Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19815

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,287,705	+				+0.4
4,287,706	-				-1.3
4,287,711	+				-0.7
4,287,711	+				+0.2
4,287,712	-				+2.0
4,287,712	-				+0.9
4,287,714	-				-0.4
4,287,714	-				-0.8
4,287,827	-		DZA65_RS19810	0.12	+0.7
4,287,908	-		DZA65_RS19810	0.20	-2.5
4,287,951	-		DZA65_RS19810	0.24	-0.1
4,287,961	+		DZA65_RS19810	0.25	-1.3
4,287,962	-		DZA65_RS19810	0.26	+0.1
4,287,962	-		DZA65_RS19810	0.26	+0.2
4,287,962	-		DZA65_RS19810	0.26	+0.9
4,287,979	-		DZA65_RS19810	0.27	-1.3
4,288,008	-		DZA65_RS19810	0.30	+1.2
4,288,045	+		DZA65_RS19810	0.34	+0.9
4,288,055	-		DZA65_RS19810	0.35	-1.5
4,288,111	-		DZA65_RS19810	0.41	+0.7
4,288,127	-		DZA65_RS19810	0.42	+1.5
4,288,143	+		DZA65_RS19810	0.44	-0.5
4,288,143	+		DZA65_RS19810	0.44	+0.6
4,288,143	+		DZA65_RS19810	0.44	-0.3
4,288,143	+		DZA65_RS19810	0.44	+0.7
4,288,144	-		DZA65_RS19810	0.44	-0.2
4,288,144	-		DZA65_RS19810	0.44	-1.4
4,288,144	-		DZA65_RS19810	0.44	+0.1
4,288,144	-		DZA65_RS19810	0.44	-0.5
4,288,252	+		DZA65_RS19810	0.55	-0.3
4,288,252	+		DZA65_RS19810	0.55	+1.7
4,288,252	+		DZA65_RS19810	0.55	-0.4
4,288,253	-		DZA65_RS19810	0.55	-0.7
4,288,253	-		DZA65_RS19810	0.55	+0.3
4,288,253	-		DZA65_RS19810	0.55	-0.7
4,288,253	-		DZA65_RS19810	0.55	+0.8
4,288,294	+		DZA65_RS19810	0.59	+0.3
4,288,295	-		DZA65_RS19810	0.59	-0.3
4,288,326	-		DZA65_RS19810	0.62	-0.1
4,288,334	+		DZA65_RS19810	0.63	+0.5
4,288,334	+		DZA65_RS19810	0.63	-0.3
4,288,334	+		DZA65_RS19810	0.63	-0.9
4,288,335	-		DZA65_RS19810	0.63	-0.6
4,288,335	-		DZA65_RS19810	0.63	+1.1
4,288,335	-		DZA65_RS19810	0.63	-1.4
4,288,335	-		DZA65_RS19810	0.63	+0.5
4,288,335	-		DZA65_RS19810	0.63	+0.4
4,288,379	-		DZA65_RS19810	0.68	-0.1
4,288,379	-		DZA65_RS19810	0.68	-0.0
4,288,400	+		DZA65_RS19810	0.70	-2.3
4,288,400	+		DZA65_RS19810	0.70	+1.3
4,288,400	+		DZA65_RS19810	0.70	-0.3
4,288,400	+		DZA65_RS19810	0.70	+1.0
4,288,400	+		DZA65_RS19810	0.70	-0.7
4,288,400	+		DZA65_RS19810	0.70	+0.4
4,288,401	-		DZA65_RS19810	0.70	-1.0
4,288,401	-		DZA65_RS19810	0.70	-0.1
4,288,401	-		DZA65_RS19810	0.70	-0.6
4,288,411	+		DZA65_RS19810	0.71	+1.6
4,288,411	+		DZA65_RS19810	0.71	+0.2
4,288,411	+		DZA65_RS19810	0.71	+0.7
4,288,411	+		DZA65_RS19810	0.71	-1.2
4,288,411	+		DZA65_RS19810	0.71	-0.6
4,288,411	+		DZA65_RS19810	0.71	-1.9
4,288,411	+		DZA65_RS19810	0.71	+0.3
4,288,411	+		DZA65_RS19810	0.71	+2.0
4,288,411	+		DZA65_RS19810	0.71	-0.5
4,288,411	+		DZA65_RS19810	0.71	+0.2
4,288,411	+		DZA65_RS19810	0.71	-0.1
4,288,412	-		DZA65_RS19810	0.71	-1.3
4,288,412	-		DZA65_RS19810	0.71	-1.6
4,288,412	-		DZA65_RS19810	0.71	+0.2
