Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20940

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,526,755	+		DZA65_RS20935	0.51	+0.5
4,526,755	+		DZA65_RS20935	0.51	-0.3
4,526,755	+		DZA65_RS20935	0.51	+0.7
4,526,755	+		DZA65_RS20935	0.51	+1.0
4,526,756	-		DZA65_RS20935	0.51	-0.7
4,526,756	-		DZA65_RS20935	0.51	-0.2
4,526,756	-		DZA65_RS20935	0.51	+0.1
4,526,756	-		DZA65_RS20935	0.51	+0.3
4,526,757	+		DZA65_RS20935	0.51	-0.5
4,526,757	+		DZA65_RS20935	0.51	+0.1
4,526,757	+		DZA65_RS20935	0.51	+0.7
4,526,757	+		DZA65_RS20935	0.51	+1.6
4,526,758	-		DZA65_RS20935	0.51	-0.3
4,526,779	+		DZA65_RS20935	0.53	+0.5
4,526,807	+		DZA65_RS20935	0.54	+1.2
4,526,807	+		DZA65_RS20935	0.54	-0.2
4,526,807	+		DZA65_RS20935	0.54	+0.1
4,526,807	+		DZA65_RS20935	0.54	-0.0
4,526,807	+		DZA65_RS20935	0.54	-1.1
4,526,807	+		DZA65_RS20935	0.54	-0.1
4,526,807	+		DZA65_RS20935	0.54	-1.9
4,526,807	+		DZA65_RS20935	0.54	+0.5
4,526,808	-		DZA65_RS20935	0.54	-1.3
4,526,808	-		DZA65_RS20935	0.54	-1.3
4,526,808	-		DZA65_RS20935	0.54	+1.0
4,526,808	-		DZA65_RS20935	0.54	-0.5
4,526,819	+		DZA65_RS20935	0.55	+0.7
4,526,819	+		DZA65_RS20935	0.55	-0.3
4,526,819	+		DZA65_RS20935	0.55	+0.4
4,526,820	-		DZA65_RS20935	0.55	+0.2
4,526,820	-		DZA65_RS20935	0.55	-2.1
4,526,877	+		DZA65_RS20935	0.59	-2.6
4,526,877	+		DZA65_RS20935	0.59	-0.2
4,526,877	+		DZA65_RS20935	0.59	+0.2
4,526,877	+		DZA65_RS20935	0.59	-1.6
4,526,877	+		DZA65_RS20935	0.59	+0.3
4,526,877	+		DZA65_RS20935	0.59	+0.7
4,526,877	+		DZA65_RS20935	0.59	-0.9
4,526,877	+		DZA65_RS20935	0.59	+0.9
4,526,877	+		DZA65_RS20935	0.59	+1.0
4,526,878	-		DZA65_RS20935	0.59	+0.4
4,526,878	-		DZA65_RS20935	0.59	+0.7
4,526,878	-		DZA65_RS20935	0.59	+0.7
4,526,878	-		DZA65_RS20935	0.59	+0.7
4,526,878	-		DZA65_RS20935	0.59	+1.8
4,526,896	+		DZA65_RS20935	0.60	-1.2
4,526,896	+		DZA65_RS20935	0.60	+0.7
4,526,896	+		DZA65_RS20935	0.60	-1.7
4,526,896	+		DZA65_RS20935	0.60	-0.9
4,526,896	+		DZA65_RS20935	0.60	+0.7
4,526,897	-		DZA65_RS20935	0.60	-0.3
4,526,897	-		DZA65_RS20935	0.60	+0.7
4,526,897	-		DZA65_RS20935	0.60	+1.9
4,526,897	-				+1.7
4,526,897	-		DZA65_RS20935	0.60	+0.3
4,526,908	+		DZA65_RS20935	0.60	+0.2
4,526,908	+		DZA65_RS20935	0.60	+0.1
4,526,909	-		DZA65_RS20935	0.60	+2.3
4,526,909	-		DZA65_RS20935	0.60	-0.8
4,526,909	-		DZA65_RS20935	0.60	+0.3
4,526,909	-		DZA65_RS20935	0.60	-1.3
4,526,915	+		DZA65_RS20935	0.61	+2.3
4,526,916	-		DZA65_RS20935	0.61	-2.1
4,526,989	+		DZA65_RS20935	0.65	+0.1
4,526,990	-		DZA65_RS20935	0.65	-0.1
4,526,990	-		DZA65_RS20935	0.65	-1.7
4,527,028	+		DZA65_RS20935	0.67	-0.3
4,527,029	-		DZA65_RS20935	0.68	+0.6
