Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19535

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,227,770	+		DZA65_RS19530	0.54	-1.3
4,227,803	-		DZA65_RS19530	0.56	-0.9
4,227,928	+		DZA65_RS19530	0.64	-0.9
4,227,929	-		DZA65_RS19530	0.64	+1.3
4,227,968	-		DZA65_RS19530	0.66	+1.3
4,228,005	+		DZA65_RS19530	0.68	+0.5
4,228,006	-		DZA65_RS19530	0.68	+0.1
4,228,006	-		DZA65_RS19530	0.68	-1.6
4,228,078	-		DZA65_RS19530	0.73	+0.1
4,228,145	+		DZA65_RS19530	0.77	-0.2
4,228,145	+		DZA65_RS19530	0.77	-1.2
4,228,145	+		DZA65_RS19530	0.77	+3.1
4,228,145	+		DZA65_RS19530	0.77	-0.1
4,228,145	+		DZA65_RS19530	0.77	+0.7
4,228,145	+		DZA65_RS19530	0.77	-0.5
4,228,145	+		DZA65_RS19530	0.77	-0.2
4,228,146	-		DZA65_RS19530	0.77	+1.0
4,228,146	-		DZA65_RS19530	0.77	-0.5
4,228,146	-		DZA65_RS19530	0.77	-1.9
4,228,146	-		DZA65_RS19530	0.77	-0.3
4,228,146	-		DZA65_RS19530	0.77	-0.9
4,228,146	-		DZA65_RS19530	0.77	+0.8
4,228,146	-		DZA65_RS19530	0.77	-0.9
4,228,190	-		DZA65_RS19530	0.79	+0.5
4,228,239	+		DZA65_RS19530	0.82	+0.4
4,228,239	+		DZA65_RS19530	0.82	+1.1
4,228,239	+		DZA65_RS19530	0.82	-0.7
4,228,240	-		DZA65_RS19530	0.82	-0.9
4,228,240	-		DZA65_RS19530	0.82	-1.6
4,228,354	+		DZA65_RS19530	0.89	-1.3
4,228,454	+				+0.5
4,228,464	-				-0.1
4,228,464	-				-0.2
4,228,474	+				-0.3
4,228,474	+				-1.3
4,228,474	+				-0.4
4,228,474	+				-1.0
4,228,474	+				+0.0
4,228,474	+				+0.7
4,228,475	-				-1.9
4,228,475	-				-0.4
4,228,514	+				-1.3
4,228,515	-				+0.5
4,228,515	-				+1.7
4,228,515	-				-1.7
4,228,620	-				-0.0
4,228,647	+				+1.0
4,228,647	+				-0.3
4,228,756	-				-1.6
4,229,049	+		DZA65_RS19535	0.19	-0.3
4,229,103	+		DZA65_RS19535	0.22	-0.1
4,229,184	+		DZA65_RS19535	0.27	+0.4
4,229,184	+		DZA65_RS19535	0.27	+0.3
4,229,199	+		DZA65_RS19535	0.28	+0.2
4,229,199	+		DZA65_RS19535	0.28	-0.5
4,229,199	+		DZA65_RS19535	0.28	-3.6
4,229,199	+		DZA65_RS19535	0.28	+1.9
4,229,199	+		DZA65_RS19535	0.28	+0.4
4,229,199	+		DZA65_RS19535	0.28	+2.6
4,229,199	+		DZA65_RS19535	0.28	+0.4
4,229,199	+		DZA65_RS19535	0.28	-0.1
4,229,199	+		DZA65_RS19535	0.28	+1.3
4,229,200	-		DZA65_RS19535	0.28	+0.2
4,229,200	-		DZA65_RS19535	0.28	-2.5
4,229,200	-		DZA65_RS19535	0.28	+0.5
4,229,200	-		DZA65_RS19535	0.28	-0.9
4,229,200	-		DZA65_RS19535	0.28	+2.0
4,229,200	-		DZA65_RS19535	0.28	+1.0
4,229,200	-		DZA65_RS19535	0.28	-0.1
4,229,200	-		DZA65_RS19535	0.28	+1.2
4,229,200	-		DZA65_RS19535	0.28	-0.3
