Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21620

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,673,406	+		DZA65_RS21615	0.57	-0.1
4,673,409	+		DZA65_RS21615	0.58	-0.3
4,673,519	+		DZA65_RS21615	0.66	+0.8
4,673,519	+		DZA65_RS21615	0.66	-1.6
4,673,978	+				-0.2
4,673,979	-				-0.1
4,674,145	+				+0.4
4,674,145	+				-0.9
4,674,145	+				-0.0
4,674,187	+				-1.3
4,674,187	+				+0.6
4,674,187	+				-0.5
4,674,187	+				-0.5
4,674,188	-				-0.7
4,674,188	-				-0.0
4,674,188	-				-0.5
4,674,188	-				-0.1
4,674,188	-				+0.6
4,674,240	-				+1.7
4,674,245	+				+1.1
4,674,246	-				+0.7
4,674,265	-				+0.7
4,674,272	+				-1.6
4,674,273	-				-1.0
4,674,286	+				-0.5
4,674,305	+				+0.7
4,674,305	+				+2.5
4,674,306	-				-0.6
4,674,306	-				+0.9
4,674,349	+				-2.3
4,674,349	+				-1.5
4,674,350	-				+0.4
4,674,375	+				-0.4
4,674,406	-				-0.9
4,674,411	+				+0.7
4,674,411	+				-0.9
4,674,411	+				-1.2
4,674,411	+				+1.4
4,674,411	+				-0.9
4,674,411	+				+0.9
4,674,411	+				+1.2
4,674,411	+				+1.1
4,674,412	-				-0.9
4,674,412	-				+0.0
4,674,412	-				+1.3
4,674,635	+		DZA65_RS21620	0.18	+0.1
4,674,635	+		DZA65_RS21620	0.18	-2.6
4,674,635	+		DZA65_RS21620	0.18	-0.3
4,674,635	+		DZA65_RS21620	0.18	+1.0
4,674,635	+		DZA65_RS21620	0.18	-0.0
4,674,635	+		DZA65_RS21620	0.18	-0.3
4,674,635	+		DZA65_RS21620	0.18	-1.0
4,674,636	-		DZA65_RS21620	0.18	-1.3
4,674,636	-		DZA65_RS21620	0.18	+0.7
4,674,636	-		DZA65_RS21620	0.18	+0.7
4,674,636	-		DZA65_RS21620	0.18	+0.7
4,674,636	-		DZA65_RS21620	0.18	+1.7
4,674,639	+		DZA65_RS21620	0.19	+1.3
4,674,639	+		DZA65_RS21620	0.19	-0.5
4,674,639	+		DZA65_RS21620	0.19	-1.4
4,674,639	+		DZA65_RS21620	0.19	-0.4
4,674,640	-		DZA65_RS21620	0.19	-0.9
4,674,640	-		DZA65_RS21620	0.19	-0.2
4,674,640	-		DZA65_RS21620	0.19	+0.4
4,674,788	+		DZA65_RS21620	0.25	+3.5
4,674,788	+		DZA65_RS21620	0.25	+0.0
4,674,788	+		DZA65_RS21620	0.25	+0.6
4,674,789	-		DZA65_RS21620	0.25	+0.7
4,674,789	-		DZA65_RS21620	0.25	-0.6
4,674,789	-		DZA65_RS21620	0.25	-0.4
4,674,789	-				+0.1
4,674,875	-		DZA65_RS21620	0.29	+0.3
4,674,875	-		DZA65_RS21620	0.29	-1.6
4,674,898	+		DZA65_RS21620	0.30	-0.6
4,674,898	+		DZA65_RS21620	0.30	-0.4
4,674,898	+		DZA65_RS21620	0.30	-0.1
4,674,899	-		DZA65_RS21620	0.30	+0.7
4,674,899	-		DZA65_RS21620	0.30	+0.5
