Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19725

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,271,026	+		DZA65_RS19720	0.33	-0.6
4,271,026	+		DZA65_RS19720	0.33	+0.3
4,271,026	+		DZA65_RS19720	0.33	-1.8
4,271,027	-		DZA65_RS19720	0.33	-0.3
4,271,027	-		DZA65_RS19720	0.33	+1.7
4,271,120	+		DZA65_RS19720	0.40	-0.3
4,271,120	+		DZA65_RS19720	0.40	+0.5
4,271,155	+		DZA65_RS19720	0.42	-0.6
4,271,155	+		DZA65_RS19720	0.42	-0.5
4,271,156	-		DZA65_RS19720	0.42	+0.8
4,271,156	-		DZA65_RS19720	0.42	-3.4
4,271,156	-		DZA65_RS19720	0.42	-1.8
4,271,156	-		DZA65_RS19720	0.42	-0.6
4,271,184	+		DZA65_RS19720	0.44	-2.3
4,271,184	+		DZA65_RS19720	0.44	+0.7
4,271,232	+		DZA65_RS19720	0.48	+0.1
4,271,233	-		DZA65_RS19720	0.48	-2.8
4,271,233	-		DZA65_RS19720	0.48	-1.9
4,271,233	-		DZA65_RS19720	0.48	+0.1
4,271,233	-		DZA65_RS19720	0.48	-2.1
4,271,233	-		DZA65_RS19720	0.48	-1.3
4,271,236	+		DZA65_RS19720	0.48	-1.9
4,271,236	+		DZA65_RS19720	0.48	-1.9
4,271,236	+		DZA65_RS19720	0.48	-2.6
4,271,236	+		DZA65_RS19720	0.48	-1.7
4,271,236	+		DZA65_RS19720	0.48	-1.9
4,271,236	+		DZA65_RS19720	0.48	-0.9
4,271,236	+		DZA65_RS19720	0.48	-1.7
4,271,237	-		DZA65_RS19720	0.48	-1.2
4,271,267	-		DZA65_RS19720	0.50	-2.9
4,271,267	-		DZA65_RS19720	0.50	-2.6
4,271,293	+		DZA65_RS19720	0.52	-1.8
4,271,294	-		DZA65_RS19720	0.52	-0.2
4,271,318	+		DZA65_RS19720	0.54	-0.3
4,271,318	+		DZA65_RS19720	0.54	-2.5
4,271,416	+		DZA65_RS19720	0.61	+0.4
4,271,470	+		DZA65_RS19720	0.65	-2.0
4,271,470	+		DZA65_RS19720	0.65	-0.3
4,271,471	-		DZA65_RS19720	0.65	-1.5
4,271,471	-		DZA65_RS19720	0.65	-2.1
4,271,471	-		DZA65_RS19720	0.65	+0.0
4,271,471	-		DZA65_RS19720	0.65	+1.1
4,271,477	+		DZA65_RS19720	0.65	-1.7
4,271,477	+		DZA65_RS19720	0.65	+0.1
4,271,477	+		DZA65_RS19720	0.65	-2.0
4,271,477	+		DZA65_RS19720	0.65	+0.1
4,271,477	+		DZA65_RS19720	0.65	-1.9
4,271,477	+		DZA65_RS19720	0.65	-3.0
4,271,477	+		DZA65_RS19720	0.65	-2.6
4,271,477	+		DZA65_RS19720	0.65	-0.7
4,271,477	+		DZA65_RS19720	0.65	-2.1
4,271,478	-		DZA65_RS19720	0.65	-1.6
4,271,478	-		DZA65_RS19720	0.65	-0.8
4,271,478	-		DZA65_RS19720	0.65	-0.3
4,271,478	-		DZA65_RS19720	0.65	+0.1
4,271,478	-		DZA65_RS19720	0.65	-3.0
4,271,478	-		DZA65_RS19720	0.65	-1.4
