Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19490

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,218,118	-		DZA65_RS19485	0.79	+0.4
4,218,118	-		DZA65_RS19485	0.79	+0.3
4,218,118	-		DZA65_RS19485	0.79	-0.7
4,218,138	+		DZA65_RS19485	0.80	-0.9
4,218,159	-		DZA65_RS19485	0.81	-0.6
4,218,226	+		DZA65_RS19485	0.83	+0.8
4,218,227	-		DZA65_RS19485	0.83	+0.8
4,218,227	-		DZA65_RS19485	0.83	-0.5
4,218,270	+		DZA65_RS19485	0.85	-0.2
4,218,270	+		DZA65_RS19485	0.85	-0.7
4,218,271	-		DZA65_RS19485	0.85	-1.3
4,218,271	-		DZA65_RS19485	0.85	-1.5
4,218,447	+				-1.2
4,218,447	+				-0.1
4,218,448	-				-0.4
4,218,448	-				-2.1
4,218,535	-				+0.1
4,218,645	-				+0.9
4,218,645	-				+0.9
4,218,712	+				+0.9
4,218,712	+				-0.7
4,218,712	+				-0.8
4,218,712	+				-0.0
4,218,712	+				-0.1
4,218,712	+				+1.2
4,218,712	+				+0.2
4,218,713	-				-1.7
4,218,713	-				+0.2
4,218,713	-				-1.1
4,218,713	-				+0.7
4,218,713	-				+0.2
4,218,713	-				-0.8
4,218,731	+				+0.0
4,218,731	+				+0.2
4,218,732	-				-0.3
4,218,742	+				-0.3
4,218,743	-				-0.3
4,218,748	+				-1.4
4,218,749	-				+0.3
4,218,749	-				-0.3
4,218,798	+				-0.7
4,218,836	+				+1.0
4,218,837	-				+1.2
4,218,839	+				+0.7
4,218,839	+				-0.1
4,218,839	+				-0.7
4,218,839	+				-0.7
4,218,839	+				+0.6
4,218,840	-				+1.7
4,218,840	-				+0.7
4,218,843	-				-0.0
4,218,891	+				-1.7
4,218,892	-				-0.3
4,218,905	-				+0.3
4,218,913	+				+1.0
4,218,914	-				-0.1
4,218,914	-				+0.2
4,218,916	+				-0.2
4,218,916	+				-0.7
4,218,916	+				-0.2
4,218,916	+				-1.3
4,218,916	+				-0.0
4,218,916	+				-0.3
4,218,917	-				+0.9
4,218,917	-				+0.3
4,218,917	-				+1.2
4,218,917	-				+0.7
4,218,917	-				-1.3
4,218,917	-				-0.2
4,218,917	-				+0.2
4,218,917	-				+0.9
4,218,917	-				-0.9
4,218,917	-				-1.2
4,218,917	-				-0.5
4,218,917	-				+0.2
4,218,937	+				-2.1
4,218,938	-				+0.2
4,218,938	-				+1.0
4,218,963	+				-0.3
4,218,963	+				-0.4
4,218,967	+				-0.9
4,218,967	+				-0.4
4,218,967	+				-1.1
4,218,967	+				+1.0
4,218,967	+				+0.5
4,218,967	+				+0.2
4,218,968	-				-0.3
4,218,968	-				-1.7
4,218,968	-				+0.2
4,218,968	-				-0.1
4,218,968	-				-0.6
4,218,968	-				+1.0
4,218,968	-				-1.1
4,218,973	-				-1.7
4,218,990	+				-0.3
4,218,990	+				+0.4
4,219,123	+				-0.0
4,219,123	+				+0.3
4,219,123	+				+0.0
4,219,124	-				-0.9
4,219,124	-				-0.3
4,219,132	+				-0.5
4,219,132	+				-2.7
4,219,133	-				+0.7
4,219,133	-				+0.4
4,219,133	-				-0.6
4,219,133	-				-0.5
4,219,133	-				+3.0
4,219,133	-				+0.8
4,219,133	-				+0.7
4,219,133	-				-0.7
4,219,314	+				+0.7
4,219,320	+		DZA65_RS19490	0.36	+0.3
4,219,320	+		DZA65_RS19490	0.36	-0.3
4,219,320	+		DZA65_RS19490	0.36	+0.0
4,219,320	+		DZA65_RS19490	0.36	+0.7
4,219,320	+		DZA65_RS19490	0.36	-0.1
4,219,320	+		DZA65_RS19490	0.36	-0.7
4,219,320	+		DZA65_RS19490	0.36	+1.7
4,219,320	+		DZA65_RS19490	0.36	+0.7
4,219,320	+		DZA65_RS19490	0.36	+0.4
4,219,320	+		DZA65_RS19490	0.36	+0.5
4,219,320	+		DZA65_RS19490	0.36	+0.2
4,219,320	+		DZA65_RS19490	0.36	-0.0
4,219,320	+		DZA65_RS19490	0.36	+0.9
4,219,320	+		DZA65_RS19490	0.36	-1.1
4,219,321	-		DZA65_RS19490	0.36	+0.7
4,219,321	-		DZA65_RS19490	0.36	-0.3
4,219,321	-		DZA65_RS19490	0.36	-0.3
4,219,321	-		DZA65_RS19490	0.36	-0.9
4,219,321	-		DZA65_RS19490	0.36	+1.1
4,219,321	-		DZA65_RS19490	0.36	+0.8
4,219,321	-		DZA65_RS19490	0.36	+0.1
4,219,321	-		DZA65_RS19490	0.36	+1.3