4,674,899	-		DZA65_RS21620	0.30	+1.1
4,674,899	-		DZA65_RS21620	0.30	-0.1
4,674,899	-		DZA65_RS21620	0.30	+0.4
4,674,899	-		DZA65_RS21620	0.30	+1.3
4,674,982	+		DZA65_RS21620	0.34	+0.3
4,674,982	+		DZA65_RS21620	0.34	-0.5
4,674,982	+		DZA65_RS21620	0.34	-1.3
4,674,982	+		DZA65_RS21620	0.34	-2.1
4,674,982	+		DZA65_RS21620	0.34	+1.5
4,674,983	-		DZA65_RS21620	0.34	-2.3
4,674,983	-		DZA65_RS21620	0.34	+0.4
4,674,983	-		DZA65_RS21620	0.34	-1.1
4,674,983	-		DZA65_RS21620	0.34	+1.5
4,674,983	-		DZA65_RS21620	0.34	-0.9
4,674,983	-		DZA65_RS21620	0.34	-2.1
4,674,984	+		DZA65_RS21620	0.34	+0.9
4,674,984	+		DZA65_RS21620	0.34	+1.7
4,674,984	+				-1.6
4,674,984	+		DZA65_RS21620	0.34	-1.4
4,674,984	+		DZA65_RS21620	0.34	+1.2
4,674,984	+				+0.7
4,674,984	+		DZA65_RS21620	0.34	+0.9
4,674,984	+		DZA65_RS21620	0.34	-0.6
4,674,984	+		DZA65_RS21620	0.34	-2.2
4,674,984	+		DZA65_RS21620	0.34	+0.5
4,674,984	+		DZA65_RS21620	0.34	+4.5
4,674,984	+		DZA65_RS21620	0.34	+0.8
4,674,984	+		DZA65_RS21620	0.34	+1.0
4,674,985	-		DZA65_RS21620	0.34	+0.5
4,674,985	-		DZA65_RS21620	0.34	-0.1
4,674,985	-		DZA65_RS21620	0.34	-1.3
4,674,985	-		DZA65_RS21620	0.34	-1.6
4,674,985	-		DZA65_RS21620	0.34	+0.3
4,674,985	-		DZA65_RS21620	0.34	+1.6
4,674,985	-		DZA65_RS21620	0.34	+1.7
4,674,985	-		DZA65_RS21620	0.34	-0.7
4,674,985	-		DZA65_RS21620	0.34	+2.5
4,674,985	-		DZA65_RS21620	0.34	+1.6
4,674,985	-		DZA65_RS21620	0.34	-2.3
4,675,036	+		DZA65_RS21620	0.37	+0.5
4,675,036	+		DZA65_RS21620	0.37	-0.8
4,675,036	+		DZA65_RS21620	0.37	-1.2
4,675,036	+		DZA65_RS21620	0.37	+0.7
4,675,036	+		DZA65_RS21620	0.37	-2.1
4,675,036	+		DZA65_RS21620	0.37	-0.6
4,675,036	+		DZA65_RS21620	0.37	+1.7
4,675,036	+		DZA65_RS21620	0.37	-2.1
4,675,036	+		DZA65_RS21620	0.37	+0.3
4,675,036	+		DZA65_RS21620	0.37	-0.4
4,675,036	+		DZA65_RS21620	0.37	-1.1
4,675,036	+		DZA65_RS21620	0.37	+0.3
4,675,037	-		DZA65_RS21620	0.37	-0.0
4,675,037	-		DZA65_RS21620	0.37	-0.9
4,675,037	-		DZA65_RS21620	0.37	-1.7
4,675,037	-		DZA65_RS21620	0.37	-0.7
4,675,037	-		DZA65_RS21620	0.37	+0.9
4,675,037	-		DZA65_RS21620	0.37	-0.6
4,675,037	-		DZA65_RS21620	0.37	+0.2
4,675,037	-		DZA65_RS21620	0.37	-0.8
4,675,105	+		DZA65_RS21620	0.40	-2.3
4,675,105	+		DZA65_RS21620	0.40	+0.2
4,675,105	+		DZA65_RS21620	0.40	-0.9
4,675,106	-		DZA65_RS21620	0.40	-1.0
