Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19015

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,111,684	-		DZA65_RS19010	0.35	+1.4
4,111,728	+		DZA65_RS19010	0.39	+0.8
4,111,728	+		DZA65_RS19010	0.39	+0.9
4,111,728	+		DZA65_RS19010	0.39	-1.2
4,111,728	+		DZA65_RS19010	0.39	+1.0
4,111,728	+		DZA65_RS19010	0.39	+0.6
4,111,728	+		DZA65_RS19010	0.39	+1.9
4,111,728	+		DZA65_RS19010	0.39	-0.2
4,111,728	+		DZA65_RS19010	0.39	-0.5
4,111,728	+		DZA65_RS19010	0.39	-0.6
4,111,728	+		DZA65_RS19010	0.39	-0.6
4,111,729	-		DZA65_RS19010	0.39	+1.6
4,111,729	-		DZA65_RS19010	0.39	+0.2
4,111,729	-		DZA65_RS19010	0.39	+0.1
4,111,729	-				-1.4
4,111,928	+		DZA65_RS19010	0.53	-1.0
4,111,929	-		DZA65_RS19010	0.54	+1.5
4,111,946	+		DZA65_RS19010	0.55	+0.1
4,111,946	+		DZA65_RS19010	0.55	+0.2
4,111,946	+		DZA65_RS19010	0.55	-0.3
4,111,946	+		DZA65_RS19010	0.55	-0.3
4,111,948	+		DZA65_RS19010	0.55	-0.3
4,111,949	-		DZA65_RS19010	0.55	+0.9
4,112,059	+		DZA65_RS19010	0.63	-0.3
4,112,060	-		DZA65_RS19010	0.63	+0.3
4,112,068	+		DZA65_RS19010	0.64	+0.4
4,112,069	-		DZA65_RS19010	0.64	-1.0
4,112,099	+		DZA65_RS19010	0.66	+3.2
4,112,099	+		DZA65_RS19010	0.66	+0.1
4,112,099	+		DZA65_RS19010	0.66	+2.8
4,112,099	+		DZA65_RS19010	0.66	+1.6
4,112,099	+		DZA65_RS19010	0.66	-0.4
4,112,099	+		DZA65_RS19010	0.66	+0.3
4,112,100	-		DZA65_RS19010	0.66	+0.5
4,112,100	-		DZA65_RS19010	0.66	-1.7
4,112,100	-		DZA65_RS19010	0.66	-0.7
4,112,100	-		DZA65_RS19010	0.66	+0.6
4,112,100	-		DZA65_RS19010	0.66	+1.0
4,112,100	-		DZA65_RS19010	0.66	+0.6
4,112,100	-		DZA65_RS19010	0.66	-0.4
4,112,100	-		DZA65_RS19010	0.66	-0.4
4,112,114	+		DZA65_RS19010	0.67	-0.1
4,112,114	+		DZA65_RS19010	0.67	-0.8
4,112,115	-		DZA65_RS19010	0.67	-1.4
4,112,115	-		DZA65_RS19010	0.67	-1.2
4,112,115	-		DZA65_RS19010	0.67	-1.7
4,112,119	+		DZA65_RS19010	0.68	-0.0
4,112,119	+		DZA65_RS19010	0.68	+0.2
4,112,119	+		DZA65_RS19010	0.68	-1.2
4,112,119	+		DZA65_RS19010	0.68	-0.0
4,112,120	-		DZA65_RS19010	0.68	-1.2
4,112,135	+		DZA65_RS19010	0.69	-1.7
4,112,136	-		DZA65_RS19010	0.69	+0.6
4,112,147	-		DZA65_RS19010	0.70	+0.6
4,112,147	-		DZA65_RS19010	0.70	+2.3
4,112,181	+		DZA65_RS19010	0.72	+0.6
4,112,182	-		DZA65_RS19010	0.72	-1.0
4,112,182	-		DZA65_RS19010	0.72	-1.7
4,112,255	+		DZA65_RS19010	0.78	-0.1
4,112,255	+		DZA65_RS19010	0.78	+2.7
4,112,255	+		DZA65_RS19010	0.78	+0.7
4,112,255	+		DZA65_RS19010	0.78	-1.1
4,112,255	+		DZA65_RS19010	0.78	-0.5
4,112,255	+		DZA65_RS19010	0.78	+0.3
4,112,255	+		DZA65_RS19010	0.78	-1.7
4,112,255	+		DZA65_RS19010	0.78	+0.2
4,112,255	+		DZA65_RS19010	0.78	+1.0
4,112,255	+		DZA65_RS19010	0.78	+0.6