4,527,029	-		DZA65_RS20935	0.68	-0.7
4,527,047	+		DZA65_RS20935	0.69	-0.3
4,527,047	+		DZA65_RS20935	0.69	-0.5
4,527,048	-		DZA65_RS20935	0.69	+0.6
4,527,048	-		DZA65_RS20935	0.69	+0.2
4,527,059	+		DZA65_RS20935	0.69	-0.6
4,527,059	+		DZA65_RS20935	0.69	+1.0
4,527,059	+				+0.7
4,527,059	+		DZA65_RS20935	0.69	+2.3
4,527,059	+		DZA65_RS20935	0.69	+0.5
4,527,059	+		DZA65_RS20935	0.69	-2.1
4,527,059	+		DZA65_RS20935	0.69	-1.9
4,527,059	+		DZA65_RS20935	0.69	-0.7
4,527,060	-		DZA65_RS20935	0.69	+2.0
4,527,060	-		DZA65_RS20935	0.69	-0.0
4,527,060	-		DZA65_RS20935	0.69	-0.4
4,527,060	-		DZA65_RS20935	0.69	-0.4
4,527,060	-		DZA65_RS20935	0.69	-1.6
4,527,060	-		DZA65_RS20935	0.69	+0.5
4,527,060	-		DZA65_RS20935	0.69	-1.2
4,527,064	+		DZA65_RS20935	0.70	+1.5
4,527,188	+		DZA65_RS20935	0.77	-0.9
4,527,188	+		DZA65_RS20935	0.77	+0.7
4,527,188	+		DZA65_RS20935	0.77	+0.6
4,527,189	-		DZA65_RS20935	0.77	-0.2
4,527,189	-		DZA65_RS20935	0.77	+0.2
4,527,189	-		DZA65_RS20935	0.77	-0.1
4,527,189	-		DZA65_RS20935	0.77	+1.0
4,527,198	+				+0.7
4,527,296	-		DZA65_RS20935	0.83	+0.3
4,527,304	+		DZA65_RS20935	0.84	+1.7
4,527,362	+		DZA65_RS20935	0.87	-0.1
4,527,423	+				+0.1
4,527,423	+				+0.2
4,527,423	+				-0.9
4,527,423	+				-1.6
4,527,424	-				+0.0
4,527,424	-				+0.8
4,527,424	-				-0.8
4,527,536	+				+2.9
4,527,610	+				-0.3
4,527,611	-				+1.3
4,527,611	-				+0.7
4,527,618	+				+0.8
4,527,618	+				-1.7
4,527,618	+				-0.7
4,527,618	+				+2.3
4,527,618	+				-2.1
4,527,618	+				-0.3
4,527,618	+				+1.3
4,527,618	+				-0.9
4,527,618	+				-0.2
4,527,618	+				-0.9
4,527,619	-				+0.9
4,527,619	-				+0.4
4,527,619	-				-0.5
4,527,619	-				+1.1
4,527,619	-				+0.2
4,527,619	-				-1.7
4,527,620	+				-0.3
4,527,625	+				+1.5
4,527,625	+				-1.0
4,527,626	-				+1.1
4,527,626	-				-1.9
4,527,630	-				+1.7
4,527,679	-				+0.3
4,527,724	+				+1.1
4,527,725	-				-0.0
4,527,725	-				-0.7
4,527,725	-				-0.2
4,527,725	-				-1.1
4,527,725	-				-1.3
4,527,749	-				+1.8
4,527,749	-				+1.1
4,527,749	-				+0.1
4,527,756	+				-0.3
4,527,757	-				-0.0
4,527,823	+		DZA65_RS20940	0.36	+0.2
4,527,824	-		DZA65_RS20940	0.36	-0.1
4,527,840	-		DZA65_RS20940	0.44	-0.9
4,527,914	+		DZA65_RS20940	0.78	+0.5
4,527,915	-		DZA65_RS20940	0.79	+2.5
4,527,915	-		DZA65_RS20940	0.79	+0.4
4,527,934	-		DZA65_RS20940	0.88	-1.6
4,527,950	+				-0.2
4,527,950	+				+0.3
4,527,951	-				+1.0
4,527,951	-				-0.2
4,527,951	-				+0.5
4,527,954	-				+1.7
4,527,959	+				-1.9
4,527,959	+				+0.1
4,527,959	+				-0.0
4,527,959	+				-0.3
4,527,959	+				-1.2
4,527,959	+				+1.5
4,527,959	+				-0.6
4,527,959	+				-1.9