4,675,106	-		DZA65_RS21620	0.40	-0.3
4,675,106	-		DZA65_RS21620	0.40	-1.3
4,675,117	+		DZA65_RS21620	0.40	+1.0
4,675,132	+		DZA65_RS21620	0.41	-1.9
4,675,133	-		DZA65_RS21620	0.41	+1.1
4,675,133	-		DZA65_RS21620	0.41	+0.0
4,675,156	+		DZA65_RS21620	0.42	+0.0
4,675,209	+		DZA65_RS21620	0.45	+0.3
4,675,209	+		DZA65_RS21620	0.45	-1.3
4,675,209	+		DZA65_RS21620	0.45	-0.3
4,675,209	+		DZA65_RS21620	0.45	+0.1
4,675,210	-		DZA65_RS21620	0.45	-0.3
4,675,474	+		DZA65_RS21620	0.57	-0.3
4,675,474	+		DZA65_RS21620	0.57	+0.7
4,675,474	+		DZA65_RS21620	0.57	-0.2
4,675,474	+		DZA65_RS21620	0.57	+1.7
4,675,474	+		DZA65_RS21620	0.57	+0.1
4,675,474	+		DZA65_RS21620	0.57	-0.9
4,675,474	+		DZA65_RS21620	0.57	-2.3
4,675,474	+		DZA65_RS21620	0.57	+0.2
4,675,475	-		DZA65_RS21620	0.57	-0.1
4,675,475	-		DZA65_RS21620	0.57	-2.2
4,675,475	-		DZA65_RS21620	0.57	+0.4
4,675,475	-		DZA65_RS21620	0.57	-2.2
4,675,477	+		DZA65_RS21620	0.57	+1.9
4,675,477	+		DZA65_RS21620	0.57	-0.2
4,675,477	+		DZA65_RS21620	0.57	+1.2
4,675,477	+		DZA65_RS21620	0.57	+1.9
4,675,477	+		DZA65_RS21620	0.57	+0.2
4,675,478	-		DZA65_RS21620	0.57	+1.1
4,675,478	-		DZA65_RS21620	0.57	-1.0
4,675,478	-		DZA65_RS21620	0.57	-1.6
4,675,478	-		DZA65_RS21620	0.57	+0.0
4,675,480	+		DZA65_RS21620	0.57	+0.2
4,675,480	+		DZA65_RS21620	0.57	-1.2
4,675,480	+		DZA65_RS21620	0.57	-0.5
4,675,480	+		DZA65_RS21620	0.57	+0.6
4,675,480	+		DZA65_RS21620	0.57	+1.0
4,675,480	+		DZA65_RS21620	0.57	+0.1
4,675,480	+		DZA65_RS21620	0.57	+1.2
4,675,480	+		DZA65_RS21620	0.57	-0.5
4,675,481	-		DZA65_RS21620	0.57	+0.1
4,675,481	-		DZA65_RS21620	0.57	+0.7
4,675,481	-		DZA65_RS21620	0.57	+0.2
4,675,495	+		DZA65_RS21620	0.57	-0.3
4,675,495	+		DZA65_RS21620	0.57	-1.9
4,675,496	-		DZA65_RS21620	0.58	-0.5
4,675,539	+		DZA65_RS21620	0.59	-0.7
4,675,539	+		DZA65_RS21620	0.59	+1.2
4,675,540	-		DZA65_RS21620	0.60	+2.3
4,675,540	-		DZA65_RS21620	0.60	-0.1
4,675,895	-		DZA65_RS21620	0.76	+2.6
4,675,895	-		DZA65_RS21620	0.76	+2.7
4,675,989	-		DZA65_RS21620	0.80	+0.4
4,676,023	+		DZA65_RS21620	0.81	-1.0
4,676,023	+		DZA65_RS21620	0.81	-0.1
4,676,023	+		DZA65_RS21620	0.81	-0.5
4,676,023	+		DZA65_RS21620	0.81	+0.2
4,676,024	-		DZA65_RS21620	0.82	-0.1
4,676,024	-		DZA65_RS21620	0.82	+0.2
4,676,024	-		DZA65_RS21620	0.82	+0.5
4,676,224	+				-0.0
4,676,224	+				+1.1
