Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21960

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,748,523	-		DZA65_RS21950	0.69	+0.4
4,748,523	-		DZA65_RS21950	0.69	+0.1
4,748,523	-		DZA65_RS21950	0.69	-1.3
4,748,523	-		DZA65_RS21950	0.69	-0.3
4,748,525	+		DZA65_RS21950	0.70	+1.5
4,748,525	+		DZA65_RS21950	0.70	-0.2
4,748,525	+		DZA65_RS21950	0.70	+0.6
4,748,525	+		DZA65_RS21950	0.70	-1.4
4,748,525	+		DZA65_RS21950	0.70	-0.7
4,748,526	-		DZA65_RS21950	0.70	-0.6
4,748,526	-		DZA65_RS21950	0.70	-0.7
4,748,538	-		DZA65_RS21950	0.73	+1.3
4,748,560	+		DZA65_RS21950	0.78	-1.6
4,748,561	-		DZA65_RS21950	0.78	+0.7
4,748,561	-		DZA65_RS21950	0.78	+0.0
4,748,561	-		DZA65_RS21950	0.78	+0.0
4,748,561	-		DZA65_RS21950	0.78	-0.9
4,748,643	+				+0.1
4,748,650	+				-0.6
4,748,650	+				+1.2
4,748,651	-				-0.2
4,748,651	-				-0.5
4,748,651	-				+0.0
4,748,660	+				-1.6
4,748,661	-				-2.1
4,748,666	+				+1.0
4,748,666	+				-0.7
4,748,666	+				-1.1
4,748,666	+				-2.3
4,748,667	-				-0.9
4,748,667	-				-0.3
4,748,667	-				+0.3
4,748,667	-				-1.5
4,748,689	-				-1.6
4,748,689	-				+0.1
4,748,735	+				-0.5
4,748,735	+				+0.9
4,748,735	+				+0.6
4,748,735	+				+0.5
4,748,735	+				-0.0
4,748,735	+				-1.1
4,748,736	-				-1.9
4,748,736	-				-0.4
4,748,736	-				+1.5
4,748,736	-				+0.5
4,748,736	-				+0.1
4,748,736	-				+1.8
4,748,736	-				+0.4
4,748,736	-				-0.9
4,748,806	+				-0.5
4,748,806	+				-0.3
4,748,806	+				+1.9
4,748,812	+				+0.6
4,748,812	+				+0.5
4,748,813	-				+2.0
4,748,813	-				-0.3
4,748,903	+		DZA65_RS21955	0.22	-0.1
4,748,965	+		DZA65_RS21955	0.37	-0.0
4,748,965	+		DZA65_RS21955	0.37	+2.1
4,748,965	+		DZA65_RS21955	0.37	+1.6
4,748,971	+		DZA65_RS21955	0.39	+0.1
4,748,971	+		DZA65_RS21955	0.39	-0.0
4,748,971	+		DZA65_RS21955	0.39	-0.2
4,748,971	+		DZA65_RS21955	0.39	-2.1
4,748,971	+		DZA65_RS21955	0.39	+0.1
4,748,971	+		DZA65_RS21955	0.39	+0.1
4,748,971	+		DZA65_RS21955	0.39	+0.3
4,748,971	+		DZA65_RS21955	0.39	-0.1
4,748,972	-		DZA65_RS21955	0.39	-0.3
4,748,972	-		DZA65_RS21955	0.39	-0.7
4,748,972	-		DZA65_RS21955	0.39	-0.3
4,748,972	-		DZA65_RS21955	0.39	+0.1
4,748,972	-		DZA65_RS21955	0.39	-0.4
4,748,972	-		DZA65_RS21955	0.39	-0.3
4,748,972	-		DZA65_RS21955	0.39	-0.9
4,748,972	-		DZA65_RS21955	0.39	+0.7
4,748,972	-		DZA65_RS21955	0.39	-0.3
4,748,972	-		DZA65_RS21955	0.39	-0.9
4,748,972	-		DZA65_RS21955	0.39	-0.8
4,748,972	-		DZA65_RS21955	0.39	-1.6