4,112,256	-		DZA65_RS19010	0.78	+0.0
4,112,256	-		DZA65_RS19010	0.78	-1.1
4,112,256	-		DZA65_RS19010	0.78	+0.1
4,112,256	-		DZA65_RS19010	0.78	-2.2
4,112,256	-		DZA65_RS19010	0.78	+0.2
4,112,256	-		DZA65_RS19010	0.78	+0.5
4,112,256	-		DZA65_RS19010	0.78	+0.5
4,112,256	-		DZA65_RS19010	0.78	-0.9
4,112,363	-		DZA65_RS19010	0.86	+1.6
4,112,420	+				-1.2
4,112,420	+				-1.5
4,112,420	+				-1.0
4,112,420	+				-0.4
4,112,421	-				+0.5
4,112,421	-				-0.9
4,112,421	-				+0.6
4,112,421	-				-0.4
4,112,421	-				-0.7
4,112,421	-				+1.4
4,112,437	+				-2.4
4,112,438	-				-0.4
4,112,456	-				+1.7
4,112,462	+				-0.2
4,112,462	+				+0.8
4,112,462	+				-0.7
4,112,463	-				+0.0
4,112,463	-				-1.7
4,112,463	-				-1.5
4,112,463	-				-0.6
4,112,463	-				-0.4
4,112,463	-				+1.2
4,112,463	-				+0.5
4,112,463	-				-0.4
4,112,463	-				+0.8
4,112,552	+				-0.4
4,112,553	-				+0.4
4,112,568	+				-1.0
4,112,568	+				-0.5
4,112,568	+				-0.5
4,112,568	+				+0.2
4,112,568	+				+2.2
4,112,568	+				+1.4
4,112,568	+				-1.8
4,112,568	+				-2.2
4,112,568	+				-1.2
4,112,568	+				-0.7
4,112,568	+				-0.2
4,112,569	-				-0.2
4,112,569	-				-1.0
4,112,569	-				-1.7
4,112,569	-				-0.4
4,112,569	-				+0.3
4,112,571	+				+0.1
4,112,572	-				+1.4
4,112,572	-				-0.2
4,112,590	-				-0.1
4,112,609	+				-2.7
4,112,610	-				+0.6
4,112,610	-				-1.7
4,112,633	+				+0.9
4,112,634	-				+0.3
4,112,642	+				-1.0
4,112,643	-				-1.7
4,112,643	-				-0.4
4,112,643	-				-2.0
4,112,647	+				+0.3
4,112,647	+				-1.3
4,112,648	-				+0.5
4,112,651	+				+1.3
4,112,651	+				-1.8
4,112,652	-				+0.7
4,112,652	-				+0.1
4,112,680	+				+0.6
4,112,680	+				-0.4
4,112,681	-				-0.5
4,112,681	-				-1.2
4,112,681	-				+0.1
4,112,688	+				+1.6
4,112,689	-				+1.4
4,112,689	-				+0.0
4,112,693	+				-1.0
4,112,693	+				-0.1
4,112,693	+				+0.6
4,112,693	+				+0.3
4,112,693	+				-0.7
4,112,693	+				+1.0
4,112,694	-				-0.4
4,112,694	-				-1.0
4,112,694	-				+1.0
4,112,694	-				-3.0
4,112,694	-				+0.4
4,112,694	-				-0.6
4,112,694	-				-1.4
4,112,694	-				+0.0
4,112,697	+				-0.6
4,112,697	+				-0.2
4,112,697	+				-0.5
4,112,697	+				-1.7
4,112,697	+				+0.1
4,112,698	-				+0.9
4,112,698	-				-0.0
4,112,698	-				+1.5
4,112,784	+		DZA65_RS19015	0.13	+2.2
4,112,784	+		DZA65_RS19015	0.13	-0.4
4,112,785	-		DZA65_RS19015	0.13	-0.7
4,112,785	-		DZA65_RS19015	0.13	-1.2
4,112,910	-		DZA65_RS19015	0.27	-0.3
4,112,910	-		DZA65_RS19015	0.27	-2.0
4,112,956	+		DZA65_RS19015	0.33	+0.2
4,112,956	+		DZA65_RS19015	0.33	+0.3
4,112,957	-		DZA65_RS19015	0.33	+1.2
4,112,961	+		DZA65_RS19015	0.33	+0.6
4,112,977	-		DZA65_RS19015	0.35	+0.0