4,676,224	+				-1.1
4,676,224	+				-2.3
4,676,224	+				-1.3
4,676,224	+				+0.6
4,676,224	+				+0.8
4,676,224	+				+0.5
4,676,224	+				-0.4
4,676,224	+				-1.7
4,676,224	+				+0.1
4,676,224	+				-0.1
4,676,224	+				-0.0
4,676,224	+				+0.7
4,676,224	+				-0.7
4,676,224	+				+0.1
4,676,224	+				-1.6
4,676,224	+				-1.0
4,676,224	+				-0.3
4,676,224	+				-0.6
4,676,224	+				-0.3
4,676,224	+				+1.1
4,676,224	+				-0.3
4,676,224	+				-1.1
4,676,225	-				-0.3
4,676,225	-				+0.2
4,676,225	-				-0.3
4,676,225	-				-0.9
4,676,225	-				-1.7
4,676,225	-				+0.9
4,676,225	-				+0.1
4,676,225	-				+0.6
4,676,225	-				-1.3
4,676,225	-				-1.1
4,676,225	-				-0.4
4,676,225	-				+0.4
4,676,225	-				-2.3
4,676,225	-				-0.6
4,676,225	-				+1.3
4,676,225	-				-2.1
4,676,225	-				-2.7
4,676,225	-				-0.5
4,676,225	-				-1.2
4,676,225	-				+2.2
4,676,225	-				+0.2
4,676,225	-				+0.7
4,676,273	-				-0.1
4,676,293	+				-0.9
4,676,293	+				-0.5
4,676,293	+				+0.5
4,676,293	+				-0.9
4,676,293	+				-0.1
4,676,293	+				+0.7
4,676,293	+				+0.7
4,676,293	+				-1.9
4,676,293	+				-0.3
4,676,293	+				-0.9
4,676,293	+				-0.6
4,676,293	+				+1.0
4,676,293	+				+1.3
4,676,293	+				-1.0
4,676,293	+				-2.2
4,676,293	+				-0.3
4,676,294	-				-0.5
4,676,294	-				+0.1
4,676,294	-				-1.4
4,676,294	-				+0.1
4,676,294	-				+0.0
4,676,294	-				+0.1
4,676,294	-				+0.8
4,676,294	-				-0.5
4,676,294	-				+0.5
4,676,294	-				-2.0
4,676,294	-				-0.1
4,676,294	-				+1.5
4,676,294	-				-0.1
4,676,294	-				-0.5
4,676,294	-				+0.3
4,676,294	-				+0.7
4,676,294	-				-1.8
4,676,315	-				+1.0
4,676,338	-				-0.0
4,676,376	+				+0.3
4,676,376	+				-0.1
4,676,376	+				-0.1
4,676,376	+				-1.3
4,676,388	+				+1.3
4,676,388	+				-1.6
4,676,389	-				-1.4
4,676,419	+				+1.3
4,676,419	+				-0.6
4,676,419	+				-0.3
4,676,419	+				+0.4
4,676,419	+				+0.3
4,676,419	+				-0.0
4,676,419	+				-0.6
4,676,419	+				+0.4
4,676,420	-				-0.2
4,676,420	-				+0.1
4,676,420	-				-1.3
4,676,420	-				-2.3
4,676,420	-				+1.4
4,676,420	-				-0.3
4,676,420	-				-0.1
4,676,420	-				+0.6
4,676,420	-				+0.0
4,676,422	+				-1.3
4,676,429	-				+0.1
4,676,429	-				+0.6
4,676,429	-				-0.0
4,676,438	+				-0.1
4,676,439	-				-0.5
4,676,440	-				+0.2
4,676,508	+		DZA65_RS21625	0.14	+0.2
4,676,575	-		DZA65_RS21625	0.23	-0.3
