Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22025

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,761,886	+		DZA65_RS22015	0.85	-0.0
4,761,903	-		DZA65_RS22015	0.87	+1.9
4,761,909	-		DZA65_RS22015	0.87	-3.0
4,761,938	+		DZA65_RS22015	0.89	-0.2
4,761,938	+		DZA65_RS22015	0.89	+0.5
4,761,973	+				-0.0
4,761,973	+				-0.6
4,762,051	+				-0.7
4,762,052	-				+1.1
4,762,052	-				+0.6
4,762,054	+				+0.6
4,762,054	+				-1.3
4,762,055	-				+0.6
4,762,055	-				-0.3
4,762,072	+				-0.3
4,762,088	+				-0.7
4,762,088	+				-1.8
4,762,089	-				-0.3
4,762,092	+				+0.1
4,762,092	+				+0.7
4,762,092	+				+0.2
4,762,092	+				-0.0
4,762,092	+				-0.9
4,762,093	-				+2.5
4,762,093	-				-0.2
4,762,093	-				+1.1
4,762,093	-				-0.4
4,762,116	+				-1.2
4,762,116	+				+0.3
4,762,150	+		DZA65_RS22020	0.11	-0.1
4,762,213	+		DZA65_RS22020	0.21	-1.5
4,762,213	+		DZA65_RS22020	0.21	-0.1
4,762,213	+		DZA65_RS22020	0.21	-1.1
4,762,213	+		DZA65_RS22020	0.21	+1.0
4,762,214	-		DZA65_RS22020	0.21	-0.2
4,762,214	-		DZA65_RS22020	0.21	+1.1
4,762,225	+				-0.9
4,762,252	-		DZA65_RS22020	0.27	-0.9
4,762,390	-		DZA65_RS22020	0.49	-2.1
4,762,428	+		DZA65_RS22020	0.55	-0.3
4,762,428	+		DZA65_RS22020	0.55	-1.4
4,762,428	+		DZA65_RS22020	0.55	-0.3
4,762,428	+		DZA65_RS22020	0.55	-0.5
4,762,428	+		DZA65_RS22020	0.55	-1.9
4,762,428	+		DZA65_RS22020	0.55	+0.5
4,762,429	-		DZA65_RS22020	0.55	-0.3
4,762,429	-		DZA65_RS22020	0.55	+2.0
4,762,429	-		DZA65_RS22020	0.55	-0.5
4,762,476	+		DZA65_RS22020	0.63	+0.1
4,762,476	+		DZA65_RS22020	0.63	-1.5
4,762,477	-		DZA65_RS22020	0.63	-0.3
4,762,477	-		DZA65_RS22020	0.63	+1.5
4,762,489	-		DZA65_RS22020	0.65	-0.3
4,762,533	-		DZA65_RS22020	0.72	+0.7
4,762,533	-		DZA65_RS22020	0.72	-1.1
4,762,559	+		DZA65_RS22020	0.76	+0.2
4,762,560	-		DZA65_RS22020	0.76	-0.1
4,762,610	+		DZA65_RS22020	0.84	-1.3
4,762,611	-		DZA65_RS22020	0.84	+0.3
4,762,611	-		DZA65_RS22020	0.84	+1.1
4,762,611	-		DZA65_RS22020	0.84	-0.5
4,762,620	+		DZA65_RS22020	0.86	-0.5
4,762,623	+		DZA65_RS22020	0.86	+1.2
4,762,663	+				+2.3
4,762,663	+				+1.0
4,762,664	-				+2.1
4,762,680	+				+0.4
4,762,680	+				-0.0
4,762,680	+				+0.5
4,762,681	-				-1.3
4,762,681	-				+0.9
4,762,684	-				-0.6
4,762,707	-				-0.9
4,762,708	+				-0.2
4,762,708	+				+0.7
4,762,708	+				-0.7
4,762,708	+				+1.0
4,762,708	+				+0.7
4,762,708	+				+0.5
4,762,708	+				+1.1
4,762,709	-				+0.4
4,762,709	-				+0.1
4,762,709	-				-0.0
4,762,709	-				-0.0
4,762,721	+				-0.3
4,762,721	+				-1.2
4,762,721	+				+2.3
4,762,721	+				+0.5
4,762,721	+				-0.5
4,762,722	-				+1.5
4,762,722	-				-0.0
4,762,722	-				-0.0
4,762,722	-				-1.1
4,762,722	-				-0.6
4,762,722	-				+0.3
4,762,722	-				-1.5
4,762,725	+				-0.4
4,762,725	+				-0.7
4,762,726	-				+1.0
4,762,726	-				+0.3
4,762,788	+				+0.2
4,762,789	-				+1.7
4,762,789	-				+0.1
4,762,789	-				+1.0
4,762,789	-				-0.5
4,762,789	-				+0.6
4,762,789	-				-0.3
4,762,789	-				-3.1
4,762,789	-				-1.5
4,762,811	-				+0.1
4,762,816	+				+0.1
4,762,816	+				+1.1
4,762,816	+				-0.9
4,762,817	-				-0.5
4,762,817	-				-0.3
4,762,820	-				-0.6
4,762,826	-				-1.5
