Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19780

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,281,021	+		DZA65_RS19770	0.22	+0.0
4,281,021	+		DZA65_RS19770	0.22	+0.1
4,281,021	+		DZA65_RS19770	0.22	+0.4
4,281,022	-		DZA65_RS19770	0.22	+0.1
4,281,022	-		DZA65_RS19770	0.22	+0.7
4,281,114	+		DZA65_RS19770	0.34	-0.3
4,281,114	+		DZA65_RS19770	0.34	+0.3
4,281,114	+		DZA65_RS19770	0.34	+0.5
4,281,114	+		DZA65_RS19770	0.34	-2.6
4,281,114	+		DZA65_RS19770	0.34	+2.6
4,281,114	+		DZA65_RS19770	0.34	-1.3
4,281,114	+		DZA65_RS19770	0.34	-0.3
4,281,114	+		DZA65_RS19770	0.34	+0.0
4,281,114	+		DZA65_RS19770	0.34	-0.5
4,281,115	-		DZA65_RS19770	0.34	+1.0
4,281,115	-		DZA65_RS19770	0.34	-1.3
4,281,115	-		DZA65_RS19770	0.34	-0.2
4,281,115	-		DZA65_RS19770	0.34	-0.9
4,281,115	-		DZA65_RS19770	0.34	+1.6
4,281,115	-		DZA65_RS19770	0.34	-0.2
4,281,115	-		DZA65_RS19770	0.34	+0.9
4,281,115	-		DZA65_RS19770	0.34	+0.1
4,281,194	-		DZA65_RS19770	0.45	+1.2
4,281,206	+		DZA65_RS19770	0.47	+0.9
4,281,206	+		DZA65_RS19770	0.47	-0.2
4,281,207	-		DZA65_RS19770	0.47	-1.3
4,281,300	-		DZA65_RS19770	0.59	-1.0
4,281,300	-		DZA65_RS19770	0.59	+1.7
4,281,300	-		DZA65_RS19770	0.59	+0.9
4,281,390	-		DZA65_RS19770	0.72	-0.5
4,281,390	-		DZA65_RS19770	0.72	+0.0
4,281,404	+		DZA65_RS19770	0.73	-0.5
4,281,432	+		DZA65_RS19770	0.77	-0.0
4,281,518	+		DZA65_RS19770	0.89	-0.2
4,281,519	-		DZA65_RS19770	0.89	-0.3
4,281,519	-		DZA65_RS19770	0.89	+0.1
4,281,567	-				+0.4
4,281,567	-				+1.2
4,281,748	+		DZA65_RS19775	0.40	+0.7
4,281,748	+		DZA65_RS19775	0.40	-0.2
4,281,748	+		DZA65_RS19775	0.40	-2.1
4,281,748	+		DZA65_RS19775	0.40	-0.5
4,281,748	+		DZA65_RS19775	0.40	-0.1
4,281,748	+		DZA65_RS19775	0.40	-0.5
4,281,749	-		DZA65_RS19775	0.40	+0.7
4,281,749	-		DZA65_RS19775	0.40	+0.3
4,281,749	-		DZA65_RS19775	0.40	-0.0
4,281,749	-		DZA65_RS19775	0.40	-0.3
4,281,749	-		DZA65_RS19775	0.40	+0.5
4,281,824	-		DZA65_RS19775	0.62	-0.6
4,281,824	-		DZA65_RS19775	0.62	+0.1
4,281,824	-		DZA65_RS19775	0.62	-0.3
4,281,824	-		DZA65_RS19775	0.62	+0.9
4,281,829	-		DZA65_RS19775	0.63	+0.9
4,281,861	-		DZA65_RS19775	0.72	-0.9
4,281,956	+				-1.6
4,281,956	+				+0.2
4,281,956	+				-1.6
4,281,956	+				+1.0
4,281,956	+				+1.4
4,281,956	+				+0.9
4,281,956	+				+0.2
4,281,956	+				-0.6
4,281,956	+				+1.7
4,281,956	+				-1.6
4,281,957	-				-0.2
4,281,957	-				-0.5
4,281,957	-				-1.6
4,281,957	-				+0.0
4,281,957	-				-0.4
