Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18405

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,964,675	-		DZA65_RS18395	0.89	-1.6
3,964,703	+				+0.0
3,964,703	+				+2.5
3,964,765	+				+1.1
3,964,766	-				-1.6
3,964,996	+		DZA65_RS18400	0.25	-0.3
3,965,024	+		DZA65_RS18400	0.29	-0.4
3,965,098	-		DZA65_RS18400	0.39	-0.7
3,965,098	-		DZA65_RS18400	0.39	-0.5
3,965,289	+		DZA65_RS18400	0.65	+0.0
3,965,306	-		DZA65_RS18400	0.68	-2.9
3,965,460	-		DZA65_RS18400	0.89	+2.2
3,965,527	+				-0.4
3,965,532	-				+3.3
3,965,545	-				-0.6
3,965,545	-				+0.7
3,965,547	+				-0.7
3,965,547	+				+0.1
3,965,547	+				-0.7
3,965,547	+				-0.4
3,965,548	-				-0.1
3,965,548	-				+0.5
3,965,548	-				+0.3
3,965,548	-				-1.9
3,965,548	-				-0.4
3,965,554	+				-1.0
3,965,554	+				-0.1
3,965,555	-				+0.7
3,965,555	-				-0.4
3,965,560	+				+0.7
3,965,560	+				-0.1
3,965,560	+				-0.2
3,965,560	+				-1.6
3,965,560	+				-1.6
3,965,560	+				+1.4
3,965,560	+				+0.4
3,965,560	+				-0.2
3,965,561	-				-0.7
3,965,561	-				+1.0
3,965,561	-				+0.0
3,965,561	-				+0.8
3,965,561	-				-0.2
3,965,561	-				+0.4
3,965,561	-				+0.3
3,965,561	-				+0.7
3,965,573	+				+0.1
3,965,573	+				+0.3
3,965,573	+				+0.9
3,965,573	+				-0.4
3,965,573	+				-2.0
3,965,573	+				+0.4
3,965,573	+				+0.6
3,965,574	-				-0.5
3,965,574	-				+0.3
3,965,969	+		DZA65_RS18405	0.13	-1.4
3,965,969	+		DZA65_RS18405	0.13	-0.2
3,965,969	+		DZA65_RS18405	0.13	-0.5
3,965,969	+		DZA65_RS18405	0.13	-0.2
3,965,969	+		DZA65_RS18405	0.13	-2.6
3,965,969	+		DZA65_RS18405	0.13	-1.5
3,965,970	-		DZA65_RS18405	0.13	-1.0
3,965,970	-		DZA65_RS18405	0.13	+0.6
3,965,970	-		DZA65_RS18405	0.13	+0.0
3,965,970	-		DZA65_RS18405	0.13	+2.6
3,965,986	-		DZA65_RS18405	0.14	+0.6
3,966,079	+		DZA65_RS18405	0.18	-0.1
3,966,079	+		DZA65_RS18405	0.18	+1.0
3,966,079	+		DZA65_RS18405	0.18	-0.3
3,966,080	-		DZA65_RS18405	0.18	+2.0
3,966,080	-		DZA65_RS18405	0.18	-0.4
3,966,082	+		DZA65_RS18405	0.18	+1.3
3,966,082	+		DZA65_RS18405	0.18	-0.6
3,966,082	+		DZA65_RS18405	0.18	+0.8
3,966,082	+		DZA65_RS18405	0.18	-0.4
3,966,173	+		DZA65_RS18405	0.22	+0.0
3,966,174	-		DZA65_RS18405	0.22	-1.4
3,966,174	-				+2.2
3,966,174	-		DZA65_RS18405	0.22	-0.4
3,966,176	+		DZA65_RS18405	0.22	+0.5
3,966,209	+		DZA65_RS18405	0.23	-1.7
3,966,210	-		DZA65_RS18405	0.23	-1.7
3,966,234	+		DZA65_RS18405	0.24	-2.0