4,229,203	+		DZA65_RS19535	0.28	+0.7
4,229,203	+		DZA65_RS19535	0.28	-0.2
4,229,203	+		DZA65_RS19535	0.28	+0.7
4,229,203	+		DZA65_RS19535	0.28	+0.2
4,229,203	+		DZA65_RS19535	0.28	-0.3
4,229,203	+		DZA65_RS19535	0.28	-0.9
4,229,203	+		DZA65_RS19535	0.28	+2.2
4,229,203	+		DZA65_RS19535	0.28	-0.6
4,229,203	+		DZA65_RS19535	0.28	-1.6
4,229,203	+		DZA65_RS19535	0.28	+0.1
4,229,203	+		DZA65_RS19535	0.28	-0.9
4,229,204	-		DZA65_RS19535	0.28	+0.7
4,229,204	-		DZA65_RS19535	0.28	+0.9
4,229,204	-		DZA65_RS19535	0.28	+0.9
4,229,204	-		DZA65_RS19535	0.28	+1.8
4,229,204	-		DZA65_RS19535	0.28	-0.6
4,229,204	-		DZA65_RS19535	0.28	+1.0
4,229,204	-		DZA65_RS19535	0.28	+2.5
4,229,204	-		DZA65_RS19535	0.28	+0.4
4,229,284	-		DZA65_RS19535	0.33	-1.3
4,229,353	-		DZA65_RS19535	0.37	+0.7
4,229,353	-		DZA65_RS19535	0.37	-0.4
4,229,385	+		DZA65_RS19535	0.38	-0.4
4,229,579	+		DZA65_RS19535	0.50	+1.3
4,229,579	+		DZA65_RS19535	0.50	-2.4
4,229,579	+		DZA65_RS19535	0.50	-1.1
4,229,580	-		DZA65_RS19535	0.50	+0.7
4,229,580	-		DZA65_RS19535	0.50	+1.6
4,229,583	+		DZA65_RS19535	0.50	+0.3
4,229,583	+		DZA65_RS19535	0.50	-0.3
4,229,583	+		DZA65_RS19535	0.50	+1.3
4,229,584	-		DZA65_RS19535	0.50	-1.9
4,229,584	-		DZA65_RS19535	0.50	-2.3
4,229,584	-		DZA65_RS19535	0.50	+0.3
4,229,584	-		DZA65_RS19535	0.50	-0.6
4,229,584	-		DZA65_RS19535	0.50	-0.3
4,229,584	-		DZA65_RS19535	0.50	-1.3
4,229,584	-		DZA65_RS19535	0.50	+0.7
4,229,584	-		DZA65_RS19535	0.50	-1.6
4,229,584	-		DZA65_RS19535	0.50	-1.4
4,229,637	+		DZA65_RS19535	0.53	+0.3
4,229,637	+		DZA65_RS19535	0.53	-2.2
4,229,637	+		DZA65_RS19535	0.53	+0.4
4,229,637	+		DZA65_RS19535	0.53	-1.2
4,229,637	+		DZA65_RS19535	0.53	-0.9
4,229,637	+		DZA65_RS19535	0.53	+0.0
4,229,637	+		DZA65_RS19535	0.53	+0.6
4,229,637	+		DZA65_RS19535	0.53	+0.4
4,229,637	+		DZA65_RS19535	0.53	-0.3
4,229,637	+		DZA65_RS19535	0.53	+1.3
4,229,638	-		DZA65_RS19535	0.53	+0.8
4,229,638	-		DZA65_RS19535	0.53	-0.5
4,229,638	-		DZA65_RS19535	0.53	+0.8
4,229,638	-		DZA65_RS19535	0.53	-0.5
4,229,638	-		DZA65_RS19535	0.53	-1.1
4,229,638	-		DZA65_RS19535	0.53	+0.1
4,229,638	-		DZA65_RS19535	0.53	+0.4
4,229,638	-		DZA65_RS19535	0.53	+1.0
4,229,638	-		DZA65_RS19535	0.53	-1.3
4,229,638	-		DZA65_RS19535	0.53	+1.8
4,229,638	-		DZA65_RS19535	0.53	+0.4
4,229,638	-		DZA65_RS19535	0.53	+0.9
4,229,638	-				+0.1
4,229,638	-				+0.7
4,229,639	+		DZA65_RS19535	0.53	-1.3
4,229,639	+		DZA65_RS19535	0.53	+0.0