4,281,957	-				-0.1
4,281,957	-				+1.9
4,281,957	-				+2.9
4,281,960	+				-0.0
4,281,960	+				-2.5
4,281,960	+				-0.5
4,281,960	+				-0.3
4,281,960	+				-1.0
4,281,961	-				+0.3
4,281,961	-				+1.0
4,281,961	-				-0.3
4,281,961	-				+0.7
4,281,961	-				-1.9
4,281,961	-				+0.7
4,281,963	+				+0.7
4,281,963	+				-2.5
4,281,973	-				-1.0
4,281,973	-				-0.4
4,282,059	+		DZA65_RS19780	0.14	+0.7
4,282,059	+		DZA65_RS19780	0.14	+2.4
4,282,059	+		DZA65_RS19780	0.14	+1.0
4,282,059	+		DZA65_RS19780	0.14	+1.0
4,282,059	+		DZA65_RS19780	0.14	-2.3
4,282,059	+		DZA65_RS19780	0.14	-0.3
4,282,059	+		DZA65_RS19780	0.14	-1.2
4,282,059	+		DZA65_RS19780	0.14	+0.7
4,282,059	+		DZA65_RS19780	0.14	+0.9
4,282,059	+		DZA65_RS19780	0.14	+0.5
4,282,059	+		DZA65_RS19780	0.14	-1.5
4,282,059	+		DZA65_RS19780	0.14	+0.4
4,282,060	-		DZA65_RS19780	0.14	-0.3
4,282,060	-		DZA65_RS19780	0.14	+0.7
4,282,060	-		DZA65_RS19780	0.14	+0.2
4,282,060	-		DZA65_RS19780	0.14	-1.5
4,282,060	-		DZA65_RS19780	0.14	-0.3
4,282,060	-		DZA65_RS19780	0.14	+2.3
4,282,060	-		DZA65_RS19780	0.14	+0.2
4,282,060	-		DZA65_RS19780	0.14	-0.6
4,282,060	-		DZA65_RS19780	0.14	+2.8
4,282,060	-		DZA65_RS19780	0.14	+0.7
4,282,060	-		DZA65_RS19780	0.14	+0.2
4,282,072	+		DZA65_RS19780	0.16	+1.2
4,282,072	+				+3.8
4,282,073	-		DZA65_RS19780	0.16	-0.3
4,282,107	+		DZA65_RS19780	0.21	+0.4
4,282,107	+		DZA65_RS19780	0.21	-2.5
4,282,107	+		DZA65_RS19780	0.21	-0.3
4,282,107	+		DZA65_RS19780	0.21	-1.6
4,282,107	+		DZA65_RS19780	0.21	-0.3
4,282,107	+		DZA65_RS19780	0.21	+1.3
4,282,107	+		DZA65_RS19780	0.21	+2.0
4,282,107	+		DZA65_RS19780	0.21	-1.1
4,282,107	+		DZA65_RS19780	0.21	+0.7
4,282,108	-		DZA65_RS19780	0.21	-1.3
4,282,108	-		DZA65_RS19780	0.21	+0.7
4,282,108	-		DZA65_RS19780	0.21	+0.4
4,282,108	-		DZA65_RS19780	0.21	-1.1
4,282,108	-		DZA65_RS19780	0.21	+0.1
4,282,147	+		DZA65_RS19780	0.27	-1.3
4,282,147	+		DZA65_RS19780	0.27	+0.3
4,282,147	+		DZA65_RS19780	0.27	+1.0
4,282,148	-		DZA65_RS19780	0.27	+1.6
4,282,153	+		DZA65_RS19780	0.27	+0.7
4,282,195	+		DZA65_RS19780	0.33	+0.1
4,282,195	+		DZA65_RS19780	0.33	+0.5
4,282,195	+		DZA65_RS19780	0.33	-0.8
4,282,195	+		DZA65_RS19780	0.33	-0.4
4,282,195	+		DZA65_RS19780	0.33	+0.1
4,282,196	-		DZA65_RS19780	0.34	+0.3
4,282,196	-		DZA65_RS19780	0.34	+0.4
4,282,196	-		DZA65_RS19780	0.34	-0.6
4,282,196	-		DZA65_RS19780	0.34	-1.5
4,282,196	-		DZA65_RS19780	0.34	+0.4
4,282,196	-		DZA65_RS19780	0.34	+0.7