3,966,365	-		DZA65_RS18405	0.29	+0.2
3,966,365	-				-1.4
3,966,365	-		DZA65_RS18405	0.29	-0.6
3,966,472	+		DZA65_RS18405	0.34	-0.4
3,966,473	-		DZA65_RS18405	0.34	-2.0
3,966,473	-		DZA65_RS18405	0.34	-1.0
3,966,473	-		DZA65_RS18405	0.34	-0.1
3,966,473	-		DZA65_RS18405	0.34	-2.6
3,966,473	-		DZA65_RS18405	0.34	-1.7
3,966,874	+		DZA65_RS18405	0.50	+1.7
3,966,874	+		DZA65_RS18405	0.50	+0.3
3,966,874	+		DZA65_RS18405	0.50	-0.5
3,966,874	+		DZA65_RS18405	0.50	+0.9
3,966,874	+		DZA65_RS18405	0.50	-0.1
3,966,874	+		DZA65_RS18405	0.50	+0.0
3,966,874	+		DZA65_RS18405	0.50	-2.7
3,966,874	+		DZA65_RS18405	0.50	-1.1
3,966,874	+		DZA65_RS18405	0.50	-2.6
3,966,875	-				+0.0
3,966,875	-		DZA65_RS18405	0.50	-1.0
3,966,875	-		DZA65_RS18405	0.50	-1.2
3,966,875	-		DZA65_RS18405	0.50	-1.2
3,966,875	-		DZA65_RS18405	0.50	+1.6
3,966,916	+		DZA65_RS18405	0.52	-0.3
3,966,917	-				-0.4
3,966,917	-		DZA65_RS18405	0.52	-0.2
3,966,967	+				+2.9
3,966,967	+		DZA65_RS18405	0.54	-1.0
3,966,967	+		DZA65_RS18405	0.54	-2.2
3,966,967	+		DZA65_RS18405	0.54	+0.9
3,966,967	+		DZA65_RS18405	0.54	-0.1
3,966,968	-		DZA65_RS18405	0.54	-2.4
3,966,968	-		DZA65_RS18405	0.54	-2.2
3,966,968	-		DZA65_RS18405	0.54	+0.3
3,966,968	-		DZA65_RS18405	0.54	-1.3
3,966,968	-		DZA65_RS18405	0.54	+1.4
3,967,003	+		DZA65_RS18405	0.55	+0.4
3,967,003	+		DZA65_RS18405	0.55	+1.0
3,967,003	+		DZA65_RS18405	0.55	-1.0
3,967,004	-		DZA65_RS18405	0.55	+1.0
3,967,004	-		DZA65_RS18405	0.55	-0.3
3,967,010	+		DZA65_RS18405	0.55	+0.4
3,967,010	+		DZA65_RS18405	0.55	-0.3
3,967,010	+		DZA65_RS18405	0.55	+0.7
3,967,010	+		DZA65_RS18405	0.55	-1.4
3,967,010	+		DZA65_RS18405	0.55	-1.9
3,967,011	-				-0.4
3,967,011	-		DZA65_RS18405	0.55	-0.2
3,967,011	-		DZA65_RS18405	0.55	+0.6
3,967,011	-		DZA65_RS18405	0.55	-1.4
3,967,011	-				-1.4
3,967,011	-		DZA65_RS18405	0.55	+0.4
3,967,058	+		DZA65_RS18405	0.57	-0.5
3,967,058	+		DZA65_RS18405	0.57	-2.2
3,967,058	+		DZA65_RS18405	0.57	-1.5
3,967,058	+				-1.4
3,967,059	-		DZA65_RS18405	0.57	+0.6
3,967,059	-		DZA65_RS18405	0.57	+1.4
3,967,059	-		DZA65_RS18405	0.57	-0.4
3,967,059	-		DZA65_RS18405	0.57	+0.2
3,967,059	-		DZA65_RS18405	0.57	-0.6
3,967,059	-		DZA65_RS18405	0.57	-0.1
3,967,201	+		DZA65_RS18405	0.63	-1.5
3,967,201	+		DZA65_RS18405	0.63	+0.1
3,967,201	+		DZA65_RS18405	0.63	-0.4
3,967,201	+		DZA65_RS18405	0.63	-1.4