4,229,639	+		DZA65_RS19535	0.53	-0.9
4,229,639	+		DZA65_RS19535	0.53	+0.3
4,229,639	+		DZA65_RS19535	0.53	-1.9
4,229,639	+		DZA65_RS19535	0.53	+1.4
4,229,639	+		DZA65_RS19535	0.53	+0.7
4,229,640	-		DZA65_RS19535	0.53	+0.8
4,229,640	-		DZA65_RS19535	0.53	-0.5
4,229,640	-		DZA65_RS19535	0.53	+1.2
4,229,640	-		DZA65_RS19535	0.53	-0.0
4,229,640	-		DZA65_RS19535	0.53	+1.3
4,229,640	-		DZA65_RS19535	0.53	+0.2
4,229,640	-		DZA65_RS19535	0.53	-0.1
4,229,640	-		DZA65_RS19535	0.53	+1.3
4,229,640	-		DZA65_RS19535	0.53	+1.3
4,229,640	-		DZA65_RS19535	0.53	-0.5
4,229,640	-				-0.3
4,229,640	-		DZA65_RS19535	0.53	-0.0
4,229,640	-		DZA65_RS19535	0.53	-1.2
4,229,640	-		DZA65_RS19535	0.53	-0.3
4,229,640	-		DZA65_RS19535	0.53	+0.7
4,229,640	-		DZA65_RS19535	0.53	-1.5
4,229,640	-		DZA65_RS19535	0.53	+0.7
4,229,640	-		DZA65_RS19535	0.53	+0.7
4,229,640	-		DZA65_RS19535	0.53	-0.0
4,229,661	+		DZA65_RS19535	0.55	-0.9
4,229,733	+		DZA65_RS19535	0.59	+0.4
4,229,780	+		DZA65_RS19535	0.62	+2.4
4,229,780	+		DZA65_RS19535	0.62	+0.4
4,229,780	+		DZA65_RS19535	0.62	-0.1
4,229,780	+		DZA65_RS19535	0.62	+1.2
4,229,780	+		DZA65_RS19535	0.62	-0.3
4,229,781	-		DZA65_RS19535	0.62	-1.1
4,229,781	-		DZA65_RS19535	0.62	-0.6
4,229,811	+		DZA65_RS19535	0.63	-0.1
4,229,812	-		DZA65_RS19535	0.63	+0.0
4,229,833	-		DZA65_RS19535	0.65	+0.3
4,229,868	+		DZA65_RS19535	0.67	-0.1
4,229,868	+		DZA65_RS19535	0.67	-0.6
4,229,868	+		DZA65_RS19535	0.67	+0.0
4,229,869	-		DZA65_RS19535	0.67	-0.5
4,229,871	+		DZA65_RS19535	0.67	-0.5
4,229,871	+		DZA65_RS19535	0.67	-0.6
4,229,871	+		DZA65_RS19535	0.67	-1.1
4,229,871	+		DZA65_RS19535	0.67	+1.2
4,229,872	-		DZA65_RS19535	0.67	+0.2
4,229,872	-		DZA65_RS19535	0.67	+1.4
4,229,872	-		DZA65_RS19535	0.67	+1.4
4,229,872	-		DZA65_RS19535	0.67	-0.0
4,229,872	-		DZA65_RS19535	0.67	-1.9
4,229,872	-		DZA65_RS19535	0.67	-1.2
4,229,894	+		DZA65_RS19535	0.68	+1.4
4,229,894	+		DZA65_RS19535	0.68	-1.0
4,229,894	+		DZA65_RS19535	0.68	+0.1
4,229,894	+		DZA65_RS19535	0.68	+0.1
4,229,895	-		DZA65_RS19535	0.68	+0.5
4,229,895	-		DZA65_RS19535	0.68	-0.9
4,229,895	-				+0.1
4,229,911	+		DZA65_RS19535	0.69	-0.0
4,229,912	-		DZA65_RS19535	0.69	+0.7
4,229,924	+		DZA65_RS19535	0.70	-0.1
4,230,016	+		DZA65_RS19535	0.75	+0.6
4,230,016	+		DZA65_RS19535	0.75	+1.1
4,230,016	+		DZA65_RS19535	0.75	-0.3
4,230,016	+		DZA65_RS19535	0.75	-1.2
4,230,016	+		DZA65_RS19535	0.75	-1.8
4,230,017	-		DZA65_RS19535	0.75	+1.4
4,230,017	-		DZA65_RS19535	0.75	-0.5