4,748,972	-		DZA65_RS21955	0.39	-0.4
4,749,113	+		DZA65_RS21955	0.73	-0.1
4,749,114	-		DZA65_RS21955	0.73	-0.4
4,749,114	-		DZA65_RS21955	0.73	-3.0
4,749,116	-		DZA65_RS21955	0.74	+0.3
4,749,116	-		DZA65_RS21955	0.74	+0.7
4,749,116	-		DZA65_RS21955	0.74	+0.2
4,749,164	+		DZA65_RS21955	0.85	+0.0
4,749,165	-		DZA65_RS21955	0.86	+0.0
4,749,218	+				-0.4
4,749,218	+				+0.9
4,749,219	-				+0.3
4,749,225	-				-1.4
4,749,300	+				+0.1
4,749,301	-				+0.2
4,749,301	-				-1.5
4,749,301	-				-0.1
4,749,301	-				+0.3
4,749,301	-				+0.7
4,749,301	-				-1.6
4,749,301	-				+0.5
4,749,301	-				+0.5
4,749,301	-				+0.4
4,749,313	+				+0.5
4,749,314	-				+0.3
4,749,338	-				+1.1
4,749,385	-				+1.8
4,749,406	+				-2.4
4,749,406	+				+0.0
4,749,406	+				+1.0
4,749,406	+				+0.9
4,749,406	+				-1.3
4,749,407	-				-2.2
4,749,414	+				-1.5
4,749,414	+				+0.1
4,749,414	+				-0.6
4,749,414	+				-0.7
4,749,414	+				-0.3
4,749,414	+				-0.6
4,749,414	+				+0.1
4,749,414	+				-1.6
4,749,414	+				-0.3
4,749,414	+				-2.1
4,749,415	-				-2.4
4,749,415	-				-0.3
4,749,415	-				+0.4
4,749,415	-				-0.0
4,749,415	-				-0.0
4,749,415	-				-0.7
4,749,415	-				-0.4
4,749,415	-				-0.3
4,749,415	-				-0.4
4,749,415	-				+0.9
4,749,415	-				-1.3
4,749,445	+				+0.3
4,749,465	+				-0.0
4,749,465	+				-0.5
4,749,465	+				+0.5
4,749,465	+				-0.9
4,749,466	-				+1.3
4,749,466	-				-0.9
4,749,519	+				+0.3
4,749,519	+				-0.2
4,749,520	-				+0.7
4,749,533	+				+0.2
4,749,634	+		DZA65_RS21960	0.30	-0.7
4,749,638	-		DZA65_RS21960	0.31	-1.6
4,749,638	-		DZA65_RS21960	0.31	-1.4
4,749,638	-		DZA65_RS21960	0.31	+0.5
4,749,707	+		DZA65_RS21960	0.49	+0.7
4,749,708	-		DZA65_RS21960	0.49	-0.9
4,749,757	+		DZA65_RS21960	0.62	+0.8
4,749,757	+		DZA65_RS21960	0.62	+1.6
4,749,758	-		DZA65_RS21960	0.63	-0.6
4,749,763	+		DZA65_RS21960	0.64	-1.2
4,749,763	+		DZA65_RS21960	0.64	-0.3
4,749,763	+				+0.1
4,749,763	+		DZA65_RS21960	0.64	+1.0
4,749,763	+		DZA65_RS21960	0.64	+0.4
4,749,763	+		DZA65_RS21960	0.64	-1.6
4,749,763	+		DZA65_RS21960	0.64	-0.5
4,749,763	+		DZA65_RS21960	0.64	-2.1
4,749,763	+		DZA65_RS21960	0.64	+0.1
4,749,764	-		DZA65_RS21960	0.64	-0.0
4,749,764	-		DZA65_RS21960	0.64	-1.3
4,749,764	-		DZA65_RS21960	0.64	-1.1
4,749,764	-		DZA65_RS21960	0.64	-0.9
4,749,764	-		DZA65_RS21960	0.64	+2.0
4,749,766	+		DZA65_RS21960	0.65	-0.7
4,749,792	+		DZA65_RS21960	0.72	+1.5
4,749,792	+		DZA65_RS21960	0.72	-0.3
