Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18520

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,990,631	-				+0.4
3,990,645	+				-1.4
3,990,645	+				-0.3
3,990,645	+				+0.4
3,990,645	+				-0.2
3,990,645	+				+0.6
3,990,645	+				+0.2
3,990,645	+				-1.4
3,990,645	+				-0.2
3,990,646	-				+0.2
3,990,648	+				+0.9
3,990,656	+				+0.2
3,990,656	+				+0.9
3,990,657	-				+0.6
3,990,657	-				+2.2
3,990,657	-				-0.7
3,990,670	+				+1.2
3,990,671	-				-0.0
3,990,671	-				+1.6
3,990,671	-				+1.3
3,990,671	-				+0.0
3,990,676	+				-0.2
3,990,677	-				+0.4
3,990,677	-				+0.9
3,990,686	+				+0.1
3,990,686	+				+1.6
3,990,686	+				+0.1
3,990,687	-				-2.4
3,990,690	+				-0.7
3,991,034	+				+0.8
3,991,034	+				-0.0
3,991,034	+				-2.0
3,991,034	+				+1.0
3,991,035	-				+0.1
3,991,035	-				+0.3
3,991,035	-				-0.1
3,991,079	+		DZA65_RS18515	0.14	+0.0
3,991,079	+		DZA65_RS18515	0.14	+1.4
3,991,080	-		DZA65_RS18515	0.14	+0.9
3,991,080	-		DZA65_RS18515	0.14	-0.9
3,991,100	+		DZA65_RS18515	0.19	-0.6
3,991,100	+		DZA65_RS18515	0.19	-1.7
3,991,101	-		DZA65_RS18515	0.19	+0.6
3,991,101	-		DZA65_RS18515	0.19	-0.2
3,991,101	-		DZA65_RS18515	0.19	-0.2
3,991,101	-		DZA65_RS18515	0.19	-0.3
3,991,101	-		DZA65_RS18515	0.19	-1.6
3,991,101	-		DZA65_RS18515	0.19	+0.2
3,991,103	+		DZA65_RS18515	0.19	-2.6
3,991,103	+		DZA65_RS18515	0.19	-0.5
3,991,122	-		DZA65_RS18515	0.23	-0.6
3,991,128	-		DZA65_RS18515	0.25	+1.0
3,991,128	-		DZA65_RS18515	0.25	-1.1
3,991,177	+		DZA65_RS18515	0.36	-0.4
3,991,177	+		DZA65_RS18515	0.36	-1.1
3,991,178	-		DZA65_RS18515	0.36	+0.6
3,991,178	-		DZA65_RS18515	0.36	+1.1
3,991,220	+		DZA65_RS18515	0.45	+1.6
3,991,220	+		DZA65_RS18515	0.45	+0.4
3,991,221	-		DZA65_RS18515	0.45	+0.3
3,991,221	-		DZA65_RS18515	0.45	-0.1
3,991,221	-		DZA65_RS18515	0.45	+1.5
3,991,221	-		DZA65_RS18515	0.45	-0.6
3,991,221	-		DZA65_RS18515	0.45	-1.4
3,991,277	-		DZA65_RS18515	0.57	-0.4
3,991,470	+				+0.3
3,991,470	+				-0.4
3,991,476	+				-1.2
3,991,476	+				-0.5
3,991,477	-				-1.6
3,991,487	+				-3.2
3,991,487	+				-0.1
3,991,487	+				-0.1
3,991,487	+				-0.4
3,991,488	-				-1.0
3,991,494	-				-2.0
3,991,494	-				-1.3
3,991,548	+				-2.4
3,991,548	+				-1.3
3,991,548	+				-0.1
3,991,548	+				+0.9
3,991,549	-				-0.9
3,991,552	+				-2.7
3,991,553	-				+2.5
3,991,637	-		DZA65_RS18520	0.17	+0.3
3,991,732	+		DZA65_RS18520	0.29	+0.3
3,991,732	+		DZA65_RS18520	0.29	-0.6
3,991,732	+		DZA65_RS18520	0.29	-0.6
3,991,732	+		DZA65_RS18520	0.29	+0.1
