Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17640

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,799,294	+		DZA65_RS17635	0.27	-0.3
3,799,296	+		DZA65_RS17635	0.27	+0.3
3,799,296	+		DZA65_RS17635	0.27	-1.3
3,799,296	+		DZA65_RS17635	0.27	-0.3
3,799,296	+		DZA65_RS17635	0.27	+0.0
3,799,297	-		DZA65_RS17635	0.27	-0.1
3,799,297	-		DZA65_RS17635	0.27	-1.0
3,799,297	-		DZA65_RS17635	0.27	+0.1
3,799,297	-		DZA65_RS17635	0.27	-0.8
3,799,421	+		DZA65_RS17635	0.38	+0.9
3,799,422	-		DZA65_RS17635	0.38	+0.3
3,799,445	-		DZA65_RS17635	0.40	-1.8
3,799,471	-		DZA65_RS17635	0.43	-1.7
3,799,476	+		DZA65_RS17635	0.43	+0.5
3,799,508	+		DZA65_RS17635	0.46	-0.5
3,799,509	-		DZA65_RS17635	0.46	-0.0
3,799,514	+		DZA65_RS17635	0.46	+2.1
3,799,555	+		DZA65_RS17635	0.50	+0.3
3,799,559	-		DZA65_RS17635	0.50	+1.5
3,799,571	+		DZA65_RS17635	0.51	+0.3
3,799,574	+		DZA65_RS17635	0.52	+0.9
3,799,574	+		DZA65_RS17635	0.52	+0.5
3,799,578	+		DZA65_RS17635	0.52	+0.5
3,799,579	-		DZA65_RS17635	0.52	+0.2
3,799,589	-		DZA65_RS17635	0.53	-0.9
3,799,589	-		DZA65_RS17635	0.53	-1.5
3,799,591	+		DZA65_RS17635	0.53	+1.6
3,799,591	+		DZA65_RS17635	0.53	-0.6
3,799,597	+		DZA65_RS17635	0.54	-0.5
3,799,619	+		DZA65_RS17635	0.56	-1.1
3,799,639	+		DZA65_RS17635	0.58	+0.9
3,799,639	+		DZA65_RS17635	0.58	+0.3
3,799,655	-		DZA65_RS17635	0.59	+0.2
3,799,655	-		DZA65_RS17635	0.59	-0.8
3,799,686	+		DZA65_RS17635	0.62	-0.2
3,799,686	+		DZA65_RS17635	0.62	+0.7
3,799,725	+		DZA65_RS17635	0.65	+0.8
3,799,725	+		DZA65_RS17635	0.65	-0.4
3,799,726	-		DZA65_RS17635	0.65	+0.9
3,799,734	+		DZA65_RS17635	0.66	+0.7
3,799,734	+		DZA65_RS17635	0.66	-0.3
3,799,734	+		DZA65_RS17635	0.66	+2.3
3,799,735	-		DZA65_RS17635	0.66	+0.0
3,799,735	-		DZA65_RS17635	0.66	+1.3
3,799,770	+		DZA65_RS17635	0.69	+1.2
3,799,786	+		DZA65_RS17635	0.71	-0.1
3,799,801	+		DZA65_RS17635	0.72	-0.2
3,799,801	+		DZA65_RS17635	0.72	+0.5
3,799,841	+		DZA65_RS17635	0.76	-0.5
3,799,841	+		DZA65_RS17635	0.76	+0.8
3,799,842	-		DZA65_RS17635	0.76	-0.9
3,799,842	-		DZA65_RS17635	0.76	-0.9
3,799,927	+		DZA65_RS17635	0.83	-1.1
3,799,928	-		DZA65_RS17635	0.83	+0.1
3,799,929	+		DZA65_RS17635	0.83	-0.3
3,799,929	+		DZA65_RS17635	0.83	+3.6
3,799,930	-		DZA65_RS17635	0.84	+0.0
3,799,930	-		DZA65_RS17635	0.84	-1.4
3,799,930	-		DZA65_RS17635	0.84	-1.5
3,799,930	-		DZA65_RS17635	0.84	+2.3
3,799,960	+		DZA65_RS17635	0.86	+2.0
3,799,961	-		DZA65_RS17635	0.86	+1.2
3,799,962	+		DZA65_RS17635	0.86	-0.5
3,799,962	+		DZA65_RS17635	0.86	-1.3
3,799,963	-		DZA65_RS17635	0.87	-0.3
3,799,978	+		DZA65_RS17635	0.88	+0.4
3,799,978	+		DZA65_RS17635	0.88	-0.2
3,799,979	-		DZA65_RS17635	0.88	-0.2
3,799,979	-		DZA65_RS17635	0.88	+0.5
3,800,018	+				+0.7
3,800,018	+				-2.1