4,676,617	+		DZA65_RS21625	0.28	-1.6
4,676,618	-		DZA65_RS21625	0.28	-0.0
4,676,722	+		DZA65_RS21625	0.42	-0.3
4,676,722	+		DZA65_RS21625	0.42	+1.2
4,676,731	+		DZA65_RS21625	0.43	-0.3
4,676,731	+		DZA65_RS21625	0.43	+0.9
4,676,731	+		DZA65_RS21625	0.43	-0.9
4,676,731	+		DZA65_RS21625	0.43	-0.3
4,676,731	+		DZA65_RS21625	0.43	+0.2
4,676,732	-		DZA65_RS21625	0.43	+0.8
4,676,732	-		DZA65_RS21625	0.43	-2.3
4,676,732	-		DZA65_RS21625	0.43	+2.3
4,676,732	-		DZA65_RS21625	0.43	-0.3
4,676,732	-		DZA65_RS21625	0.43	+0.5
4,676,799	+		DZA65_RS21625	0.52	-1.3
4,676,799	+		DZA65_RS21625	0.52	+0.3
4,676,800	-		DZA65_RS21625	0.52	-0.3
4,676,800	-		DZA65_RS21625	0.52	-0.1
4,676,814	+		DZA65_RS21625	0.53	-0.3
4,676,814	+		DZA65_RS21625	0.53	+1.7
4,676,814	+		DZA65_RS21625	0.53	+0.7
4,676,814	+		DZA65_RS21625	0.53	+0.7
4,676,814	+		DZA65_RS21625	0.53	-0.6
4,676,814	+		DZA65_RS21625	0.53	+1.1
4,676,814	+		DZA65_RS21625	0.53	+0.5
4,676,815	-		DZA65_RS21625	0.54	+1.8
4,676,815	-		DZA65_RS21625	0.54	-0.0
4,676,815	-		DZA65_RS21625	0.54	-0.4
4,676,815	-		DZA65_RS21625	0.54	-0.7
4,676,815	-		DZA65_RS21625	0.54	+0.8
4,676,815	-		DZA65_RS21625	0.54	+0.5
4,676,950	+		DZA65_RS21625	0.71	+0.1
4,676,950	+		DZA65_RS21625	0.71	-0.4
4,676,961	+		DZA65_RS21625	0.72	-2.1
4,676,962	-		DZA65_RS21625	0.73	+1.6
4,676,997	+		DZA65_RS21625	0.77	+0.1
4,676,998	-		DZA65_RS21625	0.77	+0.4
4,677,046	+		DZA65_RS21625	0.83	-1.3
4,677,046	+		DZA65_RS21625	0.83	-1.9
4,677,046	+		DZA65_RS21625	0.83	+2.0
4,677,046	+		DZA65_RS21625	0.83	+1.2
4,677,046	+		DZA65_RS21625	0.83	+0.6
4,677,046	+		DZA65_RS21625	0.83	-0.7
4,677,047	-		DZA65_RS21625	0.84	+0.5
4,677,047	-		DZA65_RS21625	0.84	-2.1
4,677,047	-		DZA65_RS21625	0.84	-0.1
4,677,047	-		DZA65_RS21625	0.84	+0.1
4,677,047	-		DZA65_RS21625	0.84	-1.0
4,677,047	-		DZA65_RS21625	0.84	-2.0
4,677,047	-		DZA65_RS21625	0.84	-0.5
4,677,047	-		DZA65_RS21625	0.84	+2.0
4,677,047	-		DZA65_RS21625	0.84	+0.3
4,677,102	+				-1.2
4,677,253	+				+1.3
4,677,253	+				-1.2
4,677,254	-				-1.1
4,677,254	-				-0.1
4,677,299	+		DZA65_RS21630	0.18	+1.2
4,677,299	+		DZA65_RS21630	0.18	-0.9
4,677,299	+		DZA65_RS21630	0.18	-0.3
4,677,300	-		DZA65_RS21630	0.19	+1.0
4,677,300	-		DZA65_RS21630	0.19	+0.7
4,677,300	-		DZA65_RS21630	0.19	-0.1
4,677,407	-		DZA65_RS21630	0.42	+0.5