3,991,732	+		DZA65_RS18520	0.29	+0.2
3,991,732	+		DZA65_RS18520	0.29	+0.0
3,991,775	+		DZA65_RS18520	0.35	-0.7
3,991,775	+		DZA65_RS18520	0.35	+0.6
3,991,775	+		DZA65_RS18520	0.35	+0.5
3,991,775	+		DZA65_RS18520	0.35	-0.7
3,991,775	+		DZA65_RS18520	0.35	+0.6
3,991,776	-		DZA65_RS18520	0.35	+0.1
3,991,776	-		DZA65_RS18520	0.35	-0.6
3,991,776	-		DZA65_RS18520	0.35	-0.7
3,991,776	-		DZA65_RS18520	0.35	+0.9
3,991,776	-		DZA65_RS18520	0.35	+1.1
3,991,858	+		DZA65_RS18520	0.45	+1.2
3,991,898	+		DZA65_RS18520	0.51	+0.4
3,991,899	-		DZA65_RS18520	0.51	+0.9
3,991,899	-		DZA65_RS18520	0.51	+3.1
3,991,910	+		DZA65_RS18520	0.52	-0.5
3,991,910	+		DZA65_RS18520	0.52	-0.4
3,991,910	+		DZA65_RS18520	0.52	+0.8
3,991,910	+		DZA65_RS18520	0.52	-0.0
3,991,911	-		DZA65_RS18520	0.52	+0.4
3,991,911	-		DZA65_RS18520	0.52	+0.0
3,991,911	-		DZA65_RS18520	0.52	+1.9
3,991,911	-		DZA65_RS18520	0.52	-0.6
3,991,911	-		DZA65_RS18520	0.52	-0.8
3,992,056	+		DZA65_RS18520	0.71	-0.0
3,992,056	+		DZA65_RS18520	0.71	+0.6
3,992,056	+		DZA65_RS18520	0.71	+1.4
3,992,056	+		DZA65_RS18520	0.71	-1.6
3,992,056	+		DZA65_RS18520	0.71	+0.1
3,992,056	+		DZA65_RS18520	0.71	-0.3
3,992,056	+		DZA65_RS18520	0.71	+0.1
3,992,057	-		DZA65_RS18520	0.71	+0.5
3,992,057	-		DZA65_RS18520	0.71	+1.0
3,992,057	-		DZA65_RS18520	0.71	-1.0
3,992,057	-		DZA65_RS18520	0.71	-0.5
3,992,057	-		DZA65_RS18520	0.71	-0.8
3,992,057	-		DZA65_RS18520	0.71	+0.0
3,992,057	-		DZA65_RS18520	0.71	+0.4
3,992,057	-		DZA65_RS18520	0.71	-1.2
3,992,057	-		DZA65_RS18520	0.71	-0.1
3,992,057	-		DZA65_RS18520	0.71	+0.5
3,992,057	-		DZA65_RS18520	0.71	+0.4
3,992,057	-		DZA65_RS18520	0.71	+1.2
3,992,057	-		DZA65_RS18520	0.71	-0.9
3,992,057	-		DZA65_RS18520	0.71	+1.8
3,992,143	+		DZA65_RS18520	0.83	+0.1
3,992,143	+		DZA65_RS18520	0.83	+0.1
3,992,144	-		DZA65_RS18520	0.83	-1.7
3,992,156	+		DZA65_RS18520	0.84	+0.2
3,992,157	-		DZA65_RS18520	0.84	+0.7
3,992,157	-		DZA65_RS18520	0.84	+3.3
3,992,192	-		DZA65_RS18520	0.89	-0.4
3,992,229	+				-0.4
3,992,229	+				+1.3
3,992,229	+				+0.3
3,992,229	+				+0.0
3,992,229	+				+0.7
3,992,229	+				-1.6
3,992,229	+				-0.4
3,992,229	+				+0.9
3,992,229	+				-0.1
3,992,230	-				-0.4
3,992,230	-				+1.0
3,992,230	-				-0.4
3,992,230	-				+0.3
3,992,230	-				+0.3
3,992,239	+				-0.1
3,992,239	+				+1.0
3,992,239	+				+2.9
3,992,240	-				-0.6
3,992,240	-				+1.4
3,992,256	+				+1.6
3,992,256	+				+1.5
3,992,256	+				-1.7
3,992,256	+				-0.3
3,992,257	-				-0.6
3,992,257	-				-0.2
3,992,257	-				+1.9
3,992,336	-				-0.3