4,230,017	-		DZA65_RS19535	0.75	+0.9
4,230,017	-		DZA65_RS19535	0.75	+0.4
4,230,017	-		DZA65_RS19535	0.75	+0.5
4,230,017	-		DZA65_RS19535	0.75	-0.6
4,230,038	+		DZA65_RS19535	0.77	+0.5
4,230,038	+		DZA65_RS19535	0.77	+1.1
4,230,038	+		DZA65_RS19535	0.77	-0.3
4,230,038	+		DZA65_RS19535	0.77	-0.3
4,230,038	+		DZA65_RS19535	0.77	+0.9
4,230,038	+		DZA65_RS19535	0.77	-1.9
4,230,038	+		DZA65_RS19535	0.77	+0.1
4,230,038	+		DZA65_RS19535	0.77	-0.9
4,230,038	+		DZA65_RS19535	0.77	+0.2
4,230,038	+		DZA65_RS19535	0.77	-0.3
4,230,039	-		DZA65_RS19535	0.77	-0.1
4,230,039	-		DZA65_RS19535	0.77	+0.9
4,230,039	-		DZA65_RS19535	0.77	-1.6
4,230,039	-		DZA65_RS19535	0.77	+0.3
4,230,039	-		DZA65_RS19535	0.77	+0.4
4,230,039	-		DZA65_RS19535	0.77	-0.3
4,230,039	-		DZA65_RS19535	0.77	-0.6
4,230,039	-		DZA65_RS19535	0.77	-0.6
4,230,039	-		DZA65_RS19535	0.77	-0.7
4,230,099	+		DZA65_RS19535	0.80	+0.3
4,230,099	+		DZA65_RS19535	0.80	+0.4
4,230,100	-		DZA65_RS19535	0.80	+0.9
4,230,100	-		DZA65_RS19535	0.80	+1.1
4,230,100	-		DZA65_RS19535	0.80	-0.0
4,230,100	-		DZA65_RS19535	0.80	-0.9
4,230,100	-		DZA65_RS19535	0.80	-0.5
4,230,100	-		DZA65_RS19535	0.80	-0.4
4,230,100	-		DZA65_RS19535	0.80	+0.4
4,230,100	-		DZA65_RS19535	0.80	+1.1
4,230,100	-		DZA65_RS19535	0.80	+0.7
4,230,101	+		DZA65_RS19535	0.80	+1.4
4,230,101	+		DZA65_RS19535	0.80	+0.8
4,230,101	+		DZA65_RS19535	0.80	+0.9
4,230,101	+		DZA65_RS19535	0.80	+0.5
4,230,101	+		DZA65_RS19535	0.80	-1.3
4,230,101	+		DZA65_RS19535	0.80	+0.1
4,230,101	+		DZA65_RS19535	0.80	-0.0
4,230,101	+		DZA65_RS19535	0.80	-0.5
4,230,101	+		DZA65_RS19535	0.80	-0.5
4,230,101	+		DZA65_RS19535	0.80	-1.6
4,230,102	-		DZA65_RS19535	0.80	+0.2
4,230,102	-		DZA65_RS19535	0.80	-1.0
4,230,102	-		DZA65_RS19535	0.80	+0.5
4,230,102	-		DZA65_RS19535	0.80	+0.9
4,230,102	-		DZA65_RS19535	0.80	+0.5
4,230,102	-		DZA65_RS19535	0.80	+0.1
4,230,102	-		DZA65_RS19535	0.80	+4.7
4,230,102	-		DZA65_RS19535	0.80	+0.2
4,230,102	-		DZA65_RS19535	0.80	-1.1
4,230,150	+		DZA65_RS19535	0.83	-0.0
4,230,150	+		DZA65_RS19535	0.83	+0.7
4,230,150	+		DZA65_RS19535	0.83	-0.1
4,230,150	+		DZA65_RS19535	0.83	-0.8
4,230,150	+		DZA65_RS19535	0.83	+0.2
4,230,150	+		DZA65_RS19535	0.83	-1.5
4,230,151	-		DZA65_RS19535	0.83	+0.9
4,230,151	-		DZA65_RS19535	0.83	-1.2
4,230,151	-		DZA65_RS19535	0.83	-0.9
4,230,151	-		DZA65_RS19535	0.83	-0.7
4,230,164	+		DZA65_RS19535	0.84	-0.1
4,230,300	+				-2.8
4,230,300	+				+1.1