4,749,792	+		DZA65_RS21960	0.72	-1.0
4,749,792	+		DZA65_RS21960	0.72	+1.7
4,749,792	+		DZA65_RS21960	0.72	-0.4
4,749,792	+		DZA65_RS21960	0.72	-0.6
4,749,793	-		DZA65_RS21960	0.72	-1.0
4,749,793	-		DZA65_RS21960	0.72	-1.1
4,749,793	-		DZA65_RS21960	0.72	+0.5
4,749,793	-		DZA65_RS21960	0.72	+0.4
4,749,793	-		DZA65_RS21960	0.72	+0.4
4,749,793	-		DZA65_RS21960	0.72	-0.9
4,749,820	+		DZA65_RS21960	0.79	+0.6
4,749,820	+		DZA65_RS21960	0.79	+1.1
4,749,820	+		DZA65_RS21960	0.79	+1.6
4,749,820	+		DZA65_RS21960	0.79	+0.5
4,749,821	-		DZA65_RS21960	0.79	-1.3
4,749,821	-		DZA65_RS21960	0.79	+0.1
4,749,882	+				-1.6
4,749,882	+				-0.6
4,749,921	-				+0.7
4,749,944	+				-1.3
4,749,952	+				-0.1
4,749,952	+				+0.3
4,749,953	-				+0.2
4,749,953	-				-2.9
4,749,953	-				-1.1
4,749,976	-				-0.9
4,749,987	+				+0.3
4,749,987	+				-0.0
4,749,987	+				+0.2
4,749,988	-				+0.8
4,749,988	-				+0.1
4,749,988	-				-0.1
4,749,988	-				-2.1
4,749,988	-				+0.4
4,749,988	-				-1.6
4,750,017	+				-0.2
4,750,017	+				-0.7
4,750,018	-				-0.3
4,750,018	-				+0.1
4,750,310	+		DZA65_RS21965	0.22	-0.3
4,750,310	+		DZA65_RS21965	0.22	+0.5
4,750,311	-		DZA65_RS21965	0.22	+0.6
4,750,311	-		DZA65_RS21965	0.22	-0.5
4,750,352	+		DZA65_RS21965	0.25	+0.9
4,750,352	+		DZA65_RS21965	0.25	+0.0
4,750,352	+		DZA65_RS21965	0.25	+0.8
4,750,352	+		DZA65_RS21965	0.25	-1.4
4,750,352	+		DZA65_RS21965	0.25	-2.7
4,750,352	+		DZA65_RS21965	0.25	-1.0
4,750,353	-		DZA65_RS21965	0.25	-0.7
4,750,353	-		DZA65_RS21965	0.25	-0.3
4,750,353	-		DZA65_RS21965	0.25	-0.1
4,750,353	-		DZA65_RS21965	0.25	-0.3
4,750,353	-		DZA65_RS21965	0.25	-0.0
4,750,353	-		DZA65_RS21965	0.25	-0.3
4,750,353	-		DZA65_RS21965	0.25	+1.1
4,750,353	-		DZA65_RS21965	0.25	-0.3
4,750,353	-		DZA65_RS21965	0.25	-1.3
4,750,353	-		DZA65_RS21965	0.25	+0.5
4,750,353	-		DZA65_RS21965	0.25	-0.9
4,750,353	-		DZA65_RS21965	0.25	-0.8
4,750,353	-		DZA65_RS21965	0.25	-1.0
4,750,353	-		DZA65_RS21965	0.25	+3.7
4,750,353	-		DZA65_RS21965	0.25	-0.0
4,750,353	-		DZA65_RS21965	0.25	-2.1
4,750,353	-		DZA65_RS21965	0.25	+0.7
4,750,398	+		DZA65_RS21965	0.28	+0.1
4,750,398	+		DZA65_RS21965	0.28	-0.9
4,750,399	-		DZA65_RS21965	0.28	-0.5
4,750,399	-		DZA65_RS21965	0.28	+1.1
4,750,399	-		DZA65_RS21965	0.28	+0.5
4,750,399	-		DZA65_RS21965	0.28	-0.9
4,750,399	-		DZA65_RS21965	0.28	-1.1
4,750,401	-		DZA65_RS21965	0.28	-0.4
4,750,519	+		DZA65_RS21965	0.37	+0.3