3,967,201	+		DZA65_RS18405	0.63	-0.4
3,967,201	+		DZA65_RS18405	0.63	+0.2
3,967,201	+				-1.0
3,967,201	+		DZA65_RS18405	0.63	-2.0
3,967,201	+		DZA65_RS18405	0.63	-0.4
3,967,201	+		DZA65_RS18405	0.63	-0.1
3,967,201	+		DZA65_RS18405	0.63	+1.4
3,967,201	+		DZA65_RS18405	0.63	+1.2
3,967,202	-		DZA65_RS18405	0.63	-1.3
3,967,202	-		DZA65_RS18405	0.63	-2.0
3,967,202	-		DZA65_RS18405	0.63	+0.3
3,967,202	-		DZA65_RS18405	0.63	-2.4
3,967,202	-		DZA65_RS18405	0.63	-0.2
3,967,204	+		DZA65_RS18405	0.63	-0.1
3,967,204	+		DZA65_RS18405	0.63	-1.4
3,967,204	+		DZA65_RS18405	0.63	-0.3
3,967,204	+		DZA65_RS18405	0.63	-1.7
3,967,204	+		DZA65_RS18405	0.63	+0.1
3,967,205	-		DZA65_RS18405	0.63	+0.8
3,967,205	-		DZA65_RS18405	0.63	-1.2
3,967,265	-		DZA65_RS18405	0.66	+0.9
3,967,333	-		DZA65_RS18405	0.68	+0.3
3,967,333	-		DZA65_RS18405	0.68	+0.9
3,967,333	-		DZA65_RS18405	0.68	-0.9
3,967,486	-		DZA65_RS18405	0.75	+0.5
3,967,649	-		DZA65_RS18405	0.81	-2.0
3,967,649	-		DZA65_RS18405	0.81	-1.4
3,967,649	-		DZA65_RS18405	0.81	-1.4
3,967,685	+		DZA65_RS18405	0.83	-1.4
3,967,686	-		DZA65_RS18405	0.83	-0.5
3,967,789	+		DZA65_RS18405	0.87	-1.0
3,967,789	+		DZA65_RS18405	0.87	-0.2
3,967,790	-		DZA65_RS18405	0.87	+1.9
3,967,790	-		DZA65_RS18405	0.87	-0.2
3,967,790	-		DZA65_RS18405	0.87	+1.6
3,967,790	-		DZA65_RS18405	0.87	-1.4
3,967,790	-		DZA65_RS18405	0.87	-1.0
3,967,790	-		DZA65_RS18405	0.87	+0.1
3,967,802	+		DZA65_RS18405	0.87	-0.3
3,967,802	+		DZA65_RS18405	0.87	-2.2
3,967,802	+		DZA65_RS18405	0.87	-0.7
3,967,888	+				-1.0
3,967,888	+				+0.6
3,967,888	+				+0.0
3,967,888	+				-0.4
3,968,047	+				+0.3
3,968,047	+				+0.8
3,968,047	+				-2.0
3,968,047	+				-1.1
3,968,047	+				-0.7
3,968,048	-				-0.4
3,968,048	-				-2.3
3,968,048	-				-1.4
3,968,048	-				-1.0
3,968,048	-				+0.9
3,968,074	+				-1.0
3,968,156	+				-1.0
3,968,156	+				+0.6
3,968,156	+				-1.4
3,968,157	-				+1.6
3,968,157	-				-0.2
3,968,170	+				-2.0
3,968,170	+				-1.4
3,968,170	+				-0.2
3,968,171	-				+0.6
3,968,171	-				-0.4
3,968,171	-				-1.0
3,968,171	-				+0.1
3,968,175	+				+0.9
3,968,175	+				-1.9
3,968,175	+				-1.0
3,968,176	-				+0.7
3,968,176	-				+0.2
3,968,176	-				-1.7
3,968,176	-				-2.4
3,968,178	-				-1.7
3,968,202	+		DZA65_RS18410	0.11	+1.0
3,968,216	+		DZA65_RS18410	0.14	-1.4
3,968,216	+		DZA65_RS18410	0.14	+2.6
3,968,216	+		DZA65_RS18410	0.14	-1.0
