65_RS22110	0.17	-1.6
4,780,608	+		DZA65_RS22110	0.17	-1.2
4,780,608	+		DZA65_RS22110	0.17	-1.4
4,780,608	+		DZA65_RS22110	0.17	-1.1
4,780,608	+		DZA65_RS22110	0.17	-0.0
4,780,608	+		DZA65_RS22110	0.17	-1.7
4,780,608	+		DZA65_RS22110	0.17	-1.3
4,780,608	+		DZA65_RS22110	0.17	-1.6
4,780,608	+		DZA65_RS22110	0.17	-0.3
4,780,608	+		DZA65_RS22110	0.17	+0.4
4,780,608	+		DZA65_RS22110	0.17	-1.1
4,780,608	+		DZA65_RS22110	0.17	+1.3
4,780,608	+		DZA65_RS22110	0.17	-0.9
4,780,608	+		DZA65_RS22110	0.17	-1.3
4,780,608	+		DZA65_RS22110	0.17	-1.0
4,780,608	+		DZA65_RS22110	0.17	-0.5
4,780,608	+		DZA65_RS22110	0.17	+1.3
4,780,608	+		DZA65_RS22110	0.17	-0.9
4,780,608	+		DZA65_RS22110	0.17	-0.9
4,780,608	+		DZA65_RS22110	0.17	-0.7
4,780,609	-				+0.7
4,780,609	-		DZA65_RS22110	0.17	+1.0
4,780,609	-		DZA65_RS22110	0.17	+0.2
4,780,609	-		DZA65_RS22110	0.17	+0.2
4,780,609	-		DZA65_RS22110	0.17	+0.8
4,780,609	-		DZA65_RS22110	0.17	-1.4
4,780,609	-		DZA65_RS22110	0.17	+0.7
4,780,609	-		DZA65_RS22110	0.17	-1.3
4,780,609	-		DZA65_RS22110	0.17	+0.1
4,780,609	-		DZA65_RS22110	0.17	+1.7
4,780,609	-		DZA65_RS22110	0.17	+0.8
4,780,609	-		DZA65_RS22110	0.17	+0.6
4,780,609	-		DZA65_RS22110	0.17	-0.9
4,780,609	-		DZA65_RS22110	0.17	+1.7
4,780,609	-		DZA65_RS22110	0.17	+0.1
4,780,609	-		DZA65_RS22110	0.17	+0.8
4,780,609	-		DZA65_RS22110	0.17	+0.6
4,780,609	-		DZA65_RS22110	0.17	+0.7
4,780,609	-		DZA65_RS22110	0.17	+0.1
4,780,609	-		DZA65_RS22110	0.17	+0.2
4,780,609	-		DZA65_RS22110	0.17	-0.3
4,780,609	-		DZA65_RS22110	0.17	+1.0
4,780,609	-		DZA65_RS22110	0.17	-0.1
4,780,609	-		DZA65_RS22110	0.17	-3.0
4,780,609	-		DZA65_RS22110	0.17	-1.1
4,780,609	-		DZA65_RS22110	0.17	+0.4
4,780,609	-		DZA65_RS22110	0.17	-0.9
4,780,609	-		DZA65_RS22110	0.17	-0.1
4,780,609	-		DZA65_RS22110	0.17	-2.7
4,780,609	-		DZA65_RS22110	0.17	+1.0
4,780,609	-		DZA65_RS22110	0.17	-2.1
4,780,609	-		DZA65_RS22110	0.17	-0.8
4,780,609	-		DZA65_RS22110	0.17	+0.3
4,780,609	-		DZA65_RS22110	0.17	-0.0
4,780,609	-		DZA65_RS22110	0.17	-0.7
4,780,609	-		DZA65_RS22110	0.17	+0.4
4,780,609	-		DZA65_RS22110	0.17	-0.8
4,780,609	-		DZA65_RS22110	0.17	+0.1
4,780,609	-		DZA65_RS22110	0.17	-0.3
4,780,609	-		DZA65_RS22110	0.17	-2.0
4,780,632	+		DZA65_RS22110	0.21	+1.3
4,780,632	+		DZA65_RS22110	0.21	-1.1
4,780,633	-		DZA65_RS22110	0.21	-0.0
4,780,633	-		DZA65_RS22110	0.21	-1.6
4,780,635	+		DZA65_RS22110	0.21	+1.6
4,780,636	-		DZA65_RS22110	0.21	+0.7
4,780,636	-		DZA65_RS22110	0.21	+0.6
4,780,647	+		DZA65_RS22110	0.23	-0.6
4,780,647	+		DZA65_RS22110	0.23	+0.2
4,780,647	+		DZA65_RS22110	0.23	+0.2
4,780,648	-		DZA65_RS22110	0.23	+0.7
4,780,648	-		DZA65_RS22110	0.23	+0.1
4,780,648	-		DZA65_RS22110	0.23	-0.5
4,780,648	-		DZA65_RS22110	0.23	+1.6
4,780,648	-		DZA65_RS22110	0.23	-1.3
4,780,648	-		DZA65_RS22110	0.23	-1.0
