Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19620

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,248,818	+				-0.9
4,248,818	+				+1.3
4,248,818	+				+1.5
4,248,819	-				+0.4
4,248,819	-				-0.3
4,248,866	+				-0.2
4,248,867	-				+0.2
4,248,867	-				+0.3
4,248,995	+		DZA65_RS19615	0.23	-0.8
4,248,995	+		DZA65_RS19615	0.23	+0.1
4,248,995	+		DZA65_RS19615	0.23	+0.1
4,248,995	+		DZA65_RS19615	0.23	+0.2
4,248,995	+		DZA65_RS19615	0.23	-0.5
4,248,995	+		DZA65_RS19615	0.23	+1.8
4,248,995	+		DZA65_RS19615	0.23	-0.5
4,248,995	+		DZA65_RS19615	0.23	+0.7
4,248,995	+		DZA65_RS19615	0.23	-2.1
4,248,996	-		DZA65_RS19615	0.23	-1.5
4,248,996	-		DZA65_RS19615	0.23	-0.9
4,248,996	-		DZA65_RS19615	0.23	-1.0
4,249,090	+		DZA65_RS19615	0.41	+4.2
4,249,090	+		DZA65_RS19615	0.41	+0.7
4,249,090	+		DZA65_RS19615	0.41	-0.8
4,249,090	+		DZA65_RS19615	0.41	+0.9
4,249,091	-		DZA65_RS19615	0.42	-2.3
4,249,131	+				+1.3
4,249,132	-		DZA65_RS19615	0.50	+0.7
4,249,132	-		DZA65_RS19615	0.50	+0.1
4,249,132	-		DZA65_RS19615	0.50	-1.2
4,249,132	-		DZA65_RS19615	0.50	+0.1
4,249,132	-		DZA65_RS19615	0.50	+1.4
4,249,133	+		DZA65_RS19615	0.50	-0.2
4,249,133	+		DZA65_RS19615	0.50	-0.4
4,249,133	+		DZA65_RS19615	0.50	+0.8
4,249,133	+		DZA65_RS19615	0.50	+2.7
4,249,133	+		DZA65_RS19615	0.50	-0.1
4,249,133	+		DZA65_RS19615	0.50	+0.3
4,249,133	+		DZA65_RS19615	0.50	+0.3
4,249,133	+		DZA65_RS19615	0.50	-0.0
4,249,133	+		DZA65_RS19615	0.50	-2.5
4,249,133	+		DZA65_RS19615	0.50	+0.7
4,249,134	-		DZA65_RS19615	0.50	+1.0
4,249,262	+		DZA65_RS19615	0.75	-0.1
4,249,388	+				-2.0
4,249,389	-				-1.6
4,249,451	+				-0.7
4,249,451	+				-1.3
4,249,451	+				+1.0
4,249,452	-				+0.7
4,249,452	-				+2.6
4,249,489	+				+0.2
4,249,489	+				+0.5
4,249,490	-				-0.9
4,249,490	-				-0.3
4,249,490	-				+0.9
4,249,490	-				+2.4
4,249,490	-				+0.2
4,249,522	-				+0.9
4,249,522	-				-0.9
4,249,522	-				+1.6
4,249,628	+		DZA65_RS19620	0.20	+0.6
4,249,628	+		DZA65_RS19620	0.20	+1.5
4,249,628	+				+1.3
4,249,628	+		DZA65_RS19620	0.20	-0.6
4,249,629	-		DZA65_RS19620	0.20	+0.2
4,249,629	-		DZA65_RS19620	0.20	+0.3
4,249,629	-		DZA65_RS19620	0.20	-0.1
4,249,629	-		DZA65_RS19620	0.20	+1.5
4,249,629	-		DZA65_RS19620	0.20	-1.9
4,249,639	+		DZA65_RS19620	0.21	+0.9
4,249,639	+		DZA65_RS19620	0.21	+1.5
4,249,640	-		DZA65_RS19620	0.21	-0.1
4,249,640	-		DZA65_RS19620	0.21	-0.3
4,249,640	-		DZA65_RS19620	0.21	+0.3
4,249,640	-		DZA65_RS19620	0.21	+0.5
4,249,703	-		DZA65_RS19620	0.30	+0.7
4,249,743	+		DZA65_RS19620	0.36	-0.6
4,249,743	+		DZA65_RS19620	0.36	+2.0
4,249,743	+		DZA65_RS19620	0.36	+0.1
4,249,744	-		DZA65_RS19620	0.36	+0.7
4,249,744	-		DZA65_RS19620	0.36	+0.6
4,249,744	-		DZA65_RS19620	0.36	-0.7
4,249,744	-		DZA65_RS19620	0.36	+1.0
4,249,744	-		DZA65_RS19620	0.36	+1.0
4,249,744	-		DZA65_RS19620	0.36	+1.3
4,249,823	+		DZA65_RS19620	0.48	+1.1
4,249,845	+		DZA65_RS19620	0.51	+1.8