4,112,977	-		DZA65_RS19015	0.35	-0.0
4,113,015	-		DZA65_RS19015	0.40	+0.9
4,113,101	+		DZA65_RS19015	0.50	+0.5
4,113,101	+		DZA65_RS19015	0.50	+1.2
4,113,102	-		DZA65_RS19015	0.50	+1.0
4,113,146	-		DZA65_RS19015	0.55	+0.2
4,113,146	-		DZA65_RS19015	0.55	+1.0
4,113,251	+		DZA65_RS19015	0.67	+1.0
4,113,252	-		DZA65_RS19015	0.67	-1.1
4,113,252	-		DZA65_RS19015	0.67	-0.7
4,113,252	-		DZA65_RS19015	0.67	+1.6
4,113,252	-		DZA65_RS19015	0.67	+0.2
4,113,260	+		DZA65_RS19015	0.68	-0.2
4,113,260	+		DZA65_RS19015	0.68	+0.0
4,113,261	-		DZA65_RS19015	0.68	+0.7
4,113,261	-		DZA65_RS19015	0.68	-0.6
4,113,261	-		DZA65_RS19015	0.68	+2.0
4,113,261	-		DZA65_RS19015	0.68	-1.9
4,113,313	+		DZA65_RS19015	0.74	+1.1
4,113,313	+		DZA65_RS19015	0.74	-1.2
4,113,313	+		DZA65_RS19015	0.74	-0.4
4,113,314	-		DZA65_RS19015	0.75	+0.4
4,113,314	-		DZA65_RS19015	0.75	-2.2
4,113,314	-		DZA65_RS19015	0.75	+0.6
4,113,316	+		DZA65_RS19015	0.75	-0.4
4,113,316	+		DZA65_RS19015	0.75	+0.5
4,113,316	+		DZA65_RS19015	0.75	-2.3
4,113,316	+		DZA65_RS19015	0.75	-2.3
4,113,316	+		DZA65_RS19015	0.75	+0.4
4,113,316	+		DZA65_RS19015	0.75	-1.4
4,113,316	+		DZA65_RS19015	0.75	-2.4
4,113,316	+		DZA65_RS19015	0.75	-0.6
4,113,316	+		DZA65_RS19015	0.75	-0.0
4,113,316	+				-1.0
4,113,317	-		DZA65_RS19015	0.75	-0.1
4,113,317	-		DZA65_RS19015	0.75	+0.9
4,113,317	-		DZA65_RS19015	0.75	-0.1
4,113,317	-		DZA65_RS19015	0.75	+0.6
4,113,317	-		DZA65_RS19015	0.75	-1.2
4,113,317	-		DZA65_RS19015	0.75	+0.8
4,113,317	-		DZA65_RS19015	0.75	+0.1
4,113,317	-		DZA65_RS19015	0.75	-0.7
4,113,317	-		DZA65_RS19015	0.75	+1.5
4,113,317	-		DZA65_RS19015	0.75	-0.8
4,113,317	-		DZA65_RS19015	0.75	-0.2
4,113,409	+		DZA65_RS19015	0.86	+0.5
4,113,483	+				-0.6
4,113,483	+				+0.2
4,113,483	+				+0.1
4,113,484	-				+1.4
4,113,484	-				-0.9
4,113,514	+				-1.5
4,113,514	+				-0.4
4,113,515	-				-0.4
4,113,515	-				+0.8
4,113,519	+				+1.0
4,113,519	+				-1.7
4,113,519	+				+0.6
4,113,519	+				-0.9
4,113,520	-				+0.2
4,113,520	-				-0.1
4,113,520	-				-0.0
4,113,520	-				-1.9
4,113,520	-				-1.3
4,113,520	-				-2.1
4,113,523	+				+0.4
4,113,523	+				-0.7
4,113,523	+				-0.4
4,113,523	+				+0.2
4,113,523	+				+1.6
4,113,523	+				-0.9
4,113,523	+				-0.6
4,113,524	-				-0.0
4,113,636	+		DZA65_RS19020	0.17	+0.3
4,113,636	+		DZA65_RS19020	0.17	+0.2
4,113,636	+		DZA65_RS19020	0.17	+1.1
4,113,636	+		DZA65_RS19020	0.17	+1.6
4,113,637	-		DZA65_RS19020	0.18	-0.7
4,113,637	-		DZA65_RS19020	0.18	-0.8
4,113,660	+		DZA65_RS19020	0.22	-1.2
4,113,660	+		DZA65_RS19020	0.22	-0.6
4,113,669	-		DZA65_RS19020	0.23	-1.4
4,113,669	-		DZA65_RS19020	0.23	-1.4
4,113,669	-		DZA65_RS19020	0.23	+0.8