3,800,019	-				+0.3
3,800,019	-				+0.9
3,800,019	-				+0.3
3,800,022	+				-1.1
3,800,022	+				-1.7
3,800,022	+				-0.5
3,800,023	-				-0.5
3,800,050	+				-1.5
3,800,110	-				-0.2
3,800,110	-				+1.0
3,800,110	-				-0.1
3,800,110	-				+0.2
3,800,110	-				+0.5
3,800,154	+				-0.1
3,800,154	+				-1.1
3,800,231	+				-0.1
3,800,232	-				+1.0
3,800,236	+				-0.6
3,800,236	+				-0.4
3,800,236	+				-0.4
3,800,236	+				+0.1
3,800,248	+				+0.2
3,800,270	-				-0.0
3,800,343	+				+0.1
3,800,343	+				-0.6
3,800,343	+				+1.5
3,800,343	+				-0.5
3,800,343	+				-0.3
3,800,343	+				+1.5
3,800,343	+				-0.7
3,800,343	+				+1.1
3,800,343	+				-0.2
3,800,343	+				-0.2
3,800,343	+				-1.5
3,800,343	+				-0.8
3,800,343	+				+0.2
3,800,343	+				-0.3
3,800,344	-				+1.2
3,800,344	-				+0.3
3,800,344	-				-1.8
3,800,344	-				-1.5
3,800,344	-				-0.6
3,800,344	-				+0.5
3,800,344	-				-0.4
3,800,344	-				+0.8
3,800,344	-				+1.0
3,800,344	-				+0.9
3,800,344	-				-0.4
3,800,344	-				+0.9
3,800,344	-				+0.1
3,800,344	-				+0.3
3,800,344	-				-0.5
3,800,344	-				-0.6
3,800,347	+				+1.0
3,800,347	+				-0.2
3,800,347	+				-1.5
3,800,347	+				-1.3
3,800,347	+				+0.3
3,800,348	-				-0.1
3,800,348	-				-0.5
3,800,348	-				+0.1
3,800,348	-				+0.4
3,800,348	-				+1.4
3,800,348	-				+1.1
3,800,355	+				+1.0
3,800,355	+				+1.1
3,800,356	-				-0.1
3,800,356	-				-0.8
3,800,379	-		DZA65_RS17640	0.12	-1.3
3,800,388	-		DZA65_RS17640	0.13	+1.0
3,800,388	-		DZA65_RS17640	0.13	+2.2
3,800,388	-		DZA65_RS17640	0.13	-0.2
3,800,425	+		DZA65_RS17640	0.16	+0.1
3,800,452	+		DZA65_RS17640	0.18	-0.2
3,800,631	+		DZA65_RS17640	0.34	-0.5
3,800,631	+		DZA65_RS17640	0.34	-1.1
3,800,632	-		DZA65_RS17640	0.34	-0.0
3,800,632	-		DZA65_RS17640	0.34	-0.9
3,800,772	+		DZA65_RS17640	0.47	-1.1
3,800,773	-		DZA65_RS17640	0.47	+0.9
3,800,773	-		DZA65_RS17640	0.47	-0.1
3,800,792	-		DZA65_RS17640	0.48	-0.1
3,800,811	+		DZA65_RS17640	0.50	+0.8
3,800,811	+		DZA65_RS17640	0.50	-0.9
3,800,811	+		DZA65_RS17640	0.50	-0.0
3,800,812	-		DZA65_RS17640	0.50	-0.7
3,800,812	-		DZA65_RS17640	0.50	-0.7
3,800,835	-		DZA65_RS17640	0.52	+0.1
3,800,860	+		DZA65_RS17640	0.54	-0.7
3,800,860	+				+1.1
3,800,860	+		DZA65_RS17640	0.54	+0.7
3,800,860	+		DZA65_RS17640	0.54	+0.8
3,800,860	+		DZA65_RS17640	0.54	-0.9
3,800,860	+		DZA65_RS17640	0.54	+0.7
3,800,860	+		DZA65_RS17640	0.54	+0.3
3,800,860	+		DZA65_RS17640	0.54	+0.2
3,800,861	-		DZA65_RS17640	0.54	-0.5
3,800,861	-		DZA65_RS17640	0.54	+0.2
3,800,868	-		DZA65_RS17640	0.55	+0.9
3,800,871	+		DZA65_RS17640	0.55	+2.4
3,800,871	+		DZA65_RS17640	0.55	-0.1
3,800,872	-		DZA65_RS17640	0.55	+2.5
3,800,924	-		DZA65_RS17640	0.60	-0.4
3,800,980	+		DZA65_RS17640	0.65	+0.7
