Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20605

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,444,551	-		DZA65_RS20600	0.41	-0.9
4,444,665	+		DZA65_RS20600	0.50	+0.7
4,444,665	+		DZA65_RS20600	0.50	+0.8
4,444,665	+		DZA65_RS20600	0.50	-0.0
4,444,665	+		DZA65_RS20600	0.50	+2.2
4,444,665	+		DZA65_RS20600	0.50	-0.6
4,444,665	+		DZA65_RS20600	0.50	+0.1
4,444,666	-		DZA65_RS20600	0.50	-0.9
4,444,666	-		DZA65_RS20600	0.50	-1.7
4,444,666	-		DZA65_RS20600	0.50	-0.3
4,444,666	-		DZA65_RS20600	0.50	-0.8
4,444,666	-		DZA65_RS20600	0.50	-0.6
4,444,666	-		DZA65_RS20600	0.50	-0.4
4,444,666	-		DZA65_RS20600	0.50	+0.1
4,444,666	-		DZA65_RS20600	0.50	-1.6
4,444,667	+		DZA65_RS20600	0.50	-0.4
4,444,667	+		DZA65_RS20600	0.50	-0.2
4,444,668	-		DZA65_RS20600	0.50	-0.1
4,444,668	-				+1.5
4,444,668	-		DZA65_RS20600	0.50	+1.5
4,444,716	-		DZA65_RS20600	0.54	-1.1
4,444,716	-		DZA65_RS20600	0.54	-0.6
4,444,716	-		DZA65_RS20600	0.54	+0.1
4,444,868	+		DZA65_RS20600	0.65	-0.3
4,444,868	+		DZA65_RS20600	0.65	-1.6
4,444,869	-		DZA65_RS20600	0.65	+0.7
4,445,000	+		DZA65_RS20600	0.74	-0.9
4,445,000	+		DZA65_RS20600	0.74	-1.6
4,445,001	-		DZA65_RS20600	0.74	+0.1
4,445,001	-		DZA65_RS20600	0.74	-0.3
4,445,001	-		DZA65_RS20600	0.74	-0.6
4,445,001	-		DZA65_RS20600	0.74	-2.1
4,445,060	+		DZA65_RS20600	0.79	-0.6
4,445,060	+		DZA65_RS20600	0.79	-2.5
4,445,060	+		DZA65_RS20600	0.79	-0.2
4,445,061	-		DZA65_RS20600	0.79	+0.0
4,445,061	-		DZA65_RS20600	0.79	-0.6
4,445,061	-		DZA65_RS20600	0.79	-0.2
4,445,061	-		DZA65_RS20600	0.79	+0.7
4,445,061	-		DZA65_RS20600	0.79	-1.9
4,445,088	+		DZA65_RS20600	0.81	+1.9
4,445,088	+		DZA65_RS20600	0.81	-1.9
4,445,088	+		DZA65_RS20600	0.81	+0.5
4,445,088	+		DZA65_RS20600	0.81	+0.2
4,445,088	+		DZA65_RS20600	0.81	+0.9
4,445,088	+		DZA65_RS20600	0.81	-0.5
4,445,088	+		DZA65_RS20600	0.81	+1.4
4,445,088	+		DZA65_RS20600	0.81	-0.5
4,445,088	+		DZA65_RS20600	0.81	-1.6
4,445,088	+		DZA65_RS20600	0.81	+0.5
4,445,088	+		DZA65_RS20600	0.81	+0.3
4,445,088	+		DZA65_RS20600	0.81	-0.2
4,445,089	-		DZA65_RS20600	0.81	+1.0
4,445,089	-		DZA65_RS20600	0.81	+0.6
4,445,089	-		DZA65_RS20600	0.81	+0.5
4,445,089	-		DZA65_RS20600	0.81	-1.3
4,445,089	-		DZA65_RS20600	0.81	+1.2
4,445,089	-		DZA65_RS20600	0.81	-0.1
4,445,089	-		DZA65_RS20600	0.81	+1.3
4,445,089	-		DZA65_RS20600	0.81	-1.9
4,445,089	-		DZA65_RS20600	0.81	-0.9
4,445,089	-		DZA65_RS20600	0.81	+1.4