4,762,828	+				-0.4
4,762,829	-				+0.6
4,762,829	-				-0.0
4,762,829	-				-2.1
4,762,829	-				+0.4
4,762,829	-				+0.1
4,762,837	+				-0.3
4,762,837	+				-1.7
4,762,838	-				+0.4
4,762,838	-				+0.1
4,762,838	-				-0.0
4,762,838	-				+3.7
4,762,955	+		DZA65_RS22025	0.47	+0.3
4,763,024	+		DZA65_RS22025	0.73	-1.0
4,763,025	-		DZA65_RS22025	0.73	-1.3
4,763,104	-				-0.2
4,763,128	+				-0.7
4,763,128	+				-1.1
4,763,128	+				+1.9
4,763,128	+				-0.6
4,763,128	+				+0.5
4,763,128	+				+1.5
4,763,128	+				+0.7
4,763,128	+				+0.7
4,763,128	+				-0.6
4,763,128	+				+0.1
4,763,128	+				+1.4
4,763,128	+				-1.4
4,763,128	+				+0.6
4,763,129	-				-1.8
4,763,129	-				-0.9
4,763,129	-				-0.9
4,763,129	-				+0.1
4,763,129	-				+1.4
4,763,129	-				-0.4
4,763,129	-				+1.2
4,763,129	-				+0.4
4,763,129	-				+0.7
4,763,129	-				-1.7
4,763,129	-				+1.2
4,763,168	+				+0.1
4,763,169	-				-0.5
4,763,172	-				+1.2
4,763,429	+		DZA65_RS22030	0.16	-0.1
4,763,536	+		DZA65_RS22030	0.28	+0.1
4,763,536	+		DZA65_RS22030	0.28	+0.9
4,763,536	+		DZA65_RS22030	0.28	+0.4
4,763,536	+		DZA65_RS22030	0.28	-0.9
4,763,537	-		DZA65_RS22030	0.28	+1.0
4,763,537	-		DZA65_RS22030	0.28	+1.5
4,763,537	-		DZA65_RS22030	0.28	+0.7
4,763,747	+		DZA65_RS22030	0.52	+0.4
4,763,747	+		DZA65_RS22030	0.52	+0.1
4,763,747	+		DZA65_RS22030	0.52	-1.0
4,763,747	+		DZA65_RS22030	0.52	-0.6
4,763,748	-		DZA65_RS22030	0.52	-0.1
4,763,748	-		DZA65_RS22030	0.52	-0.9
4,763,748	-		DZA65_RS22030	0.52	-0.6
4,763,748	-		DZA65_RS22030	0.52	+0.3
4,763,748	-		DZA65_RS22030	0.52	+0.7
4,763,748	-		DZA65_RS22030	0.52	+0.7
4,763,748	-		DZA65_RS22030	0.52	-0.3
4,763,748	-				+2.6
4,763,748	-		DZA65_RS22030	0.52	-0.1
4,763,749	+		DZA65_RS22030	0.53	+3.1
4,763,749	+		DZA65_RS22030	0.53	+1.6
4,763,749	+		DZA65_RS22030	0.53	-0.6
4,763,749	+		DZA65_RS22030	0.53	-0.5
4,763,749	+		DZA65_RS22030	0.53	+0.3
4,763,750	-		DZA65_RS22030	0.53	-0.3
4,763,750	-		DZA65_RS22030	0.53	-0.5
4,763,750	-		DZA65_RS22030	0.53	-0.3
4,763,750	-		DZA65_RS22030	0.53	+0.7
4,763,807	+		DZA65_RS22030	0.59	+1.4
4,763,807	+		DZA65_RS22030	0.59	-0.7
4,763,807	+		DZA65_RS22030	0.59	+1.3
4,763,807	+		DZA65_RS22030	0.59	-0.5
4,763,807	+		DZA65_RS22030	0.59	+1.2
4,763,807	+		DZA65_RS22030	0.59	+0.2
4,763,808	-		DZA65_RS22030	0.59	+0.6
4,763,808	-		DZA65_RS22030	0.59	-0.3
4,763,808	-		DZA65_RS22030	0.59	+1.0
4,763,808	-		DZA65_RS22030	0.59	-2.2
4,763,808	-		DZA65_RS22030	0.59	-0.3
4,763,850	-		DZA65_RS22030	0.64	-1.3
4,763,965	+		DZA65_RS22030	0.78	-0.7
4,763,966	-		DZA65_RS22030	0.78	-0.2
4,763,978	-		DZA65_RS22030	0.79	-0.5
4,763,978	-		DZA65_RS22030	0.79	+1.3
4,764,056	+		DZA65_RS22030	0.88	+0.3
4,764,056	+		DZA65_RS22030	0.88	-0.1
4,764,056	+		DZA65_RS22030	0.88	-0.3
4,764,056	+		DZA65_RS22030	0.88	+0.5
4,764,056	+		DZA65_RS22030	0.88	+0.7
4,764,057	-		DZA65_RS22030	0.88	+0.6
4,764,057	-		DZA65_RS22030	0.88	-3.0
4,764,057	-		DZA65_RS22030	0.88	+0.7
4,764,057	-		DZA65_RS22030	0.88	-0.3
4,764,057	-		DZA65_RS22030	0.88	+0.1
4,764,057	-		DZA65_RS22030	0.88	+1.2
4,764,057	-		DZA65_RS22030	0.88	-1.3
4,764,057	-		DZA65_RS22030	0.88	-0.9
4,764,065	+		DZA65_RS22030	0.89	+1.0