3,801,020	-		DZA65_RS17640	0.68	-1.1
3,801,072	+		DZA65_RS17640	0.73	+0.2
3,801,072	+		DZA65_RS17640	0.73	+0.1
3,801,072	+		DZA65_RS17640	0.73	-2.3
3,801,072	+		DZA65_RS17640	0.73	+3.0
3,801,072	+		DZA65_RS17640	0.73	+1.1
3,801,072	+		DZA65_RS17640	0.73	-0.2
3,801,072	+		DZA65_RS17640	0.73	+0.7
3,801,072	+		DZA65_RS17640	0.73	+0.1
3,801,072	+		DZA65_RS17640	0.73	+0.8
3,801,073	-		DZA65_RS17640	0.73	-2.5
3,801,073	-		DZA65_RS17640	0.73	+1.4
3,801,073	-		DZA65_RS17640	0.73	-0.7
3,801,073	-		DZA65_RS17640	0.73	+2.0
3,801,073	-		DZA65_RS17640	0.73	-2.5
3,801,073	-		DZA65_RS17640	0.73	+1.4
3,801,073	-		DZA65_RS17640	0.73	+1.1
3,801,073	-		DZA65_RS17640	0.73	+2.7
3,801,073	-		DZA65_RS17640	0.73	+1.3
3,801,073	-		DZA65_RS17640	0.73	+1.3
3,801,073	-		DZA65_RS17640	0.73	+0.2
3,801,076	+		DZA65_RS17640	0.73	-0.9
3,801,077	-		DZA65_RS17640	0.73	+0.5
3,801,077	-		DZA65_RS17640	0.73	+1.1
3,801,104	+		DZA65_RS17640	0.76	-0.7
3,801,105	-		DZA65_RS17640	0.76	-0.6
3,801,105	-		DZA65_RS17640	0.76	+0.9
3,801,105	-		DZA65_RS17640	0.76	-0.3
3,801,120	+		DZA65_RS17640	0.77	-0.4
3,801,120	+				+2.3
3,801,121	-		DZA65_RS17640	0.77	+0.4
3,801,121	-		DZA65_RS17640	0.77	+0.2
3,801,121	-		DZA65_RS17640	0.77	+1.4
3,801,121	-		DZA65_RS17640	0.77	-0.5
3,801,124	+		DZA65_RS17640	0.77	+0.1
3,801,124	+		DZA65_RS17640	0.77	-0.9
3,801,125	-		DZA65_RS17640	0.78	-1.6
3,801,126	+		DZA65_RS17640	0.78	-0.5
3,801,127	-				+2.1
3,801,128	+		DZA65_RS17640	0.78	-1.3
3,801,158	+				-1.1
3,801,219	-		DZA65_RS17640	0.86	-1.3
3,801,219	-		DZA65_RS17640	0.86	-0.5
3,801,253	+		DZA65_RS17640	0.89	+0.8
3,801,254	-		DZA65_RS17640	0.89	-0.2
3,801,254	-		DZA65_RS17640	0.89	+0.8
3,801,254	-		DZA65_RS17640	0.89	+1.5
3,801,254	-		DZA65_RS17640	0.89	+1.0
3,801,254	-		DZA65_RS17640	0.89	-0.2
3,801,254	-		DZA65_RS17640	0.89	-1.1
3,801,259	+		DZA65_RS17640	0.89	+0.1
3,801,260	-		DZA65_RS17640	0.89	+1.7
3,801,316	+				+0.2
3,801,317	-				+0.5
3,801,317	-				-0.5
3,801,317	-				+0.2
3,801,349	+				-0.5
3,801,349	+				+0.4
3,801,349	+				-0.6
3,801,349	+				-0.3
3,801,349	+				-1.4
3,801,349	+				-0.7
3,801,349	+				+0.5
3,801,349	+				+0.5
3,801,350	-				+0.5
3,801,350	-				+1.4
3,801,350	-				-0.5
3,801,350	-				-0.6
3,801,350	-				-1.5
3,801,350	-				-0.4
3,801,350	-				+0.3
3,801,350	-				-0.5
3,801,350	-				+0.3
3,801,350	-				-0.4
3,801,350	-				-1.5
3,801,350	-				+0.4
3,801,350	-				-1.8
3,801,350	-				+1.7
3,801,353	+				-1.8
3,801,353	+				-0.7
3,801,353	+				-1.1
3,801,353	+				+1.3
3,801,353	+				+0.3
3,801,353	+				+0.2
3,801,353	+				+1.1
3,801,354	-				+0.6
3,801,354	-				-1.3
3,801,354	-				-1.1
3,801,354	-				+0.8
3,801,354	-				+1.5
3,801,354	-				-1.1
3,801,354	-				+1.8
3,801,354	-				+2.0
3,801,354	-				-0.6