4,445,089	-		DZA65_RS20600	0.81	+1.0
4,445,089	-		DZA65_RS20600	0.81	-0.4
4,445,089	-		DZA65_RS20600	0.81	+0.2
4,445,089	-		DZA65_RS20600	0.81	+1.8
4,445,089	-		DZA65_RS20600	0.81	+0.1
4,445,089	-		DZA65_RS20600	0.81	+0.5
4,445,089	-		DZA65_RS20600	0.81	+0.2
4,445,099	+		DZA65_RS20600	0.82	-2.6
4,445,099	+		DZA65_RS20600	0.82	-0.6
4,445,099	+		DZA65_RS20600	0.82	+0.4
4,445,099	+		DZA65_RS20600	0.82	+0.7
4,445,099	+		DZA65_RS20600	0.82	-1.9
4,445,099	+		DZA65_RS20600	0.82	-0.7
4,445,099	+		DZA65_RS20600	0.82	+0.3
4,445,100	-		DZA65_RS20600	0.82	-2.6
4,445,100	-		DZA65_RS20600	0.82	-0.8
4,445,100	-		DZA65_RS20600	0.82	-1.5
4,445,100	-		DZA65_RS20600	0.82	+2.0
4,445,100	-		DZA65_RS20600	0.82	+0.5
4,445,100	-		DZA65_RS20600	0.82	-1.6
4,445,127	-		DZA65_RS20600	0.84	+0.6
4,445,219	+				-1.9
4,445,219	+				-0.8
4,445,220	-				-0.9
4,445,283	+				-0.3
4,445,283	+				-0.1
4,445,283	+				+0.2
4,445,283	+				-1.3
4,445,283	+				+1.1
4,445,283	+				+1.7
4,445,283	+				+0.4
4,445,283	+				+0.5
4,445,283	+				-1.9
4,445,284	-				-0.1
4,445,284	-				+1.1
4,445,284	-				-2.1
4,445,284	-				-0.4
4,445,284	-				+1.4
4,445,284	-				-0.0
4,445,438	+				+0.7
4,445,438	+				+0.3
4,445,438	+				-0.3
4,445,438	+				-2.0
4,445,438	+				-2.0
4,445,438	+				-1.1
4,445,438	+				+0.3
4,445,439	-				-1.3
4,445,439	-				-0.2
4,445,467	-				+1.0
4,445,506	+				+0.7
4,445,507	-				+0.7
4,445,578	-				-0.0
4,445,578	-				-0.8
4,445,596	-				+1.0
4,445,680	+		DZA65_RS20605	0.22	-0.0
4,445,680	+		DZA65_RS20605	0.22	+0.3
4,445,680	+		DZA65_RS20605	0.22	+0.3
4,445,680	+		DZA65_RS20605	0.22	+0.1
4,445,681	-		DZA65_RS20605	0.22	-1.4
4,445,681	-		DZA65_RS20605	0.22	-1.0
4,445,681	-		DZA65_RS20605	0.22	+0.2
4,445,681	-		DZA65_RS20605	0.22	-2.1
4,445,681	-		DZA65_RS20605	0.22	+0.1
4,445,681	-		DZA65_RS20605	0.22	-2.6
4,445,681	-		DZA65_RS20605	0.22	-0.5
4,445,681	-		DZA65_RS20605	0.22	-1.0
4,445,681	-		DZA65_RS20605	0.22	-1.8
4,445,681	-		DZA65_RS20605	0.22	-0.8
4,445,681	-		DZA65_RS20605	0.22	-1.5
4,445,785	+		DZA65_RS20605	0.40	-3.1
4,445,785	+		DZA65_RS20605	0.40	+0.4
4,445,785	+		DZA65_RS20605	0.40	-0.2
4,445,785	+		DZA65_RS20605	0.40	-1.8
4,445,786	-		DZA65_RS20605	0.40	-1.0
4,445,786	-		DZA65_RS20605	0.40	-0.9
4,445,786	-		DZA65_RS20605	0.40	-1.2
4,445,786	-		DZA65_RS20605	0.40	-1.9
4,445,866	+		DZA65_RS20605	0.54	+0.0
4,445,866	+		DZA65_RS20605	0.54	-1.1
4,445,866	+		DZA65_RS20605	0.54	-0.2