4,249,845	+		DZA65_RS19620	0.51	+1.4
4,249,845	+		DZA65_RS19620	0.51	+0.9
4,249,845	+		DZA65_RS19620	0.51	+2.0
4,249,846	-		DZA65_RS19620	0.51	+1.5
4,249,846	-		DZA65_RS19620	0.51	-1.3
4,249,846	-		DZA65_RS19620	0.51	-0.9
4,249,846	-		DZA65_RS19620	0.51	+2.3
4,249,846	-		DZA65_RS19620	0.51	+0.3
4,249,846	-		DZA65_RS19620	0.51	+1.1
4,249,897	+		DZA65_RS19620	0.58	+0.7
4,249,897	+		DZA65_RS19620	0.58	+0.5
4,249,897	+		DZA65_RS19620	0.58	-0.3
4,249,897	+		DZA65_RS19620	0.58	+0.3
4,249,897	+		DZA65_RS19620	0.58	+0.1
4,249,897	+		DZA65_RS19620	0.58	+0.9
4,249,898	-		DZA65_RS19620	0.58	+0.7
4,249,898	-		DZA65_RS19620	0.58	-0.1
4,249,898	-		DZA65_RS19620	0.58	+0.6
4,249,898	-		DZA65_RS19620	0.58	+0.1
4,249,898	-		DZA65_RS19620	0.58	+1.3
4,249,898	-		DZA65_RS19620	0.58	+0.5
4,249,901	+		DZA65_RS19620	0.59	-0.9
4,249,901	+		DZA65_RS19620	0.59	+0.4
4,249,901	+		DZA65_RS19620	0.59	+0.4
4,249,902	-		DZA65_RS19620	0.59	+0.9
4,249,902	-		DZA65_RS19620	0.59	+0.1
4,249,902	-		DZA65_RS19620	0.59	+1.6
4,249,902	-		DZA65_RS19620	0.59	-0.5
4,249,902	-		DZA65_RS19620	0.59	+2.7
4,249,902	-		DZA65_RS19620	0.59	+2.1
4,249,931	+		DZA65_RS19620	0.63	-1.1
4,249,931	+		DZA65_RS19620	0.63	+0.9
4,250,012	-		DZA65_RS19620	0.75	-0.3
4,250,012	-		DZA65_RS19620	0.75	+1.0
4,250,015	+		DZA65_RS19620	0.75	+1.2
4,250,015	+		DZA65_RS19620	0.75	-2.8
4,250,015	+		DZA65_RS19620	0.75	+0.8
4,250,015	+		DZA65_RS19620	0.75	+1.2
4,250,015	+		DZA65_RS19620	0.75	-2.4
4,250,015	+		DZA65_RS19620	0.75	-1.6
4,250,015	+		DZA65_RS19620	0.75	+1.4
4,250,016	-		DZA65_RS19620	0.75	+0.7
4,250,016	-		DZA65_RS19620	0.75	+1.0
4,250,016	-		DZA65_RS19620	0.75	+0.3
4,250,016	-		DZA65_RS19620	0.75	+0.4
4,250,016	-		DZA65_RS19620	0.75	+1.5
4,250,016	-		DZA65_RS19620	0.75	+0.6
4,250,016	-		DZA65_RS19620	0.75	+0.8
4,250,016	-		DZA65_RS19620	0.75	+1.3
4,250,016	-		DZA65_RS19620	0.75	-0.8
4,250,016	-		DZA65_RS19620	0.75	+0.5
4,250,016	-		DZA65_RS19620	0.75	+1.3
4,250,021	+				+2.0
4,250,021	+		DZA65_RS19620	0.76	+2.1
4,250,021	+		DZA65_RS19620	0.76	+1.1
4,250,021	+		DZA65_RS19620	0.76	+0.1
4,250,021	+		DZA65_RS19620	0.76	+0.9
4,250,021	+		DZA65_RS19620	0.76	+1.4
4,250,021	+		DZA65_RS19620	0.76	-2.1
4,250,021	+		DZA65_RS19620	0.76	+1.3
4,250,021	+		DZA65_RS19620	0.76	+1.3
4,250,021	+		DZA65_RS19620	0.76	+1.5
4,250,021	+		DZA65_RS19620	0.76	-0.5
4,250,022	-		DZA65_RS19620	0.76	+0.5
4,250,022	-		DZA65_RS19620	0.76	+0.0
4,250,022	-		DZA65_RS19620	0.76	+0.3
4,250,022	-		DZA65_RS19620	0.76	-0.3
4,250,022	-		DZA65_RS19620	0.76	+1.1
4,250,022	-		DZA65_RS19620	0.76	+0.7
4,250,022	-		DZA65_RS19620	0.76	+0.7
4,250,022	-		DZA65_RS19620	0.76	+0.3
4,250,022	-		DZA65_RS19620	0.76	+0.4
4,250,022	-		DZA65_RS19620	0.76	+0.5
4,250,022	-		DZA65_RS19620	0.76	-0.1
4,250,022	-		DZA65_RS19620	0.76	+0.3
4,250,022	-		DZA65_RS19620	0.76	+2.5
4,250,022	-		DZA65_RS19620	0.76	+0.2
4,250,022	-		DZA65_RS19620	0.76	+0.9
4,250,024	-		DZA65_RS19620	0.76	+1.7