4,271,479	+		DZA65_RS19720	0.65	+0.1
4,271,479	+		DZA65_RS19720	0.65	-3.3
4,271,479	+		DZA65_RS19720	0.65	-2.0
4,271,479	+		DZA65_RS19720	0.65	-0.8
4,271,480	-		DZA65_RS19720	0.65	-1.5
4,271,480	-		DZA65_RS19720	0.65	-0.8
4,271,480	-		DZA65_RS19720	0.65	+0.4
4,271,480	-		DZA65_RS19720	0.65	-1.5
4,271,521	+		DZA65_RS19720	0.68	-1.0
4,271,522	-		DZA65_RS19720	0.68	-0.3
4,271,529	+		DZA65_RS19720	0.69	-0.2
4,271,530	-		DZA65_RS19720	0.69	-1.5
4,271,535	+		DZA65_RS19720	0.69	-0.9
4,271,535	+		DZA65_RS19720	0.69	-3.1
4,271,536	-		DZA65_RS19720	0.69	-1.9
4,271,586	+		DZA65_RS19720	0.73	-1.1
4,271,587	-		DZA65_RS19720	0.73	-1.5
4,271,651	+		DZA65_RS19720	0.78	-0.6
4,271,652	-		DZA65_RS19720	0.78	-0.9
4,271,682	+		DZA65_RS19720	0.80	-0.9
4,271,682	+		DZA65_RS19720	0.80	-1.8
4,271,682	+		DZA65_RS19720	0.80	-0.3
4,271,682	+		DZA65_RS19720	0.80	-2.2
4,271,683	-		DZA65_RS19720	0.80	-2.3
4,271,683	-		DZA65_RS19720	0.80	-0.7
4,271,698	+		DZA65_RS19720	0.81	+2.5
4,271,698	+		DZA65_RS19720	0.81	-0.0
4,271,698	+		DZA65_RS19720	0.81	-3.4
4,271,698	+		DZA65_RS19720	0.81	-3.8
4,271,698	+		DZA65_RS19720	0.81	-0.1
4,271,698	+		DZA65_RS19720	0.81	-2.8
4,271,699	-		DZA65_RS19720	0.81	-2.6
4,271,699	-		DZA65_RS19720	0.81	-3.1
4,271,699	-		DZA65_RS19720	0.81	+0.7
4,271,699	-		DZA65_RS19720	0.81	-2.2
4,271,699	-		DZA65_RS19720	0.81	-0.4
4,271,713	+		DZA65_RS19720	0.82	-1.6
4,271,714	-		DZA65_RS19720	0.82	-0.9
4,271,718	+		DZA65_RS19720	0.82	+0.1
4,271,753	+		DZA65_RS19720	0.85	-1.2
4,271,753	+		DZA65_RS19720	0.85	-2.1
4,271,753	+		DZA65_RS19720	0.85	+0.4
4,271,753	+		DZA65_RS19720	0.85	+0.7
4,271,754	-		DZA65_RS19720	0.85	-2.3
4,271,754	-		DZA65_RS19720	0.85	-0.6
4,271,803	+		DZA65_RS19720	0.89	-1.3
4,271,803	+		DZA65_RS19720	0.89	-0.9
4,271,804	-		DZA65_RS19720	0.89	+0.7
4,271,804	-		DZA65_RS19720	0.89	-2.2
4,271,824	-				-1.5
4,271,824	-				-1.6
4,271,864	-				-2.3
4,271,869	+				-1.6
4,271,869	+				-3.2
4,271,869	+				-1.0
4,271,869	+				-2.6
4,271,869	+				-0.5
4,271,869	+				-2.0
4,271,869	+				-0.9
4,271,870	-				+0.4
4,271,870	-				+2.7
4,271,870	-				-0.5
4,271,870	-				-2.3
4,271,870	-				-0.5
4,271,927	+				-1.3
4,271,927	+				+0.2
4,271,948	-				-3.0
4,271,964	-				-0.7
4,271,984	+				-2.1