4,750,519	+		DZA65_RS21965	0.37	-0.2
4,750,519	+		DZA65_RS21965	0.37	+0.2
4,750,519	+		DZA65_RS21965	0.37	+0.2
4,750,519	+		DZA65_RS21965	0.37	+1.7
4,750,519	+		DZA65_RS21965	0.37	+0.4
4,750,520	-		DZA65_RS21965	0.37	+0.6
4,750,520	-		DZA65_RS21965	0.37	-2.7
4,750,520	-		DZA65_RS21965	0.37	+0.2
4,750,520	-		DZA65_RS21965	0.37	+0.9
4,750,520	-		DZA65_RS21965	0.37	+1.2
4,750,520	-		DZA65_RS21965	0.37	-1.1
4,750,529	+		DZA65_RS21965	0.38	+0.1
4,750,530	-		DZA65_RS21965	0.38	+0.4
4,750,728	+		DZA65_RS21965	0.53	+0.4
4,750,728	+		DZA65_RS21965	0.53	-0.1
4,750,728	+		DZA65_RS21965	0.53	-0.9
4,750,728	+		DZA65_RS21965	0.53	+0.2
4,750,728	+		DZA65_RS21965	0.53	-0.3
4,750,728	+		DZA65_RS21965	0.53	-0.4
4,750,728	+		DZA65_RS21965	0.53	+0.5
4,750,729	-		DZA65_RS21965	0.53	-0.4
4,750,729	-		DZA65_RS21965	0.53	-2.3
4,750,729	-		DZA65_RS21965	0.53	+0.2
4,750,729	-				+0.7
4,750,729	-		DZA65_RS21965	0.53	-0.8
4,750,730	+		DZA65_RS21965	0.53	+1.7
4,750,730	+		DZA65_RS21965	0.53	+1.0
4,750,730	+		DZA65_RS21965	0.53	-2.1
4,750,730	+		DZA65_RS21965	0.53	+0.7
4,750,730	+		DZA65_RS21965	0.53	-0.0
4,750,730	+		DZA65_RS21965	0.53	-0.2
4,750,730	+		DZA65_RS21965	0.53	-1.7
4,750,730	+		DZA65_RS21965	0.53	-0.7
4,750,730	+		DZA65_RS21965	0.53	-1.7
4,750,730	+		DZA65_RS21965	0.53	-0.1
4,750,730	+		DZA65_RS21965	0.53	-1.2
4,750,730	+		DZA65_RS21965	0.53	-1.3
4,750,730	+		DZA65_RS21965	0.53	+0.7
4,750,730	+		DZA65_RS21965	0.53	+3.2
4,750,730	+		DZA65_RS21965	0.53	-0.1
4,750,730	+		DZA65_RS21965	0.53	-1.3
4,750,731	-		DZA65_RS21965	0.53	+0.7
4,750,731	-		DZA65_RS21965	0.53	-2.9
4,750,731	-		DZA65_RS21965	0.53	+0.5
4,750,731	-		DZA65_RS21965	0.53	+0.1
4,750,731	-		DZA65_RS21965	0.53	-0.1
4,750,731	-		DZA65_RS21965	0.53	-0.3
4,750,731	-		DZA65_RS21965	0.53	+0.7
4,750,731	-		DZA65_RS21965	0.53	-0.9
4,750,731	-		DZA65_RS21965	0.53	-0.0
4,750,731	-		DZA65_RS21965	0.53	-0.6
4,750,731	-		DZA65_RS21965	0.53	-0.7
4,750,731	-		DZA65_RS21965	0.53	+0.9
4,750,731	-		DZA65_RS21965	0.53	+1.1
4,750,731	-		DZA65_RS21965	0.53	-1.0
4,750,731	-		DZA65_RS21965	0.53	-1.9
4,750,731	-		DZA65_RS21965	0.53	+0.6
4,750,819	+		DZA65_RS21965	0.59	-0.9
4,750,819	+		DZA65_RS21965	0.59	-0.4
4,750,819	+		DZA65_RS21965	0.59	-0.1
4,750,819	+		DZA65_RS21965	0.59	-0.8
4,750,819	+		DZA65_RS21965	0.59	-0.0
4,750,820	-		DZA65_RS21965	0.59	+0.2
4,750,820	-		DZA65_RS21965	0.59	+1.0
4,750,820	-		DZA65_RS21965	0.59	+1.4