4,288,412	-		DZA65_RS19810	0.71	+0.1
4,288,412	-		DZA65_RS19810	0.71	+0.1
4,288,412	-		DZA65_RS19810	0.71	+0.3
4,288,415	+		DZA65_RS19810	0.71	-0.1
4,288,415	+		DZA65_RS19810	0.71	-2.5
4,288,415	+		DZA65_RS19810	0.71	-1.8
4,288,415	+		DZA65_RS19810	0.71	+0.1
4,288,415	+		DZA65_RS19810	0.71	-0.1
4,288,416	-		DZA65_RS19810	0.72	+1.1
4,288,416	-		DZA65_RS19810	0.72	-0.8
4,288,416	-		DZA65_RS19810	0.72	-0.9
4,288,416	-		DZA65_RS19810	0.72	-0.5
4,288,416	-				+3.7
4,288,416	-		DZA65_RS19810	0.72	+2.7
4,288,416	-		DZA65_RS19810	0.72	-0.9
4,288,495	+		DZA65_RS19810	0.80	-0.2
4,288,496	-		DZA65_RS19810	0.80	-0.3
4,288,496	-		DZA65_RS19810	0.80	+1.9
4,288,573	+		DZA65_RS19810	0.87	+1.4
4,288,573	+		DZA65_RS19810	0.87	+1.0
4,288,573	+		DZA65_RS19810	0.87	-1.3
4,288,663	+				-0.3
4,288,663	+				+0.8
4,288,663	+				+1.0
4,288,664	-				+0.0
4,288,774	+		DZA65_RS19815	0.12	-0.3
4,288,774	+		DZA65_RS19815	0.12	+0.2
4,288,774	+		DZA65_RS19815	0.12	+0.1
4,288,774	+		DZA65_RS19815	0.12	+0.1
4,288,774	+				+0.7
4,288,775	-		DZA65_RS19815	0.12	+0.8
4,288,790	+		DZA65_RS19815	0.14	+1.2
4,288,875	+		DZA65_RS19815	0.26	+1.2
4,288,875	+		DZA65_RS19815	0.26	-1.3
4,288,875	+		DZA65_RS19815	0.26	-0.3
4,288,876	-		DZA65_RS19815	0.26	+0.3
4,288,966	+				-0.6
4,288,966	+		DZA65_RS19815	0.39	-0.1
4,288,973	+		DZA65_RS19815	0.40	+0.4
4,288,973	+		DZA65_RS19815	0.40	+1.2
4,288,974	-				-1.3
4,288,974	-		DZA65_RS19815	0.40	+0.7
4,288,974	-		DZA65_RS19815	0.40	-0.5
4,288,974	-		DZA65_RS19815	0.40	-0.4
4,288,974	-		DZA65_RS19815	0.40	+0.6
4,288,974	-		DZA65_RS19815	0.40	+0.7
4,288,974	-		DZA65_RS19815	0.40	-0.2
4,288,974	-		DZA65_RS19815	0.40	+0.5
4,288,974	-		DZA65_RS19815	0.40	-1.1
4,288,974	-		DZA65_RS19815	0.40	-1.4
4,289,032	+		DZA65_RS19815	0.49	+0.6
4,289,033	-		DZA65_RS19815	0.49	+3.0
4,289,067	-		DZA65_RS19815	0.54	-0.3
4,289,210	-		DZA65_RS19815	0.74	+1.3
4,289,245	+		DZA65_RS19815	0.79	-0.1
4,289,245	+		DZA65_RS19815	0.79	+0.9
4,289,246	-		DZA65_RS19815	0.79	-0.5
4,289,246	-		DZA65_RS19815	0.79	-1.3
4,289,246	-		DZA65_RS19815	0.79	-2.9
4,289,246	-		DZA65_RS19815	0.79	+0.1
4,289,322	+				+0.4
4,289,322	+				-1.6
4,289,322	+				-0.2
4,289,322	+				+0.7
4,289,325	+				-0.5
4,289,325	+				+0.8
4,289,325	+				-1.0
4,289,325	+				+1.5
4,289,325	+				-2.5
4,289,326	-				+0.5
4,289,326	-				+1.0
4,289,332	-				+1.5
4,289,332	-				-0.5
4,289,388	+				-1.3
4,289,388	+				-0.5
4,289,388	+				+0.4
4,289,388	+				+0.1
4,289,388	+				+0.4
4,289,388	+				+0.3
4,289,388	+				+0.1
4,289,388	+				-0.5
4,289,388	+				+1.2
4,289,388	+				+0.5
4,289,388	+				+0.2
4,289,388	+				+0.7
4,289,389	-				-0.6
4,289,389	-				+0.4