3,968,216	+		DZA65_RS18410	0.14	-1.7
3,968,216	+		DZA65_RS18410	0.14	+0.8
3,968,216	+		DZA65_RS18410	0.14	-0.1
3,968,220	+		DZA65_RS18410	0.15	+0.6
3,968,220	+		DZA65_RS18410	0.15	-0.6
3,968,220	+		DZA65_RS18410	0.15	-1.6
3,968,245	+		DZA65_RS18410	0.21	-0.4
3,968,246	-		DZA65_RS18410	0.21	+2.7
3,968,260	+		DZA65_RS18410	0.25	-1.6
3,968,260	+		DZA65_RS18410	0.25	+0.1
3,968,289	+		DZA65_RS18410	0.31	+0.2
3,968,289	+		DZA65_RS18410	0.31	-2.0
3,968,289	+		DZA65_RS18410	0.31	-2.0
3,968,289	+		DZA65_RS18410	0.31	-1.0
3,968,289	+		DZA65_RS18410	0.31	+0.9
3,968,289	+		DZA65_RS18410	0.31	-1.6
3,968,289	+		DZA65_RS18410	0.31	-0.5
3,968,289	+		DZA65_RS18410	0.31	-1.3
3,968,290	-		DZA65_RS18410	0.32	-1.7
3,968,290	-		DZA65_RS18410	0.32	+0.6
3,968,290	-		DZA65_RS18410	0.32	+0.0
3,968,290	-		DZA65_RS18410	0.32	+0.8
3,968,290	-		DZA65_RS18410	0.32	+2.2
3,968,313	+		DZA65_RS18410	0.37	-0.5
3,968,458	-		DZA65_RS18410	0.71	-1.0
3,968,534	+		DZA65_RS18410	0.89	-0.6
3,968,534	+		DZA65_RS18410	0.89	-0.4
3,968,534	+		DZA65_RS18410	0.89	+0.9
3,968,534	+		DZA65_RS18410	0.89	-0.1
3,968,534	+		DZA65_RS18410	0.89	-0.4
3,968,534	+		DZA65_RS18410	0.89	-3.0
3,968,534	+		DZA65_RS18410	0.89	-0.6
3,968,534	+		DZA65_RS18410	0.89	-1.1
3,968,535	-		DZA65_RS18410	0.89	+0.4
3,968,535	-		DZA65_RS18410	0.89	-1.7
3,968,535	-		DZA65_RS18410	0.89	+0.5
3,968,535	-		DZA65_RS18410	0.89	+1.2
3,968,556	-				+0.1
3,968,556	-				-2.0
3,968,573	-				+0.0
3,968,573	-				+0.6
3,968,595	-				+0.3
3,968,659	+				-0.5
3,968,660	-				-0.4
3,968,706	-				+0.2
3,968,733	+				+0.6
3,968,734	-				-0.1
3,968,734	-				+0.7
3,968,734	-				+0.2
3,968,737	+				-0.1
3,968,737	+				-0.7
3,968,738	-				+1.2
3,968,801	+				+0.3
3,968,801	+				+0.1
3,968,819	+				-0.5
3,968,819	+				-1.4
3,968,820	-				-1.0
3,968,820	-				+0.6
3,968,820	-				+0.6
3,968,840	-				+0.2
3,968,862	+				-1.0
3,968,862	+				-0.8
3,968,862	+				-1.1
3,968,863	-				+0.2
3,968,863	-				+0.0
3,968,863	-				-0.7
3,968,863	-				+0.1
3,968,877	+				+0.0
3,968,877	+				+1.2
3,968,883	+				-0.1
3,968,888	+				+1.4
3,968,888	+				+2.3
3,968,889	-				+0.6
3,968,889	-				+0.1
3,968,940	+				+0.3
3,968,941	-				-1.2
3,968,941	-				+0.8
3,969,014	+				-1.1
3,969,014	+				+0.1
3,969,015	-				+0.4
3,969,015	-				+1.6
3,969,015	-				+0.2
3,969,015	-				-1.7
3,969,020	+				+1.0
3,969,020	+				-0.6