3,992,407	-				-0.0
3,992,444	+				-2.7
3,992,444	+				+0.3
3,992,444	+				+0.1
3,992,444	+				+1.6
3,992,445	-				+0.6
3,992,445	-				+0.8
3,992,467	-				-2.2
3,992,490	+				+0.6
3,992,490	+				-0.4
3,992,491	-				-1.2
3,992,621	+		DZA65_RS18525	0.51	-0.5
3,992,622	-		DZA65_RS18525	0.51	+0.3
3,992,632	+		DZA65_RS18525	0.54	+0.9
3,992,674	+		DZA65_RS18525	0.67	-0.9
3,992,674	+		DZA65_RS18525	0.67	+1.3
3,992,674	+		DZA65_RS18525	0.67	-1.8
3,992,674	+		DZA65_RS18525	0.67	+0.9
3,992,675	-		DZA65_RS18525	0.68	-0.9
3,992,683	+		DZA65_RS18525	0.70	-0.1
3,992,684	-		DZA65_RS18525	0.70	+0.5
3,992,763	+				+0.3
3,992,763	+				-1.2
3,992,764	-				+1.6
3,992,788	+				+2.4
3,992,788	+				-1.6
3,992,789	-				-0.2
3,992,789	-				+1.1
3,992,870	+				+0.9
3,992,870	+				-2.6
3,992,871	-				+0.0
3,992,951	+		DZA65_RS18530	0.11	+0.0
3,992,968	+		DZA65_RS18530	0.13	+0.7
3,992,969	-		DZA65_RS18530	0.13	+1.3
3,992,969	-		DZA65_RS18530	0.13	+1.8
3,993,013	+		DZA65_RS18530	0.16	-0.5
3,993,013	+		DZA65_RS18530	0.16	+0.1
3,993,166	+		DZA65_RS18530	0.26	+1.5
3,993,167	-		DZA65_RS18530	0.26	+2.2
3,993,167	-		DZA65_RS18530	0.26	+0.2
3,993,170	+		DZA65_RS18530	0.27	-0.6
3,993,170	+		DZA65_RS18530	0.27	-0.3
3,993,171	-		DZA65_RS18530	0.27	+0.7
3,993,171	-		DZA65_RS18530	0.27	+1.4
3,993,171	-		DZA65_RS18530	0.27	+0.1
3,993,203	+		DZA65_RS18530	0.29	+0.8
3,993,204	-		DZA65_RS18530	0.29	+1.4
3,993,204	-		DZA65_RS18530	0.29	+0.3
3,993,204	-		DZA65_RS18530	0.29	+0.1
3,993,204	-		DZA65_RS18530	0.29	+2.1
3,993,204	-		DZA65_RS18530	0.29	+0.1
3,993,204	-		DZA65_RS18530	0.29	+1.3
3,993,204	-		DZA65_RS18530	0.29	-0.0
3,993,204	-		DZA65_RS18530	0.29	-0.1
3,993,204	-		DZA65_RS18530	0.29	-0.8
3,993,204	-		DZA65_RS18530	0.29	+0.0
3,993,238	+		DZA65_RS18530	0.31	-0.2
3,993,238	+		DZA65_RS18530	0.31	+0.6
3,993,238	+		DZA65_RS18530	0.31	-1.2
3,993,238	+		DZA65_RS18530	0.31	+0.6
3,993,239	-		DZA65_RS18530	0.31	+0.4
3,993,239	-		DZA65_RS18530	0.31	+0.1
3,993,239	-		DZA65_RS18530	0.31	-0.7
3,993,239	-		DZA65_RS18530	0.31	+1.1
3,993,239	-		DZA65_RS18530	0.31	-1.0
3,993,239	-		DZA65_RS18530	0.31	-1.0
3,993,239	-		DZA65_RS18530	0.31	-0.4
3,993,241	+		DZA65_RS18530	0.32	+0.6
3,993,241	+		DZA65_RS18530	0.32	+1.9
3,993,242	-		DZA65_RS18530	0.32	+1.6
3,993,242	-		DZA65_RS18530	0.32	-0.4
3,993,242	-		DZA65_RS18530	0.32	-0.3
3,993,242	-		DZA65_RS18530	0.32	+0.7
3,993,242	-		DZA65_RS18530	0.32	-1.7
3,993,242	-		DZA65_RS18530	0.32	-1.8
3,993,242	-		DZA65_RS18530	0.32	+0.2
3,993,244	+		DZA65_RS18530	0.32	+0.0