4,282,196	-		DZA65_RS19780	0.34	+0.2
4,282,196	-		DZA65_RS19780	0.34	-0.6
4,282,196	-		DZA65_RS19780	0.34	-0.9
4,282,196	-		DZA65_RS19780	0.34	-1.0
4,282,199	+		DZA65_RS19780	0.34	-0.9
4,282,199	+		DZA65_RS19780	0.34	-1.9
4,282,199	+		DZA65_RS19780	0.34	-0.5
4,282,200	-		DZA65_RS19780	0.34	+0.7
4,282,200	-		DZA65_RS19780	0.34	+1.0
4,282,239	+		DZA65_RS19780	0.40	+0.9
4,282,239	+		DZA65_RS19780	0.40	+2.1
4,282,239	+		DZA65_RS19780	0.40	+2.3
4,282,239	+		DZA65_RS19780	0.40	+0.3
4,282,239	+		DZA65_RS19780	0.40	-1.3
4,282,239	+		DZA65_RS19780	0.40	+0.7
4,282,239	+		DZA65_RS19780	0.40	-0.9
4,282,239	+		DZA65_RS19780	0.40	+0.7
4,282,239	+		DZA65_RS19780	0.40	-0.6
4,282,239	+		DZA65_RS19780	0.40	-0.1
4,282,239	+		DZA65_RS19780	0.40	+0.0
4,282,239	+		DZA65_RS19780	0.40	+0.4
4,282,239	+		DZA65_RS19780	0.40	+4.3
4,282,239	+		DZA65_RS19780	0.40	-0.6
4,282,239	+		DZA65_RS19780	0.40	-1.6
4,282,239	+		DZA65_RS19780	0.40	-0.3
4,282,239	+		DZA65_RS19780	0.40	+1.1
4,282,239	+		DZA65_RS19780	0.40	-0.3
4,282,240	-		DZA65_RS19780	0.40	+1.1
4,282,240	-		DZA65_RS19780	0.40	+0.5
4,282,240	-		DZA65_RS19780	0.40	+1.5
4,282,240	-		DZA65_RS19780	0.40	+1.1
4,282,240	-		DZA65_RS19780	0.40	-2.1
4,282,240	-		DZA65_RS19780	0.40	+0.1
4,282,240	-		DZA65_RS19780	0.40	+1.8
4,282,240	-		DZA65_RS19780	0.40	-1.2
4,282,240	-		DZA65_RS19780	0.40	+0.3
4,282,240	-		DZA65_RS19780	0.40	+0.5
4,282,240	-		DZA65_RS19780	0.40	+0.7
4,282,240	-		DZA65_RS19780	0.40	-0.8
4,282,306	+		DZA65_RS19780	0.49	+0.8
4,282,320	+		DZA65_RS19780	0.51	-0.3
4,282,320	+		DZA65_RS19780	0.51	-1.2
4,282,372	+		DZA65_RS19780	0.59	-1.1
4,282,372	+		DZA65_RS19780	0.59	+0.3
4,282,372	+		DZA65_RS19780	0.59	+0.1
4,282,372	+		DZA65_RS19780	0.59	+0.4
4,282,372	+		DZA65_RS19780	0.59	+0.4
4,282,372	+		DZA65_RS19780	0.59	-0.0
4,282,372	+		DZA65_RS19780	0.59	-1.9
4,282,372	+		DZA65_RS19780	0.59	-2.3
4,282,373	-		DZA65_RS19780	0.59	-0.0
4,282,373	-		DZA65_RS19780	0.59	-0.0
4,282,373	-		DZA65_RS19780	0.59	-0.6
4,282,373	-		DZA65_RS19780	0.59	+0.6
4,282,373	-		DZA65_RS19780	0.59	+1.4
4,282,373	-		DZA65_RS19780	0.59	-1.3
4,282,418	+		DZA65_RS19780	0.66	-1.3
4,282,428	+		DZA65_RS19780	0.67	+0.7
4,282,428	+		DZA65_RS19780	0.67	+0.4
4,282,448	+		DZA65_RS19780	0.70	+1.9
4,282,448	+		DZA65_RS19780	0.70	-0.3
4,282,448	+		DZA65_RS19780	0.70	+0.0
4,282,449	-		DZA65_RS19780	0.70	+0.1
4,282,449	-		DZA65_RS19780	0.70	-0.3
4,282,449	-		DZA65_RS19780	0.70	-0.3
4,282,471	-		DZA65_RS19780	0.73	+1.0