4,445,866	+		DZA65_RS20605	0.54	-1.6
4,445,867	-		DZA65_RS20605	0.54	+0.1
4,445,867	-		DZA65_RS20605	0.54	-1.3
4,445,867	-		DZA65_RS20605	0.54	-2.1
4,445,875	+		DZA65_RS20605	0.55	-1.9
4,445,876	-		DZA65_RS20605	0.56	+0.7
4,445,887	+		DZA65_RS20605	0.57	-2.5
4,445,887	+		DZA65_RS20605	0.57	-0.5
4,445,887	+		DZA65_RS20605	0.57	+1.4
4,445,887	+		DZA65_RS20605	0.57	-2.3
4,445,887	+		DZA65_RS20605	0.57	+0.7
4,445,887	+		DZA65_RS20605	0.57	-0.3
4,445,887	+		DZA65_RS20605	0.57	-0.5
4,445,887	+		DZA65_RS20605	0.57	-1.2
4,445,888	-		DZA65_RS20605	0.58	-2.1
4,445,888	-		DZA65_RS20605	0.58	-0.3
4,445,888	-		DZA65_RS20605	0.58	-1.3
4,445,888	-		DZA65_RS20605	0.58	-1.2
4,445,888	-		DZA65_RS20605	0.58	-0.9
4,445,888	-		DZA65_RS20605	0.58	+0.5
4,445,888	-		DZA65_RS20605	0.58	-1.8
4,445,888	-		DZA65_RS20605	0.58	-0.6
4,445,888	-		DZA65_RS20605	0.58	-2.8
4,445,924	+		DZA65_RS20605	0.64	-0.6
4,445,924	+		DZA65_RS20605	0.64	-0.9
4,445,924	+		DZA65_RS20605	0.64	-0.5
4,445,924	+		DZA65_RS20605	0.64	-1.1
4,445,924	+		DZA65_RS20605	0.64	-2.4
4,445,924	+		DZA65_RS20605	0.64	+0.2
4,445,925	-		DZA65_RS20605	0.64	+0.0
4,445,925	-		DZA65_RS20605	0.64	+0.2
4,445,933	+		DZA65_RS20605	0.65	+0.1
4,445,934	-		DZA65_RS20605	0.65	-0.2
4,445,934	-		DZA65_RS20605	0.65	-1.3
4,446,035	+		DZA65_RS20605	0.83	+0.3
4,446,035	+		DZA65_RS20605	0.83	-0.4
4,446,036	-		DZA65_RS20605	0.83	-0.7
4,446,073	+		DZA65_RS20605	0.89	-0.9
4,446,073	+		DZA65_RS20605	0.89	-0.3
4,446,073	+		DZA65_RS20605	0.89	+0.4
4,446,074	-		DZA65_RS20605	0.89	+0.0
4,446,074	-		DZA65_RS20605	0.89	+0.2
4,446,074	-		DZA65_RS20605	0.89	-0.9
4,446,074	-		DZA65_RS20605	0.89	-0.8
4,446,087	+				-1.1
4,446,087	+				-1.4
4,446,088	-				-1.4
4,446,088	-				-1.1
4,446,088	-				-0.6
4,446,091	+				+0.9
4,446,091	+				+0.9
4,446,091	+				-2.1
4,446,091	+				-1.6
4,446,091	+				-0.3
4,446,091	+				-0.1
4,446,091	+				+0.1
4,446,091	+				-0.7
4,446,091	+				-1.3
4,446,091	+				+0.8
4,446,091	+				-1.1
4,446,091	+				-0.3
4,446,091	+				-0.6
4,446,091	+				-0.5
4,446,091	+				-1.3
4,446,091	+				+0.9
4,446,092	-				-0.9
4,446,092	-				+1.1
4,446,092	-				+0.3
4,446,092	-				-1.3
4,446,092	-				-1.3
4,446,098	+				+0.5
4,446,099	-				+0.7
4,446,127	+				-2.8
4,446,128	-				-0.8
4,446,128	-				+1.0
4,446,138	+				+0.7
4,446,138	+				-2.2
4,446,138	+				-0.3
4,446,138	+				+0.1
4,446,138	+				-0.5
4,446,138	+				-0.8
4,446,139	-				-2.3
4,446,139	-				+0.8