4,527,959	+				-0.9
4,527,959	+				+0.5
4,527,959	+				-0.0
4,527,959	+				+0.5
4,527,959	+				-1.0
4,527,959	+				-0.5
4,527,959	+				+0.4
4,527,960	-				-0.2
4,527,960	-				-1.6
4,527,960	-				-1.0
4,527,960	-				+0.0
4,527,960	-				-0.1
4,527,960	-				+1.5
4,527,960	-				-0.3
4,527,962	+				+0.5
4,527,962	+				+1.3
4,527,962	+				-2.1
4,527,962	+				+2.7
4,527,962	+				+1.6
4,527,962	+				-0.3
4,527,962	+				+2.6
4,527,962	+				+1.7
4,527,962	+				+0.3
4,527,962	+				-0.6
4,527,962	+				-0.3
4,527,962	+				-0.9
4,527,962	+				-1.7
4,527,962	+				+0.0
4,527,962	+				+1.8
4,527,963	-				+0.7
4,527,963	-				-0.7
4,527,963	-				+0.1
4,527,963	-				-0.5
4,527,965	+				-1.0
4,527,965	+				+1.0
4,527,966	-				+0.1
4,527,966	-				+0.4
4,528,021	+				-0.6
4,528,021	+				-0.7
4,528,021	+				+1.0
4,528,022	-				-0.7
4,528,022	-				+1.3
4,528,022	-				-0.4
4,528,022	-				-0.9
4,528,022	-				-0.4
4,528,025	+				+1.6
4,528,025	+				+2.4
4,528,025	+				+2.3
4,528,025	+				-1.3
4,528,025	+				-2.1
4,528,026	-				+0.4
4,528,026	-				-0.9
4,528,026	-				-0.8
4,528,093	-				+0.1
4,528,093	-				+0.6
4,528,093	-				+0.1
4,528,096	-				+0.7
4,528,096	-				-0.2
4,528,096	-				-1.6
4,528,096	-				-0.6
4,528,105	+				+0.1
4,528,106	-				-0.0
4,528,106	-				+0.3
4,528,106	-				+0.2
4,528,106	-				-2.7
4,528,106	-				-0.2
4,528,109	+				-0.3
4,528,110	-				+1.5
4,528,110	-				+1.1
4,528,110	-				-1.1
4,528,110	-				+0.5
4,528,113	+				+2.3
4,528,114	-				-0.0
4,528,142	+				-0.5
4,528,143	-				+0.1
4,528,173	+				+0.2
4,528,173	+				+0.1
4,528,174	-				-1.9
4,528,174	-				-0.5
4,528,174	-				+0.5
4,528,177	+				+1.0
4,528,178	-				+0.7
4,528,178	-				-2.3
4,528,178	-				+0.7
4,528,192	+				-1.0
4,528,208	+				+0.2
4,528,208	+				+0.3
4,528,212	-				+1.2
4,528,246	-				+0.1
4,528,290	+				+0.4
4,528,290	+				-0.7
4,528,291	-				+0.6
4,528,291	-				-0.4
4,528,291	-				+0.1
4,528,291	-				+4.3
4,528,325	-				+1.7
4,528,325	-				+1.1
4,528,345	+				+1.3
4,528,345	+				+1.0
4,528,345	+				-0.3
4,528,345	+				-1.2
4,528,346	-				+0.2
4,528,357	+				-0.6
4,528,357	+				-2.3
4,528,357	+				-0.3
4,528,357	+				+0.2
4,528,357	+				-1.3
4,528,357	+				+0.5
4,528,357	+				+2.5
4,528,357	+				+0.4
4,528,358	-				+0.7
4,528,358	-				-0.1
4,528,358	-				+0.6
4,528,358	-				+1.0
4,528,358	-				-0.6
4,528,359	+				-0.7
4,528,359	+				-0.9
4,528,359	+				+0.7
4,528,359	+				+0.5
4,528,359	+				+0.7
4,528,359	+				-0.1
4,528,359	+				+0.6
4,528,359	+				+1.1
4,528,359	+				+1.5
4,528,359	+				+2.0
4,528,359	+				+0.2
4,528,359	+				+0.1
4,528,359	+				+1.0
4,528,359	+				+0.7
4,528,359	+				-1.6