4,282,479	+		DZA65_RS19780	0.74	-0.1
4,282,479	+		DZA65_RS19780	0.74	+0.1
4,282,480	-		DZA65_RS19780	0.74	-0.9
4,282,480	-		DZA65_RS19780	0.74	+0.7
4,282,493	+		DZA65_RS19780	0.76	+0.7
4,282,493	+		DZA65_RS19780	0.76	+0.2
4,282,494	-		DZA65_RS19780	0.76	-1.3
4,282,494	-		DZA65_RS19780	0.76	+0.9
4,282,511	-		DZA65_RS19780	0.79	-0.8
4,282,511	-		DZA65_RS19780	0.79	+1.4
4,282,556	+		DZA65_RS19780	0.85	+0.7
4,282,556	+		DZA65_RS19780	0.85	+1.3
4,282,606	+				+0.9
4,282,760	+		DZA65_RS19785	0.11	+0.5
4,282,761	-		DZA65_RS19785	0.11	-0.5
4,282,841	+		DZA65_RS19785	0.21	-0.3
4,282,841	+		DZA65_RS19785	0.21	+0.1
4,282,842	-		DZA65_RS19785	0.22	-0.6
4,282,842	-		DZA65_RS19785	0.22	-0.2
4,282,889	+		DZA65_RS19785	0.28	-0.5
4,282,889	+				-0.3
4,282,889	+		DZA65_RS19785	0.28	+0.5
4,282,999	+		DZA65_RS19785	0.42	+0.2
4,283,009	+		DZA65_RS19785	0.44	-0.9
4,283,010	-		DZA65_RS19785	0.44	-0.7
4,283,010	-		DZA65_RS19785	0.44	-0.9
4,283,023	+		DZA65_RS19785	0.46	+1.0
4,283,023	+		DZA65_RS19785	0.46	-0.7
4,283,023	+		DZA65_RS19785	0.46	-0.3
4,283,023	+		DZA65_RS19785	0.46	-0.3
4,283,023	+		DZA65_RS19785	0.46	-0.6
4,283,023	+		DZA65_RS19785	0.46	+0.3
4,283,024	-		DZA65_RS19785	0.46	+0.5
4,283,028	-		DZA65_RS19785	0.46	+2.3
4,283,048	+		DZA65_RS19785	0.49	-0.0
4,283,049	-		DZA65_RS19785	0.49	-2.9
4,283,073	+		DZA65_RS19785	0.52	+1.3
4,283,073	+		DZA65_RS19785	0.52	-0.3
4,283,074	-		DZA65_RS19785	0.52	+0.7
4,283,074	-		DZA65_RS19785	0.52	+2.4
4,283,074	-		DZA65_RS19785	0.52	-0.9
4,283,130	+		DZA65_RS19785	0.60	-0.7
4,283,130	+		DZA65_RS19785	0.60	+1.4
4,283,130	+		DZA65_RS19785	0.60	-1.1
4,283,131	-		DZA65_RS19785	0.60	+2.2
4,283,131	-		DZA65_RS19785	0.60	+0.6
4,283,131	-		DZA65_RS19785	0.60	-0.3
4,283,131	-		DZA65_RS19785	0.60	-0.0
4,283,195	+		DZA65_RS19785	0.68	-1.1
4,283,195	+		DZA65_RS19785	0.68	+0.2
4,283,195	+		DZA65_RS19785	0.68	+0.8
4,283,195	+		DZA65_RS19785	0.68	+0.7
4,283,196	-		DZA65_RS19785	0.69	+0.4
4,283,207	+		DZA65_RS19785	0.70	-2.3
4,283,208	-		DZA65_RS19785	0.70	+0.3
4,283,217	+		DZA65_RS19785	0.71	+0.2
4,283,276	+		DZA65_RS19785	0.79	-0.3
4,283,277	-		DZA65_RS19785	0.79	-0.3
4,283,277	-		DZA65_RS19785	0.79	+0.4
4,283,277	-		DZA65_RS19785	0.79	-0.6
4,283,414	+				-1.2
4,283,414	+				+0.1
4,283,414	+				-3.0
4,283,414	+				-0.3
4,283,414	+				-0.3
4,283,415	-				+0.4
4,283,415	-				-0.8
4,283,415	-				+0.5
4,283,415	-				+1.1
4,283,415	-				-1.5
4,283,415	-				+0.8