4,250,024	-		DZA65_RS19620	0.76	+0.7
4,250,036	+		DZA65_RS19620	0.78	+1.0
4,250,037	-		DZA65_RS19620	0.78	-0.3
4,250,162	+				+1.6
4,250,162	+				-0.5
4,250,162	+				+0.8
4,250,163	-				+0.7
4,250,163	-				+0.3
4,250,163	-				+2.8
4,250,163	-				+1.4
4,250,199	+				-1.3
4,250,199	+				-0.6
4,250,199	+				-0.1
4,250,199	+				+0.4
4,250,200	-				+0.9
4,250,202	+				-0.3
4,250,202	+				-0.1
4,250,202	+				+0.3
4,250,202	+				+0.6
4,250,202	+				+0.8
4,250,202	+				-1.1
4,250,203	-				-0.3
4,250,203	-				-1.0
4,250,203	-				+0.3
4,250,203	-				+0.7
4,250,203	-				-1.6
4,250,203	-				+1.1
4,250,203	-				-0.9
4,250,203	-				-0.1
4,250,203	-				-1.6
4,250,219	+				+0.3
4,250,219	+				-0.5
4,250,219	+				+0.1
4,250,220	-				+1.1
4,250,220	-				-0.3
4,250,220	-				+1.5
4,250,220	-				+0.2
4,250,220	-				-0.3
4,250,220	-				+0.5
4,250,221	+				-0.1
4,250,221	+				-0.3
4,250,221	+				-0.1
4,250,221	+				-0.0
4,250,221	+				+0.3
4,250,221	+				+1.7
4,250,221	+				+0.3
4,250,221	+				+1.7
4,250,222	-				-0.6
4,250,222	-				-0.8
4,250,222	-				-0.2
4,250,222	-				-0.8
4,250,222	-				-1.1
4,250,222	-				-0.3
4,250,300	+				+0.4
4,250,301	-				-0.1
4,250,301	-				-0.1
4,250,301	-				+0.3
4,250,301	-				-0.2
4,250,301	-				+0.1
4,250,301	-				+0.2
4,250,301	-				-0.0
4,250,312	-				+0.1
4,250,312	-				-1.3
4,250,323	+				-1.6
4,250,464	+		DZA65_RS19625	0.20	+0.1
4,250,464	+		DZA65_RS19625	0.20	+1.0
4,250,464	+		DZA65_RS19625	0.20	+0.0
4,250,465	-		DZA65_RS19625	0.20	-0.6
4,250,465	-		DZA65_RS19625	0.20	+1.1
4,250,488	+		DZA65_RS19625	0.23	-0.4
4,250,488	+		DZA65_RS19625	0.23	+0.6
4,250,514	+		DZA65_RS19625	0.27	-1.3
4,250,818	+		DZA65_RS19625	0.68	-1.9
4,250,955	-		DZA65_RS19625	0.87	+0.2
4,250,960	+		DZA65_RS19625	0.88	-0.1
4,250,960	+		DZA65_RS19625	0.88	-1.8
4,250,960	+		DZA65_RS19625	0.88	-1.5
4,250,960	+		DZA65_RS19625	0.88	+2.2
4,250,960	+		DZA65_RS19625	0.88	+0.3
4,250,961	-		DZA65_RS19625	0.88	-0.2
4,250,961	-		DZA65_RS19625	0.88	-1.1
4,250,988	-				+3.0
4,251,028	+				+0.0
4,251,028	+				+0.5
4,251,029	-				-0.9
4,251,029	-				-0.8
4,251,057	+				-0.7
4,251,057	+				+0.7
4,251,057	+				-1.6
4,251,058	-				-1.6
4,251,058	-				+0.9
4,251,058	-				-1.1
4,251,068	-				+1.7
4,251,170	+		DZA65_RS19630	0.11	-0.9
4,251,170	+		DZA65_RS19630	0.11	-0.6
4,251,170	+		DZA65_RS19630	0.11	-1.2
4,251,170	+		DZA65_RS19630	0.11	-1.0
4,251,170	+		DZA65_RS19630	0.11	+1.3
4,251,170	+		DZA65_RS19630	0.11	-0.1
4,251,170	+		DZA65_RS19630	0.11	-0.7
4,251,170	+		DZA65_RS19630	0.11	-0.5
4,251,170	+		DZA65_RS19630	0.11	+0.9
4,251,170	+		DZA65_RS19630	0.11	-0.6
4,251,171	-		DZA65_RS19630	0.11	+1.2
4,251,171	-		DZA65_RS19630	0.11	-0.5
4,251,171	-		DZA65_RS19630	0.11	-0.9
4,251,171	-		DZA65_RS19630	0.11	+1.3
4,251,171	-		DZA65_RS19630	0.11	+0.3
4,251,171	-		DZA65_RS19630	0.11	+0.1
4,251,171	-		DZA65_RS19630	0.11	+1.2
4,251,171	-		DZA65_RS19630	0.11	-0.1