4,780,649	+		DZA65_RS22110	0.23	-0.6
4,780,649	+		DZA65_RS22110	0.23	-0.7
4,780,649	+		DZA65_RS22110	0.23	-1.4
4,780,649	+		DZA65_RS22110	0.23	+1.3
4,780,649	+		DZA65_RS22110	0.23	+0.3
4,780,650	-		DZA65_RS22110	0.23	-0.3
4,780,725	+		DZA65_RS22110	0.35	-0.1
4,780,725	+		DZA65_RS22110	0.35	-0.1
4,780,725	+		DZA65_RS22110	0.35	-0.6
4,780,725	+		DZA65_RS22110	0.35	-2.3
4,780,725	+		DZA65_RS22110	0.35	+0.4
4,780,725	+		DZA65_RS22110	0.35	+0.3
4,780,725	+		DZA65_RS22110	0.35	+0.8
4,780,725	+		DZA65_RS22110	0.35	+0.7
4,780,725	+		DZA65_RS22110	0.35	+1.0
4,780,725	+		DZA65_RS22110	0.35	+0.7
4,780,726	-		DZA65_RS22110	0.35	+0.1
4,780,726	-		DZA65_RS22110	0.35	-0.3
4,780,740	+		DZA65_RS22110	0.37	-2.1
4,780,845	+		DZA65_RS22110	0.54	+0.2
4,780,845	+		DZA65_RS22110	0.54	+0.5
4,780,845	+		DZA65_RS22110	0.54	+0.1
4,780,846	-		DZA65_RS22110	0.54	-0.7
4,780,846	-		DZA65_RS22110	0.54	+0.0
4,780,846	-		DZA65_RS22110	0.54	+0.1
4,780,846	-		DZA65_RS22110	0.54	+0.1
4,780,851	+		DZA65_RS22110	0.55	+0.1
4,780,851	+		DZA65_RS22110	0.55	+1.1
4,780,851	+		DZA65_RS22110	0.55	+0.5
4,780,851	+		DZA65_RS22110	0.55	+0.4
4,780,852	-		DZA65_RS22110	0.55	+0.3
4,780,852	-		DZA65_RS22110	0.55	-2.2
4,780,852	-		DZA65_RS22110	0.55	-0.1
4,780,852	-		DZA65_RS22110	0.55	+1.8
4,780,852	-		DZA65_RS22110	0.55	+0.1
4,780,852	-		DZA65_RS22110	0.55	+1.7
4,780,852	-		DZA65_RS22110	0.55	-0.9
4,780,852	-		DZA65_RS22110	0.55	-0.6
4,780,852	-		DZA65_RS22110	0.55	+1.4
4,780,897	+		DZA65_RS22110	0.62	-2.3
4,780,897	+		DZA65_RS22110	0.62	+1.9
4,780,897	+		DZA65_RS22110	0.62	-2.6
4,780,897	+		DZA65_RS22110	0.62	-0.0
4,780,897	+		DZA65_RS22110	0.62	-0.9
4,780,898	-		DZA65_RS22110	0.62	-2.1
4,780,898	-		DZA65_RS22110	0.62	+0.1
4,780,898	-		DZA65_RS22110	0.62	+0.3
4,780,898	-		DZA65_RS22110	0.62	-0.9
4,780,904	-		DZA65_RS22110	0.63	+0.9
4,780,904	-		DZA65_RS22110	0.63	-0.3
4,780,913	+		DZA65_RS22110	0.64	+0.1
4,780,913	+		DZA65_RS22110	0.64	-0.4
4,780,914	-		DZA65_RS22110	0.64	-0.3
4,780,914	-		DZA65_RS22110	0.64	-0.5
4,780,914	-		DZA65_RS22110	0.64	+1.3
4,780,914	-		DZA65_RS22110	0.64	+0.7
4,780,914	-		DZA65_RS22110	0.64	+0.2
4,780,925	+		DZA65_RS22110	0.66	+1.1
4,780,951	+		DZA65_RS22110	0.70	+0.0
4,780,951	+		DZA65_RS22110	0.70	+0.5
4,780,951	+		DZA65_RS22110	0.70	+1.2
4,780,951	+		DZA65_RS22110	0.70	-0.1
4,780,951	+		DZA65_RS22110	0.70	+0.2
4,780,951	+		DZA65_RS22110	0.70	-2.7
4,780,952	-		DZA65_RS22110	0.70	-0.7
4,780,952	-		DZA65_RS22110	0.70	-0.3
4,780,952	-		DZA65_RS22110	0.70	+0.3
4,780,952	-		DZA65_RS22110	0.70	+0.9
4,780,952	-				-1.3
4,781,007	-		DZA65_RS22110	0.79	+0.1
4,781,075	+		DZA65_RS22110	0.90	+0.7
4,781,076	-		DZA65_RS22110	0.90	-0.2
4,781,106	+				-0.1
4,781,106	+				+4.3
4,781,106	+				-0.9
4,781,106	+				-0.3
4,781,107	-				+3.1
4,781,107	-				+0.6
4,781,140	-				+0.3