4,283,415	-				-0.0
4,283,415	-				-1.1
4,283,416	+				-0.1
4,283,416	+				+1.5
4,283,417	-				-2.6
4,283,417	-				+1.3
4,283,417	-				-0.4
4,283,432	+				+0.4
4,283,432	+				-0.0
4,283,432	+				+0.5
4,283,432	+				-1.3
4,283,432	+				+0.5
4,283,432	+				+1.3
4,283,432	+				-0.8
4,283,433	-				-2.1
4,283,433	-				-1.3
4,283,433	-				+0.1
4,283,433	-				+1.0
4,283,433	-				+0.9
4,283,433	-				-0.6
4,283,433	-				+1.3
4,283,433	-				+0.7
4,283,443	+				-0.7
4,283,444	-				+0.7
4,283,444	-				+0.1
4,283,444	-				+0.7
4,283,444	-				-0.1
4,283,444	-				+0.6
4,283,444	-				+0.7
4,283,473	+				-0.6
4,283,473	+				-1.0
4,283,473	+				+0.4
4,283,473	+				+0.7
4,283,473	+				+0.3
4,283,474	-				+0.8
4,283,474	-				-1.9
4,283,474	-				+1.3
4,283,479	+				+0.7
4,283,480	-				-0.7
4,283,480	-				+1.4
4,283,491	+				+0.1
4,283,491	+				+1.7
4,283,491	+				+0.4
4,283,491	+				+0.5
4,283,491	+				+0.5
4,283,491	+				+4.0
4,283,492	-				+2.4
4,283,492	-				-1.1
4,283,492	-				+0.7
4,283,492	-				+1.4
4,283,499	+				-0.3
4,283,500	-				+0.5
4,283,500	-				-0.7
4,283,500	-				-2.1
4,283,500	-				-0.1
4,283,500	-				+0.5
4,283,500	-				+0.7
4,283,512	+				+0.4
4,283,512	+				+1.1
4,283,513	-				-0.1
4,283,514	+				+0.3
4,283,514	+				-1.9
4,283,514	+				+0.3
4,283,514	+				-1.9
4,283,515	-				+0.5
4,283,515	-				-0.8
4,283,515	-				-0.1
4,283,515	-				-1.6
4,283,515	-				-1.3
4,283,521	+				-1.3
4,283,521	+				-0.1
4,283,521	+				+0.0
4,283,521	+				-0.0
4,283,521	+				-0.2
4,283,521	+				-1.2
4,283,521	+				+1.3
4,283,522	-				+0.1
4,283,522	-				+0.4
4,283,535	+				-0.0
4,283,535	+				-0.6
4,283,535	+				+0.4
4,283,535	+				+0.3
4,283,535	+				+1.3
4,283,535	+				-0.5
4,283,535	+				+0.4
4,283,535	+				+1.4
4,283,535	+				-0.2
4,283,535	+				+0.6
4,283,536	-				-0.5
4,283,536	-				-0.2
4,283,536	-				-1.1
4,283,536	-				+0.9
4,283,536	-				+0.1
4,283,536	-				+0.7
4,283,536	-				+0.3
4,283,536	-				+1.2
4,283,536	-				-1.6
4,283,536	-				+0.6
4,283,536	-				+0.5
4,283,536	-				+1.4
4,283,538	+				+1.0
4,283,538	+				+3.0
4,283,539	-				-2.3
4,283,539	-				-0.6
4,283,549	+				-0.5
4,283,549	+				-1.0
4,283,549	+				-0.3
4,283,549	+				+0.0
4,283,550	-				+0.3
4,283,551	+				+0.5
4,283,551	+				+0.7
4,283,552	-				+0.4
4,283,552	-				-0.7
4,283,552	-				+0.7
4,283,552	-				-0.2
4,283,552	-				+1.1
4,283,552	-				+0.4
4,283,603	+		DZA65_RS19790	0.12	-0.7
4,283,604	-		DZA65_RS19790	0.13	-1.1