4,271,984	+				-1.5
4,271,984	+				-2.3
4,271,985	-				-1.3
4,271,985	-				-2.4
4,271,986	+				-1.5
4,271,986	+				-1.3
4,271,986	+				-0.9
4,271,986	+				-0.3
4,271,986	+				-0.1
4,271,986	+				-1.1
4,271,986	+				-0.3
4,271,986	+				+0.1
4,271,986	+				-1.3
4,271,986	+				-2.3
4,271,986	+				-0.3
4,271,986	+				-1.1
4,271,986	+				-0.4
4,271,986	+				+1.7
4,271,986	+				-0.8
4,271,986	+				+0.0
4,271,986	+				+0.2
4,271,987	-				+1.3
4,271,987	-				+1.1
4,271,987	-				-2.6
4,271,987	-				-0.8
4,271,987	-				+3.3
4,271,987	-				-0.5
4,271,987	-				-0.7
4,271,987	-				-1.1
4,271,987	-				-1.6
4,271,987	-				-1.5
4,271,987	-				-0.5
4,272,109	-				-0.4
4,272,109	-				-0.8
4,272,114	+				-1.1
4,272,114	+				-0.7
4,272,114	+				+0.3
4,272,114	+				+0.7
4,272,201	+		DZA65_RS19725	0.16	-1.1
4,272,201	+		DZA65_RS19725	0.16	-0.5
4,272,201	+		DZA65_RS19725	0.16	-1.2
4,272,201	+		DZA65_RS19725	0.16	-1.3
4,272,201	+		DZA65_RS19725	0.16	+1.3
4,272,201	+		DZA65_RS19725	0.16	-1.6
4,272,202	-		DZA65_RS19725	0.16	+2.7
4,272,202	-		DZA65_RS19725	0.16	-0.1
4,272,202	-		DZA65_RS19725	0.16	-3.4
4,272,207	+		DZA65_RS19725	0.16	-2.3
4,272,207	+		DZA65_RS19725	0.16	-1.3
4,272,207	+		DZA65_RS19725	0.16	-1.8
4,272,207	+		DZA65_RS19725	0.16	-0.3
4,272,208	-		DZA65_RS19725	0.16	-1.6
4,272,208	-		DZA65_RS19725	0.16	-3.1
4,272,208	-		DZA65_RS19725	0.16	-0.1
4,272,208	-		DZA65_RS19725	0.16	-0.8
4,272,227	+		DZA65_RS19725	0.17	-0.2
4,272,227	+		DZA65_RS19725	0.17	-1.0
4,272,227	+		DZA65_RS19725	0.17	-0.1
4,272,228	-		DZA65_RS19725	0.18	+0.2
4,272,228	-		DZA65_RS19725	0.18	-0.6
4,272,228	-		DZA65_RS19725	0.18	-0.9
4,272,228	-		DZA65_RS19725	0.18	-2.3
4,272,296	+		DZA65_RS19725	0.22	+0.7
4,272,354	+		DZA65_RS19725	0.27	-2.5
4,272,361	+		DZA65_RS19725	0.27	-2.9
4,272,362	-		DZA65_RS19725	0.27	-3.5
4,272,362	-		DZA65_RS19725	0.27	-0.3
4,272,385	+		DZA65_RS19725	0.29	-2.3
4,272,385	+		DZA65_RS19725	0.29	-3.8
4,272,386	-		DZA65_RS19725	0.29	-0.6
4,272,422	+		DZA65_RS19725	0.32	-0.3
4,272,422	+		DZA65_RS19725	0.32	-2.1
4,272,422	+		DZA65_RS19725	0.32	-2.8
4,272,422	+		DZA65_RS19725	0.32	-2.8
4,272,422	+		DZA65_RS19725	0.32	-1.9
4,272,422	+		DZA65_RS19725	0.32	-1.5
4,272,423	-		DZA65_RS19725	0.32	-0.5