4,113,710	+		DZA65_RS19020	0.31	-1.9
4,113,710	+		DZA65_RS19020	0.31	-0.4
4,113,710	+		DZA65_RS19020	0.31	+0.1
4,113,710	+		DZA65_RS19020	0.31	+0.4
4,113,711	-		DZA65_RS19020	0.31	-0.4
4,113,711	-		DZA65_RS19020	0.31	-0.7
4,113,711	-		DZA65_RS19020	0.31	-0.4
4,113,711	-		DZA65_RS19020	0.31	-0.4
4,113,711	-		DZA65_RS19020	0.31	-0.8
4,113,774	+		DZA65_RS19020	0.42	-0.1
4,113,839	+		DZA65_RS19020	0.54	+0.6
4,113,839	+		DZA65_RS19020	0.54	-2.5
4,113,839	+		DZA65_RS19020	0.54	-0.7
4,113,839	+		DZA65_RS19020	0.54	+1.0
4,113,839	+		DZA65_RS19020	0.54	-1.4
4,113,839	+		DZA65_RS19020	0.54	+0.2
4,113,840	-		DZA65_RS19020	0.54	+1.9
4,113,840	-		DZA65_RS19020	0.54	+0.3
4,113,840	-		DZA65_RS19020	0.54	-2.0
4,113,840	-		DZA65_RS19020	0.54	-0.8
4,113,840	-		DZA65_RS19020	0.54	-0.1
4,113,840	-		DZA65_RS19020	0.54	-1.4
4,113,898	+		DZA65_RS19020	0.64	+0.6
4,113,898	+		DZA65_RS19020	0.64	+1.1
4,113,898	+		DZA65_RS19020	0.64	-0.0
4,113,911	+		DZA65_RS19020	0.66	-0.4
4,113,911	+		DZA65_RS19020	0.66	-1.9
4,113,911	+		DZA65_RS19020	0.66	-1.4
4,113,911	+		DZA65_RS19020	0.66	-1.4
4,113,912	-		DZA65_RS19020	0.67	-0.9
4,113,912	-		DZA65_RS19020	0.67	-1.7
4,113,957	+		DZA65_RS19020	0.75	+0.1
4,113,957	+		DZA65_RS19020	0.75	-1.8
4,113,958	-		DZA65_RS19020	0.75	+0.6
4,113,959	+		DZA65_RS19020	0.75	-0.6
4,113,959	+		DZA65_RS19020	0.75	-0.0
4,113,959	+		DZA65_RS19020	0.75	-0.4
4,113,959	+		DZA65_RS19020	0.75	+0.1
4,113,959	+		DZA65_RS19020	0.75	-1.9
4,113,959	+		DZA65_RS19020	0.75	+0.3
4,113,960	-		DZA65_RS19020	0.75	-0.7
4,114,110	+				-1.7
4,114,110	+				+0.1
4,114,110	+				+1.1
4,114,110	+				+0.1
4,114,110	+				-0.4
4,114,110	+				+0.7
4,114,110	+				+0.5
4,114,110	+				+0.1
4,114,110	+				-1.2
4,114,110	+				+0.1
4,114,111	-				-0.2
4,114,111	-				-0.6
4,114,111	-				+0.3
4,114,111	-				-0.4
4,114,111	-				+0.1
4,114,111	-				+0.0
4,114,111	-				-0.4
4,114,112	+				+0.1
4,114,112	+				-0.9
4,114,112	+				+0.3
4,114,113	-				-2.4
4,114,113	-				-1.6
4,114,113	-				-1.4
4,114,158	-				-0.6
4,114,186	-				+0.2
4,114,336	+				-0.5
4,114,426	+				+0.3
4,114,433	+				-0.2
4,114,433	+				+1.5
4,114,434	-				-0.2
4,114,441	+				-1.8
4,114,448	+				+0.4
4,114,449	-				-1.5
4,114,449	-				-0.1
4,114,449	-				-0.0
4,114,463	+				+0.6
4,114,463	+				+1.2
4,114,463	+				-2.5
4,114,463	+				+1.4
4,114,463	+				-1.7
4,114,463	+				-0.5
4,114,464	-				+0.1
4,114,504	+				+1.1
4,114,504	+				+0.3
4,114,504	+				+1.6
4,114,504	+				+0.5
4,114,504	+				-0.2
4,114,504	+				+1.6
4,114,504	+				-1.1
4,114,504	+				-0.1
4,114,505	-				-1.6
4,114,505	-				+0.1
4,114,505	-				+0.6
4,114,505	-				+0.4