4,528,359	+				-0.8
4,528,359	+				-0.3
4,528,359	+				-0.4
4,528,359	+				+0.7
4,528,359	+				+0.4
4,528,359	+				+0.5
4,528,359	+				+0.1
4,528,359	+				-1.5
4,528,359	+				-0.6
4,528,359	+				-0.3
4,528,359	+				+0.9
4,528,359	+				+0.8
4,528,359	+				+1.0
4,528,359	+				-0.3
4,528,359	+				+1.9
4,528,359	+				-1.1
4,528,359	+				-2.1
4,528,359	+				+0.8
4,528,360	-				+0.1
4,528,360	-				+0.9
4,528,360	-				-1.1
4,528,360	-				-0.7
4,528,360	-				+0.8
4,528,360	-				+1.0
4,528,360	-				+1.4
4,528,360	-				+2.1
4,528,360	-				+0.3
4,528,360	-				-0.2
4,528,360	-				+0.2
4,528,360	-				+0.4
4,528,360	-				-0.2
4,528,360	-				-0.7
4,528,360	-				-1.3
4,528,360	-				-0.9
4,528,360	-				+0.5
4,528,360	-				-1.3
4,528,360	-				+1.5
4,528,360	-				+0.0
4,528,360	-				-0.6
4,528,360	-				-1.5
4,528,360	-				-1.1
4,528,360	-				+0.5
4,528,360	-				+0.1
4,528,360	-				-0.9
4,528,360	-				-1.9
4,528,360	-				+1.6
4,528,530	-		DZA65_RS20945	0.40	-0.3
4,528,612	+		DZA65_RS20945	0.58	+2.3
4,528,612	+		DZA65_RS20945	0.58	+0.5
4,528,612	+		DZA65_RS20945	0.58	+0.2
4,528,612	+		DZA65_RS20945	0.58	-2.9
4,528,612	+		DZA65_RS20945	0.58	-0.9
4,528,612	+		DZA65_RS20945	0.58	+1.9
4,528,613	-		DZA65_RS20945	0.59	+1.0
4,528,613	-		DZA65_RS20945	0.59	+1.4
4,528,613	-		DZA65_RS20945	0.59	-0.5
4,528,613	-		DZA65_RS20945	0.59	-0.9
4,528,613	-				-0.9
4,528,613	-		DZA65_RS20945	0.59	-0.4
4,528,613	-		DZA65_RS20945	0.59	-2.1
4,528,613	-		DZA65_RS20945	0.59	+0.9
4,528,618	+		DZA65_RS20945	0.60	-0.9
4,528,618	+		DZA65_RS20945	0.60	+0.3
4,528,618	+		DZA65_RS20945	0.60	-0.9
4,528,618	+		DZA65_RS20945	0.60	-0.9
4,528,618	+		DZA65_RS20945	0.60	+2.1
4,528,618	+		DZA65_RS20945	0.60	+0.3
4,528,618	+		DZA65_RS20945	0.60	+0.6
4,528,618	+		DZA65_RS20945	0.60	-0.7
4,528,618	+		DZA65_RS20945	0.60	-0.5
4,528,618	+		DZA65_RS20945	0.60	-0.1
4,528,618	+		DZA65_RS20945	0.60	-1.1
4,528,618	+		DZA65_RS20945	0.60	+0.8
4,528,619	-		DZA65_RS20945	0.60	-0.1
4,528,619	-		DZA65_RS20945	0.60	-1.7
4,528,619	-		DZA65_RS20945	0.60	+0.0
4,528,619	-		DZA65_RS20945	0.60	-0.5
4,528,619	-		DZA65_RS20945	0.60	-1.6
4,528,619	-		DZA65_RS20945	0.60	+0.3
4,528,619	-		DZA65_RS20945	0.60	-0.4
4,528,619	-		DZA65_RS20945	0.60	-0.3
4,528,619	-		DZA65_RS20945	0.60	-0.0
4,528,619	-		DZA65_RS20945	0.60	-0.3
4,528,649	+		DZA65_RS20945	0.67	-0.6
4,528,721	-		DZA65_RS20945	0.83	-0.7
4,528,731	+		DZA65_RS20945	0.86	-3.0
4,528,731	+		DZA65_RS20945	0.86	-1.6
4,528,732	-		DZA65_RS20945	0.86	+0.1
4,528,732	-		DZA65_RS20945	0.86	-1.0
4,528,922	+				+0.5
4,528,922	+				+1.1
4,528,923	-				+1.4
4,528,923	-				+0.4
4,528,935	+				+0.7
4,528,936	-				+0.7