4,272,424	+		DZA65_RS19725	0.32	-1.3
4,272,425	-		DZA65_RS19725	0.32	-0.2
4,272,425	-		DZA65_RS19725	0.32	-1.6
4,272,438	+		DZA65_RS19725	0.33	-1.9
4,272,438	+		DZA65_RS19725	0.33	-1.4
4,272,438	+		DZA65_RS19725	0.33	+0.7
4,272,438	+		DZA65_RS19725	0.33	-0.6
4,272,439	-		DZA65_RS19725	0.33	+0.7
4,272,439	-		DZA65_RS19725	0.33	+1.5
4,272,439	-		DZA65_RS19725	0.33	-0.3
4,272,439	-		DZA65_RS19725	0.33	-0.1
4,272,439	-		DZA65_RS19725	0.33	+0.0
4,272,439	-		DZA65_RS19725	0.33	-0.9
4,272,439	-		DZA65_RS19725	0.33	-0.6
4,272,449	+		DZA65_RS19725	0.34	-0.5
4,272,449	+		DZA65_RS19725	0.34	-1.4
4,272,450	-		DZA65_RS19725	0.34	+0.0
4,272,450	-		DZA65_RS19725	0.34	-2.0
4,272,450	-		DZA65_RS19725	0.34	-1.3
4,272,462	+		DZA65_RS19725	0.35	-0.8
4,272,462	+		DZA65_RS19725	0.35	-1.1
4,272,462	+		DZA65_RS19725	0.35	-0.9
4,272,462	+		DZA65_RS19725	0.35	-3.3
4,272,462	+		DZA65_RS19725	0.35	+0.3
4,272,462	+		DZA65_RS19725	0.35	-1.1
4,272,462	+		DZA65_RS19725	0.35	-2.6
4,272,462	+		DZA65_RS19725	0.35	-1.0
4,272,462	+		DZA65_RS19725	0.35	-3.2
4,272,462	+		DZA65_RS19725	0.35	-0.3
4,272,462	+		DZA65_RS19725	0.35	-0.1
4,272,462	+		DZA65_RS19725	0.35	-2.8
4,272,462	+		DZA65_RS19725	0.35	-1.6
4,272,463	-		DZA65_RS19725	0.35	-1.5
4,272,463	-		DZA65_RS19725	0.35	-0.2
4,272,463	-		DZA65_RS19725	0.35	-2.0
4,272,463	-		DZA65_RS19725	0.35	-1.3
4,272,463	-		DZA65_RS19725	0.35	-0.3
4,272,463	-		DZA65_RS19725	0.35	-1.6
4,272,463	-		DZA65_RS19725	0.35	+0.2
4,272,463	-		DZA65_RS19725	0.35	-1.1
4,272,463	-		DZA65_RS19725	0.35	+0.7
4,272,463	-		DZA65_RS19725	0.35	+1.4
4,272,463	-		DZA65_RS19725	0.35	-1.8
4,272,463	-		DZA65_RS19725	0.35	-1.9
4,272,470	+		DZA65_RS19725	0.35	+1.3
4,272,470	+		DZA65_RS19725	0.35	-3.0
4,272,470	+		DZA65_RS19725	0.35	-0.6
4,272,470	+		DZA65_RS19725	0.35	-1.6
4,272,470	+		DZA65_RS19725	0.35	-1.6
4,272,470	+		DZA65_RS19725	0.35	-2.0
4,272,470	+		DZA65_RS19725	0.35	-0.9
4,272,470	+				-0.3
4,272,470	+		DZA65_RS19725	0.35	+0.7
4,272,470	+		DZA65_RS19725	0.35	-2.1
4,272,470	+		DZA65_RS19725	0.35	+0.7
4,272,470	+		DZA65_RS19725	0.35	-1.3
4,272,470	+		DZA65_RS19725	0.35	-2.8
4,272,471	-		DZA65_RS19725	0.35	-1.2
4,272,471	-		DZA65_RS19725	0.35	-1.6
4,272,471	-		DZA65_RS19725	0.35	-0.9
4,272,471	-		DZA65_RS19725	0.35	-2.0