4,230,300	+				+0.2
4,230,300	+				+1.0
4,230,301	-				-2.8
4,230,301	-				-0.6
4,230,301	-				-1.8
4,230,301	-				-0.5
4,230,301	-				-0.7
4,230,301	-				-0.9
4,230,317	+				-0.9
4,230,317	+				-0.5
4,230,317	+				+0.5
4,230,318	-				-0.2
4,230,318	-				-1.9
4,230,328	-				+4.1
4,230,358	-				-2.0
4,230,376	-				-1.3
4,230,396	+				+0.1
4,230,399	+				-0.3
4,230,399	+				+0.5
4,230,399	+				+0.9
4,230,399	+				-1.6
4,230,399	+				+1.7
4,230,400	-				-0.3
4,230,400	-				+0.9
4,230,400	-				+0.3
4,230,400	-				+0.7
4,230,400	-				+0.1
4,230,400	-				+0.4
4,230,403	+				+0.1
4,230,404	-				-0.9
4,230,404	-				-0.9
4,230,414	+				+0.1
4,230,415	-				+0.1
4,230,415	-				+0.3
4,230,455	+				+0.7
4,230,456	-				-0.3
4,230,456	-				-1.6
4,230,499	+				+1.3
4,230,499	+				+1.2
4,230,499	+				-0.9
4,230,499	+				+0.1
4,230,499	+				+1.8
4,230,499	+				-0.2
4,230,500	-				+0.4
4,230,500	-				+0.9
4,230,500	-				+1.0
4,230,500	-				-0.2
4,230,500	-				+1.2
4,230,500	-				+0.9
4,230,501	+				-1.8
4,230,501	+				-0.8
4,230,502	-				+1.5
4,230,502	-				-0.7
4,230,502	-				+1.6
4,230,657	+				-1.6
4,230,657	+				+0.1
4,230,657	+				+1.4
4,230,673	+				-0.9
4,230,673	+				-2.1
4,230,673	+				-2.6
4,230,673	+				+0.3
4,230,673	+				+0.8
4,230,674	-				+1.4
4,230,684	+				+1.3
4,230,684	+				-3.2
4,230,684	+				+0.0
4,230,684	+				-1.4
4,230,685	-				-0.9
4,230,685	-				+0.5
4,230,727	+				-0.9
4,230,727	+				+0.4
4,230,727	+				-0.0
4,230,727	+				+0.1
4,230,727	+				+2.5
4,230,727	+				-1.1
4,230,727	+				+0.5
4,230,727	+				-0.1
4,230,728	-				+0.9
4,230,728	-				-0.0
4,230,738	+				+0.2
4,230,739	-				+1.0
4,230,739	-				+3.8
4,230,800	+				-0.6
4,230,860	-				+0.4
4,230,902	+				-1.1
4,230,957	+				+0.3
4,230,957	+				-0.9
4,230,957	+				+0.7
4,230,958	-				+0.1
4,230,958	-				-1.6
4,230,991	+				-0.2
4,230,991	+				+0.7
4,231,123	-				-1.3
4,231,149	+				-1.6
4,231,149	+				-1.1
4,231,150	-				-1.3
4,231,150	-				-2.8
4,231,207	+		DZA65_RS19540	0.15	-0.9
4,231,400	+		DZA65_RS19540	0.30	-3.1
4,231,400	+		DZA65_RS19540	0.30	-0.9
4,231,400	+				-0.3
4,231,401	-				+0.7
4,231,401	-		DZA65_RS19540	0.30	-0.6
4,231,401	-		DZA65_RS19540	0.30	-2.8
4,231,401	-		DZA65_RS19540	0.30	-1.2
4,231,401	-		DZA65_RS19540	0.30	-1.6
4,231,401	-		DZA65_RS19540	0.30	-0.9
4,231,401	-		DZA65_RS19540	0.30	-0.6
4,231,401	-		DZA65_RS19540	0.30	-2.2
4,231,401	-		DZA65_RS19540	0.30	-2.1
4,231,401	-		DZA65_RS19540	0.30	-1.8