3,801,362	-				+0.8
3,801,364	+				-1.8
3,801,436	+				+1.2
3,801,436	+				-0.1
3,801,438	+				-0.3
3,801,439	-				+0.7
3,801,439	-				-0.3
3,801,439	-				-2.9
3,801,469	+				+0.5
3,801,469	+				+0.3
3,801,469	+				-1.8
3,801,469	+				+0.8
3,801,469	+				+0.5
3,801,469	+				-0.3
3,801,469	+				+0.5
3,801,469	+				+2.0
3,801,469	+				+0.0
3,801,469	+				-0.7
3,801,470	-				-1.9
3,801,470	-				-1.3
3,801,470	-				-2.3
3,801,470	-				-2.1
3,801,470	-				-2.1
3,801,470	-				-0.3
3,801,470	-				-2.3
3,801,471	+				+0.1
3,801,471	+				+1.3
3,801,471	+				-0.9
3,801,471	+				-2.3
3,801,471	+				-1.1
3,801,471	+				-0.3
3,801,471	+				+0.2
3,801,472	-				-1.3
3,801,472	-				-2.3
3,801,472	-				-1.8
3,801,472	-				-3.2
3,801,472	-				-2.8
3,801,472	-				-1.9
3,801,472	-				-0.5
3,801,472	-				-0.7
3,801,472	-				-0.8
3,801,472	-				-1.3
3,801,473	+				-1.8
3,801,473	+				+0.1
3,801,473	+				+0.0
3,801,474	-				-1.1
3,801,474	-				-0.5
3,801,474	-				-1.1
3,801,474	-				-2.7
3,801,508	+				-0.7
3,801,514	+				-0.1
3,801,514	+				-0.8
3,801,515	-				-0.2
3,801,515	-				-0.2
3,801,518	+				+0.7
3,801,518	+				-1.5
3,801,518	+				-0.9
3,801,518	+				-3.9
3,801,518	+				-0.9
3,801,518	+				+0.7
3,801,518	+				-1.5
3,801,518	+				+0.5
3,801,519	-				-0.4
3,801,519	-				-1.5
3,801,519	-				-3.9
3,801,519	-				-1.6
3,801,527	+				-1.8
3,801,528	-				+1.1
3,801,529	+				+1.0
3,801,530	-				-3.1
3,801,596	+				-0.3
3,801,621	+				+0.3
3,801,669	-				+1.1
3,801,669	-				-1.2
3,801,669	-				-2.7
3,801,669	-				-1.5
3,801,669	-				-0.9
3,801,706	+				-0.7
3,801,706	+				-0.3
3,801,717	-				-0.2
3,801,722	+				+0.8
3,801,722	+				-0.3
3,801,722	+				+0.9
3,801,723	-				-0.2
3,801,723	-				-0.7
3,801,728	-				-0.9
3,801,728	-				-2.7
3,801,728	-				-1.2
3,801,731	+				-0.2
3,801,732	-				-0.5
3,801,732	-				-1.1
3,801,732	-				-0.5
3,801,899	+				-1.8
3,801,899	+				-0.5
3,801,899	+				-0.1
3,801,900	-				-0.4
3,801,900	-				-1.1
3,801,900	-				-0.1
3,801,900	-				-1.3
3,801,900	-				-0.5
3,801,900	-				+0.3
3,801,900	-				-2.1
3,801,936	-				-0.3
3,801,969	+				+0.3
3,801,969	+				+1.0
3,802,090	-				+1.1
3,802,157	+				-0.4
3,802,158	-				-0.6
3,802,158	-				+1.0
3,802,158	-				+0.4
3,802,183	-				-1.0
3,802,225	+				-0.9
3,802,225	+				-2.6
3,802,225	+				-1.2
3,802,247	-				-1.6
3,802,247	-				-0.2
3,802,247	-				-0.2
3,802,292	-				-0.5
3,802,292	-				+0.1
3,802,301	+				-0.4
3,802,301	+				+1.5
3,802,301	+				-0.5
3,802,302	-				-0.7
3,802,302	-				-0.5
3,802,302	-				+2.4
3,802,359	+				+0.2
3,802,359	+				-0.0
3,802,359	+				-1.5
3,802,359	+				-1.5
3,802,359	+				-1.8
3,802,360	-				+1.0
3,802,360	-				+0.5
3,802,362	+				+1.5
3,802,363	-				+0.8
3,802,363	-				-0.8