4,272,596	-		DZA65_RS19725	0.44	-2.5
4,272,603	+		DZA65_RS19725	0.45	-1.6
4,272,603	+		DZA65_RS19725	0.45	-0.3
4,272,603	+		DZA65_RS19725	0.45	-2.6
4,272,603	+		DZA65_RS19725	0.45	-2.8
4,272,603	+		DZA65_RS19725	0.45	-3.1
4,272,604	-		DZA65_RS19725	0.45	-0.3
4,272,604	-		DZA65_RS19725	0.45	-1.9
4,272,604	-		DZA65_RS19725	0.45	-3.5
4,272,604	-		DZA65_RS19725	0.45	-0.1
4,272,604	-		DZA65_RS19725	0.45	-0.5
4,272,604	-		DZA65_RS19725	0.45	-0.2
4,272,673	+		DZA65_RS19725	0.50	-2.1
4,272,673	+		DZA65_RS19725	0.50	-2.0
4,272,673	+		DZA65_RS19725	0.50	-3.2
4,272,674	-		DZA65_RS19725	0.50	-1.9
4,272,674	-		DZA65_RS19725	0.50	-3.6
4,272,674	-		DZA65_RS19725	0.50	-0.6
4,272,674	-		DZA65_RS19725	0.50	-2.8
4,272,674	-		DZA65_RS19725	0.50	-1.6
4,272,674	-		DZA65_RS19725	0.50	-2.1
4,272,674	-		DZA65_RS19725	0.50	-1.0
4,272,692	-		DZA65_RS19725	0.51	-0.8
4,272,692	-		DZA65_RS19725	0.51	-1.0
4,272,692	-		DZA65_RS19725	0.51	+0.1
4,272,692	-		DZA65_RS19725	0.51	-4.5
4,272,692	-		DZA65_RS19725	0.51	-0.5
4,272,697	+		DZA65_RS19725	0.52	-0.6
4,272,697	+		DZA65_RS19725	0.52	-2.1
4,272,698	-		DZA65_RS19725	0.52	-1.9
4,272,750	-		DZA65_RS19725	0.56	-2.1
4,272,755	-		DZA65_RS19725	0.56	-1.3
4,272,755	-		DZA65_RS19725	0.56	-2.0
4,272,779	+		DZA65_RS19725	0.58	-1.7
4,272,779	+		DZA65_RS19725	0.58	+0.1
4,272,780	-		DZA65_RS19725	0.58	-1.1
4,272,782	+		DZA65_RS19725	0.58	-1.0
4,272,782	+		DZA65_RS19725	0.58	-2.1
4,272,782	+		DZA65_RS19725	0.58	-1.3
4,272,782	+		DZA65_RS19725	0.58	-0.1
4,272,782	+		DZA65_RS19725	0.58	+0.7
4,272,782	+		DZA65_RS19725	0.58	-1.1
4,272,782	+		DZA65_RS19725	0.58	-0.1
4,272,782	+		DZA65_RS19725	0.58	-0.9
4,272,782	+		DZA65_RS19725	0.58	-1.9
4,272,782	+		DZA65_RS19725	0.58	-1.2
4,272,783	-		DZA65_RS19725	0.58	-2.0
4,272,783	-		DZA65_RS19725	0.58	-1.0
4,272,783	-		DZA65_RS19725	0.58	-1.5
4,272,783	-		DZA65_RS19725	0.58	-1.0
4,272,783	-		DZA65_RS19725	0.58	-1.9
4,272,783	-		DZA65_RS19725	0.58	-1.3
4,272,783	-		DZA65_RS19725	0.58	-2.1
4,272,783	-		DZA65_RS19725	0.58	-1.4
4,272,783	-		DZA65_RS19725	0.58	+0.7
4,272,783	-		DZA65_RS19725	0.58	+0.2
4,272,783	-		DZA65_RS19725	0.58	-1.3
4,272,865	+		DZA65_RS19725	0.64	-1.3
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