4,289,389	-				-1.5
4,289,389	-				+0.1
4,289,389	-				-0.9
4,289,389	-				+0.2
4,289,389	-				-0.4
4,289,389	-				-0.0
4,289,392	+				-0.1
4,289,392	+				+0.7
4,289,392	+				-0.2
4,289,392	+				+0.4
4,289,392	+				-1.9
4,289,392	+				+1.3
4,289,393	-				+0.1
4,289,393	-				-1.1
4,289,393	-				-0.7
4,289,411	+				-1.2
4,289,450	+				-0.3
4,289,450	+				+1.2
4,289,450	+				-0.3
4,289,450	+				-0.3
4,289,450	+				+3.0
4,289,450	+				-0.8
4,289,451	-				-0.3
4,289,451	-				+1.2
4,289,451	-				+0.0
4,289,451	-				+0.5
4,289,451	-				-0.2
4,289,455	+				+0.4
4,289,455	+				+0.7
4,289,456	-				-1.3
4,289,456	-				-0.0
4,289,456	-				-1.3
4,289,456	-				-0.3
4,289,456	-				+0.1
4,289,456	-				-2.1
4,289,654	+		DZA65_RS19820	0.31	-0.5
4,289,654	+		DZA65_RS19820	0.31	-0.2
4,289,655	-		DZA65_RS19820	0.31	-1.1
4,289,670	-				-1.3
4,289,670	-		DZA65_RS19820	0.33	+0.1
4,289,676	+		DZA65_RS19820	0.34	-1.1
4,289,676	+				-0.3
4,289,676	+		DZA65_RS19820	0.34	+0.3
4,289,677	-		DZA65_RS19820	0.34	+0.7
4,289,694	-		DZA65_RS19820	0.36	+0.3
4,289,694	-		DZA65_RS19820	0.36	+0.9
4,289,703	+		DZA65_RS19820	0.37	-0.5
4,289,704	-		DZA65_RS19820	0.37	-0.1
4,289,704	-		DZA65_RS19820	0.37	+0.0
4,289,761	-		DZA65_RS19820	0.44	-0.3
4,289,801	+		DZA65_RS19820	0.49	+0.5
4,289,801	+		DZA65_RS19820	0.49	-1.6
4,289,801	+		DZA65_RS19820	0.49	-2.2
4,289,802	-		DZA65_RS19820	0.49	+0.7
4,289,802	-		DZA65_RS19820	0.49	+0.1
4,289,802	-		DZA65_RS19820	0.49	-0.1
4,289,802	-		DZA65_RS19820	0.49	+1.1
4,289,802	-		DZA65_RS19820	0.49	+2.1
4,289,808	-		DZA65_RS19820	0.50	+1.2
4,289,831	+		DZA65_RS19820	0.52	+1.4
4,289,831	+		DZA65_RS19820	0.52	-0.9
4,289,831	+		DZA65_RS19820	0.52	-0.3
4,289,832	-		DZA65_RS19820	0.53	+0.7
4,289,832	-		DZA65_RS19820	0.53	-0.7
4,289,834	+		DZA65_RS19820	0.53	+0.7
4,289,834	+		DZA65_RS19820	0.53	+0.4
4,289,834	+		DZA65_RS19820	0.53	-0.6
4,289,834	+		DZA65_RS19820	0.53	+2.2
4,289,834	+		DZA65_RS19820	0.53	+0.1
4,289,834	+		DZA65_RS19820	0.53	-1.4
4,289,835	-		DZA65_RS19820	0.53	-0.2
4,289,835	-		DZA65_RS19820	0.53	+2.2
4,289,835	-		DZA65_RS19820	0.53	-0.8
4,289,835	-		DZA65_RS19820	0.53	+0.4
4,289,835	-		DZA65_RS19820	0.53	-0.1
4,289,835	-		DZA65_RS19820	0.53	+0.2
4,289,867	+		DZA65_RS19820	0.57	+0.1
4,289,868	-		DZA65_RS19820	0.57	-0.5
4,289,875	+		DZA65_RS19820	0.58	+1.2
4,289,875	+		DZA65_RS19820	0.58	+0.0
4,289,875	+		DZA65_RS19820	0.58	-0.3
4,289,875	+		DZA65_RS19820	0.58	+0.5
4,289,875	+		DZA65_RS19820	0.58	+1.7
4,289,875	+		DZA65_RS19820	0.58	+1.7
4,289,875	+		DZA65_RS19820	0.58	+0.3
4,289,875	+		DZA65_RS19820	0.58	+0.1
4,289,875	+		DZA65_RS19820	0.58	-0.9
4,289,875	+		DZA65_RS19820	0.58	-2.3