4,219,321	-		DZA65_RS19490	0.36	-0.6
4,219,321	-		DZA65_RS19490	0.36	-0.7
4,219,321	-		DZA65_RS19490	0.36	+0.4
4,219,321	-		DZA65_RS19490	0.36	+1.5
4,219,321	-		DZA65_RS19490	0.36	+0.4
4,219,357	-		DZA65_RS19490	0.41	-0.0
4,219,451	-		DZA65_RS19490	0.54	-0.3
4,219,456	+		DZA65_RS19490	0.55	-0.0
4,219,457	-		DZA65_RS19490	0.55	+0.4
4,219,457	-		DZA65_RS19490	0.55	-0.7
4,219,457	-		DZA65_RS19490	0.55	+1.4
4,219,457	-		DZA65_RS19490	0.55	+0.1
4,219,457	-		DZA65_RS19490	0.55	+0.3
4,219,481	+		DZA65_RS19490	0.59	-0.0
4,219,482	-		DZA65_RS19490	0.59	-1.8
4,219,509	+		DZA65_RS19490	0.63	+0.3
4,219,509	+		DZA65_RS19490	0.63	+0.7
4,219,509	+		DZA65_RS19490	0.63	+1.0
4,219,509	+		DZA65_RS19490	0.63	+0.7
4,219,509	+		DZA65_RS19490	0.63	+0.4
4,219,509	+		DZA65_RS19490	0.63	+1.7
4,219,510	-		DZA65_RS19490	0.63	-0.5
4,219,510	-		DZA65_RS19490	0.63	-0.3
4,219,510	-		DZA65_RS19490	0.63	-0.7
4,219,510	-		DZA65_RS19490	0.63	-1.9
4,219,510	-		DZA65_RS19490	0.63	-1.5
4,219,512	+		DZA65_RS19490	0.63	+0.7
4,219,513	-		DZA65_RS19490	0.63	-0.3
4,219,513	-		DZA65_RS19490	0.63	+1.0
4,219,513	-		DZA65_RS19490	0.63	+0.6
4,219,513	-		DZA65_RS19490	0.63	-0.4
4,219,513	-		DZA65_RS19490	0.63	+0.3
4,219,598	+		DZA65_RS19490	0.75	-0.0
4,219,599	-				+0.7
4,219,599	-		DZA65_RS19490	0.75	+0.7
4,219,599	-		DZA65_RS19490	0.75	-0.6
4,219,599	-		DZA65_RS19490	0.75	-0.7
4,219,599	-		DZA65_RS19490	0.75	-0.7
4,219,760	-				+0.4
4,219,761	+				-2.3
4,219,761	+				-2.7
4,219,761	+				-0.9
4,219,761	+				+0.7
4,219,761	+				+0.7
4,219,761	+				-0.9
4,219,761	+				+1.2
4,219,761	+				-1.7
4,219,762	-				-0.5
4,219,762	-				+0.3
4,219,762	-				+0.7
4,219,762	-				-0.0
4,219,762	-				-0.7
4,219,762	-				-0.4
4,219,762	-				-0.9
4,219,762	-				+1.0
4,219,762	-				+0.9
4,219,789	-				-1.1
4,219,839	+				-0.7
4,219,840	-				+0.4
4,219,840	-				+0.2
4,219,840	-				-0.2
4,219,840	-				+1.2
4,219,874	+				-0.2
4,219,875	-				-0.3
4,219,899	+				-0.1
4,219,900	-				-0.3
4,219,900	-				+0.5
4,219,940	+				-0.2
4,219,941	-				-1.7
4,219,950	+				+0.2
4,219,950	+				-0.2
4,219,950	+				+1.1
4,219,951	-				+1.1
4,219,951	-				-1.1
4,219,951	-				+2.2
4,219,951	-				-0.7
4,219,951	-				-0.2
4,219,951	-				+0.4
4,219,953	+				+0.4
4,219,967	+				+0.2
4,219,968	-				-0.2
4,219,969	+				+0.4
4,219,988	+				+0.2
4,219,989	-				-0.5
4,219,992	+				-0.9
4,219,992	+				+1.1
4,219,993	-				-0.1
4,220,005	-				-1.0
4,220,023	+				+0.7
4,220,024	-				-0.5
4,220,024	-				+0.6
4,220,035	-				+1.9
4,220,035	-				+0.1
4,220,035	-				+1.4
4,220,049	+				-0.3
4,220,051	+				-0.5
4,220,051	+				+2.8
4,220,051	+				-0.1
4,220,052	-				-0.1
4,220,052	-				+0.3
4,220,068	-				-1.8
4,220,102	+				+0.8
4,220,102	+				+0.3
4,220,103	-				+0.8
4,220,103	-				-0.6
4,220,113	+				+0.7
4,220,113	+				+1.1
4,220,113	+				+0.2
4,220,116	+				-0.3
4,220,117	-				+0.7
4,220,117	-				-2.9
4,220,122	+				+1.3
4,220,139	+				-0.6
4,220,172	+				+0.3
4,220,212	+				-0.5
4,220,212	+				-1.3
4,220,212	+				+0.7
4,220,216	+				+1.3
4,220,216	+				-1.0
4,220,220	+				-0.1
4,220,220	+				+0.4
4,220,290	+				-0.2
4,220,304	+				+0.3
4,220,304	+				-1.3
4,220,306	+				+0.4
4,220,310	+				-0.8
4,220,310	+				-1.3
4,220,310	+				+0.1
4,220,311	-				-0.3
4,220,632	+		DZA65_RS19495	0.41	-0.3
4,220,633	-		DZA65_RS19495	0.42	+1.1
4,220,634	+		DZA65_RS19495	0.42	-1.7
4,220,635	-		DZA65_RS19495	0.42	-0.6
4,220,635	-		DZA65_RS19495	0.42	-0.1