4,446,139	-				-1.0
4,446,139	-				-1.9
4,446,139	-				+0.4
4,446,145	+				+0.1
4,446,146	-				-0.9
4,446,146	-				-1.9
4,446,196	+				-2.1
4,446,196	+				-1.3
4,446,196	+				+1.1
4,446,196	+				-0.4
4,446,196	+				+1.0
4,446,196	+				+1.1
4,446,197	-				+0.1
4,446,197	-				-0.9
4,446,197	-				+1.2
4,446,197	-				+0.4
4,446,197	-				-1.0
4,446,197	-				-1.3
4,446,197	-				+0.3
4,446,197	-				+0.7
4,446,238	+				+1.2
4,446,256	-				+0.7
4,446,434	-				-0.7
4,446,480	+				+0.6
4,446,480	+				+0.9
4,446,480	+				-1.6
4,446,480	+				-2.3
4,446,480	+				-1.4
4,446,480	+				+0.7
4,446,480	+				+1.3
4,446,480	+				-0.6
4,446,480	+				+0.9
4,446,480	+				-0.2
4,446,481	-				+1.4
4,446,481	-				+0.2
4,446,481	-				+0.4
4,446,481	-				-1.1
4,446,517	+				-2.4
4,446,575	+				-0.0
4,446,659	+				-0.1
4,446,659	+				+0.4
4,446,659	+				+0.5
4,446,659	+				+1.4
4,446,659	+				-0.3
4,446,660	-				-0.1
4,446,660	-				-0.7
4,446,660	-				+0.6
4,446,660	-				-0.3
4,446,660	-				+1.0
4,446,660	-				-0.3
4,446,660	-				+1.7
4,446,660	-				+1.3
4,446,906	-		DZA65_RS20615	0.22	+1.5
4,446,906	-		DZA65_RS20615	0.22	+1.0
4,446,911	+		DZA65_RS20615	0.22	-1.6
4,446,911	+		DZA65_RS20615	0.22	-0.9
4,446,911	+		DZA65_RS20615	0.22	+2.5
4,446,911	+		DZA65_RS20615	0.22	-0.3
4,446,911	+		DZA65_RS20615	0.22	-0.3
4,446,911	+		DZA65_RS20615	0.22	-2.1
4,446,911	+		DZA65_RS20615	0.22	-0.1
4,446,912	-				-0.9
4,446,912	-		DZA65_RS20615	0.22	-0.0
4,446,912	-		DZA65_RS20615	0.22	-0.9
4,446,912	-		DZA65_RS20615	0.22	+0.7
4,446,912	-		DZA65_RS20615	0.22	-0.4
4,446,912	-		DZA65_RS20615	0.22	+0.9
4,446,912	-		DZA65_RS20615	0.22	-0.6
4,446,979	+		DZA65_RS20615	0.26	-1.3
4,446,979	+		DZA65_RS20615	0.26	-0.6
4,446,982	+		DZA65_RS20615	0.26	-0.4
4,446,982	+		DZA65_RS20615	0.26	+0.5
4,446,982	+		DZA65_RS20615	0.26	-0.5
4,446,982	+		DZA65_RS20615	0.26	+0.2
4,446,982	+		DZA65_RS20615	0.26	-0.2
4,446,982	+		DZA65_RS20615	0.26	+1.7
4,446,982	+		DZA65_RS20615	0.26	-1.0
4,446,983	-		DZA65_RS20615	0.26	+0.4
4,446,983	-		DZA65_RS20615	0.26	+1.7
4,446,991	+		DZA65_RS20615	0.26	+1.1
4,447,055	+		DZA65_RS20615	0.30	-0.7
4,447,055	+		DZA65_RS20615	0.30	-1.3
4,447,055	+		DZA65_RS20615	0.30	-0.9
4,447,055	+		DZA65_RS20615	0.30	+1.7
4,447,055	+		DZA65_RS20615	0.30	+1.6
4,447,055	+		DZA65_RS20615	0.30	+0.1
4,447,055	+		DZA65_RS20615	0.30	-0.3
4,447,056	-		DZA65_RS20615	0.30	-0.3
4,447,056	-		DZA65_RS20615	0.30	-1.6