4,289,875	+		DZA65_RS19820	0.58	-1.4
4,289,875	+		DZA65_RS19820	0.58	-0.9
4,289,875	+		DZA65_RS19820	0.58	+2.5
4,289,875	+		DZA65_RS19820	0.58	+0.1
4,289,875	+		DZA65_RS19820	0.58	+0.0
4,289,876	-		DZA65_RS19820	0.58	-2.0
4,289,876	-		DZA65_RS19820	0.58	+1.3
4,289,876	-		DZA65_RS19820	0.58	+2.1
4,289,876	-		DZA65_RS19820	0.58	-1.2
4,289,876	-		DZA65_RS19820	0.58	-0.5
4,289,876	-		DZA65_RS19820	0.58	+0.2
4,289,876	-		DZA65_RS19820	0.58	+0.3
4,289,876	-		DZA65_RS19820	0.58	+0.3
4,289,876	-		DZA65_RS19820	0.58	+0.1
4,289,876	-		DZA65_RS19820	0.58	+0.5
4,289,876	-		DZA65_RS19820	0.58	-1.9
4,289,876	-				-0.9
4,289,876	-		DZA65_RS19820	0.58	-0.2
4,289,878	+		DZA65_RS19820	0.58	+0.7
4,289,878	+		DZA65_RS19820	0.58	-0.7
4,289,879	-		DZA65_RS19820	0.58	+0.9
4,289,918	+		DZA65_RS19820	0.63	-1.5
4,289,919	-		DZA65_RS19820	0.63	+0.3
4,289,920	+		DZA65_RS19820	0.63	-0.3
4,289,921	-		DZA65_RS19820	0.63	+0.5
4,289,921	-		DZA65_RS19820	0.63	-0.1
4,289,930	+		DZA65_RS19820	0.64	+0.5
4,290,039	+		DZA65_RS19820	0.77	-0.1
4,290,039	+		DZA65_RS19820	0.77	+0.0
4,290,039	+		DZA65_RS19820	0.77	-0.3
4,290,040	-		DZA65_RS19820	0.77	-1.3
4,290,040	-		DZA65_RS19820	0.77	+0.4
4,290,040	-		DZA65_RS19820	0.77	+0.2
4,290,040	-		DZA65_RS19820	0.77	-0.1
4,290,040	-		DZA65_RS19820	0.77	-0.9
4,290,109	+		DZA65_RS19820	0.85	+0.8
4,290,109	+		DZA65_RS19820	0.85	+1.0
4,290,109	+		DZA65_RS19820	0.85	-0.5
4,290,109	+		DZA65_RS19820	0.85	+0.7
4,290,140	+		DZA65_RS19820	0.89	-0.9
4,290,140	+		DZA65_RS19820	0.89	+2.3
4,290,141	-		DZA65_RS19820	0.89	-0.9
4,290,141	-		DZA65_RS19820	0.89	+0.2
4,290,141	-		DZA65_RS19820	0.89	+0.5
4,290,169	+				+0.5
4,290,169	+				-0.5
4,290,170	-				-1.4
4,290,170	-				-1.6
4,290,170	-				+1.2
4,290,204	+				+0.1
4,290,204	+				+0.0
4,290,213	-				-0.2
4,290,213	-				+0.2
4,290,231	+				-0.7
4,290,232	-				+0.3
4,290,253	+				+0.4
4,290,277	+				-0.6
4,290,277	+				-2.1
4,290,277	+				-0.5
4,290,277	+				+1.1
4,290,277	+				-1.9
4,290,277	+				-2.2
4,290,278	-				+3.5
4,290,278	-				-0.3
4,290,278	-				-0.9
4,290,278	-				+0.4
4,290,278	-				-0.5
4,290,278	-				-1.3
4,290,278	-				+0.9
4,290,278	-				+0.3
4,290,296	+				-0.3
4,290,296	+				-0.5
4,290,297	-				+1.1
4,290,297	-				+0.1
4,290,318	+				+0.2
4,290,318	+				-1.3
4,290,318	+				+1.1
4,290,318	+				-0.4
4,290,318	+				+0.1
4,290,319	-				-0.3
4,290,320	+				-2.1
4,290,320	+				-0.3
4,290,320	+				+0.3
4,290,321	-				+4.1
4,290,321	-				+0.3
4,290,344	+				-0.9
4,290,345	-				+0.4
4,290,345	-				-1.6
4,290,368	+				-2.3
4,290,368	+				+0.9
4,290,369	-				-0.3
4,290,369	-				-0.1
4,290,369	-				+0.1
4,290,369	-				+0.0
4,290,379	+				-0.9
4,290,380	-				+0.5