Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17415

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,751,910	+		DZA65_RS17405	0.40	+0.5
3,751,911	-		DZA65_RS17405	0.41	-0.1
3,751,961	+				-1.1
3,751,961	+		DZA65_RS17405	0.52	-1.1
3,751,961	+		DZA65_RS17405	0.52	+0.5
3,751,962	-		DZA65_RS17405	0.52	+0.6
3,751,988	+		DZA65_RS17405	0.59	-1.5
3,751,988	+		DZA65_RS17405	0.59	+0.5
3,751,989	-				+1.1
3,751,992	-		DZA65_RS17405	0.59	-2.1
3,752,012	+		DZA65_RS17405	0.64	+0.8
3,752,012	+		DZA65_RS17405	0.64	-2.3
3,752,012	+		DZA65_RS17405	0.64	+0.5
3,752,012	+		DZA65_RS17405	0.64	+0.1
3,752,012	+		DZA65_RS17405	0.64	-0.5
3,752,013	-		DZA65_RS17405	0.64	+0.3
3,752,013	-		DZA65_RS17405	0.64	-0.8
3,752,013	-		DZA65_RS17405	0.64	-0.3
3,752,013	-		DZA65_RS17405	0.64	+0.7
3,752,013	-		DZA65_RS17405	0.64	+0.5
3,752,013	-		DZA65_RS17405	0.64	-0.7
3,752,015	+		DZA65_RS17405	0.65	-0.7
3,752,030	+		DZA65_RS17405	0.68	+0.5
3,752,031	-		DZA65_RS17405	0.69	+0.1
3,752,031	-		DZA65_RS17405	0.69	-1.4
3,752,064	+		DZA65_RS17405	0.76	-2.0
3,752,064	+		DZA65_RS17405	0.76	+0.5
3,752,076	+		DZA65_RS17405	0.79	-1.3
3,752,077	-		DZA65_RS17405	0.79	-0.1
3,752,096	+				+3.1
3,752,096	+		DZA65_RS17405	0.84	+0.9
3,752,174	+				+0.5
3,752,174	+				+0.8
3,752,174	+				+0.2
3,752,174	+				+0.4
3,752,174	+				-1.1
3,752,175	-				-0.5
3,752,175	-				-0.1
3,752,175	-				+0.0
3,752,175	-				-1.1
3,752,175	-				+1.2
3,752,185	+				-0.6
3,752,185	+				+0.9
3,752,185	+				-0.7
3,752,186	-				+0.1
3,752,186	-				-1.1
3,752,191	+				+0.2
3,752,192	-				-0.2
3,752,192	-				+0.0
3,752,192	-				+0.2
3,752,267	+		DZA65_RS17410	0.19	-0.1
3,752,268	-		DZA65_RS17410	0.19	-1.1
3,752,268	-		DZA65_RS17410	0.19	+1.0
3,752,305	+		DZA65_RS17410	0.25	-0.7
3,752,306	-		DZA65_RS17410	0.25	-0.8
3,752,347	-		DZA65_RS17410	0.33	+0.7
3,752,347	-		DZA65_RS17410	0.33	+0.4
3,752,434	-		DZA65_RS17410	0.48	+0.8
3,752,434	-		DZA65_RS17410	0.48	+1.8
3,752,440	+		DZA65_RS17410	0.49	-0.1
3,752,468	+		DZA65_RS17410	0.54	+0.4
3,752,469	-		DZA65_RS17410	0.54	-0.6
3,752,469	-		DZA65_RS17410	0.54	+1.2
3,752,469	-		DZA65_RS17410	0.54	+1.2
3,752,469	-		DZA65_RS17410	0.54	+1.9
3,752,469	-		DZA65_RS17410	0.54	-0.9
3,752,469	-		DZA65_RS17410	0.54	+0.1
3,752,521	+		DZA65_RS17410	0.63	+1.5
3,752,522	-		DZA65_RS17410	0.63	-0.8
3,752,522	-		DZA65_RS17410	0.63	-1.0
3,752,554	+		DZA65_RS17410	0.69	-0.2
3,752,555	-		DZA65_RS17410	0.69	+0.5
3,752,569	+		DZA65_RS17410	0.72	-1.3
3,752,570	-		DZA65_RS17410	0.72	-0.4
3,752,616	+		DZA65_RS17410	0.80	-0.3
3,752,617	-		DZA65_RS17410	0.80	-0.3
3,752,617	-		DZA65_RS17410	0.80	+0.5
3,752,617	-		DZA65_RS17410	0.80	+1.9
3,752,623	+		DZA65_RS17410	0.81	+1.5
3,752,623	+		DZA65_RS17410	0.81	-0.1
3,752,623	+		DZA65_RS17410	0.81	-0.0
3,752,623	+		DZA65_RS17410	0.81	+1.8
3,752,623	+		DZA65_RS17410	0.81	+0.2
3,752,623	+		DZA65_RS17410	0.81	-1.3
3,752,624	-		DZA65_RS17410	0.81	-2.5
3,752,624	-		DZA65_RS17410	0.81	-2.3
3,752,624	-		DZA65_RS17410	0.81	-0.5
3,752,624	-		DZA65_RS17410	0.81	+3.6
3,752,624	-		DZA65_RS17410	0.81	-0.5
3,752,624	-		DZA65_RS17410	0.81	+0.3
3,752,624	-		DZA65_RS17410	0.81	+0.5
3,752,628	+		DZA65_RS17410	0.82	+0.4
3,752,628	+		DZA65_RS17410	0.82	+1.6
3,752,628	+		DZA65_RS17410	0.82	-0.8
3,752,629	-		DZA65_RS17410	0.82	-1.1
3,752,629	-		DZA65_RS17410	0.82	+0.1
3,752,629	-		DZA65_RS17410	0.82	-0.5
3,752,629	-		DZA65_RS17410	0.82	-0.2
3,752,724	+				+0.0
3,752,724	+				+0.5
3,752,724	+				-1.3
3,752,724	+				+1.0
3,752,724	+				-1.5
3,752,724	+				-0.2
3,752,725	-				+0.1
3,752,725	-				+1.0
3,752,725	-				+0.9
3,752,725	-				+0.1
3,752,725	-				-0.2
3,752,725	-				+0.9
3,752,725	-				-0.5
3,752,725	-				+0.6
3,752,828	-				+0.7
3,752,844	-				-1.9
3,752,852	-				-0.3
3,752,888	+				+1.3
3,752,888	+				-0.3
3,752,888	+				+1.9
3,752,888	+				-1.7
3,752,888	+				-1.1
3,752,889	-				+0.4
3,752,889	-				-1.4
3,752,889	-				+0.2
3,752,889	-				-0.5
3,752,957	+		DZA65_RS17415	0.65	+0.6
3,752,957	+		DZA65_RS17415	0.65	-1.6
3,752,962	+		DZA65_RS17415	0.71	-0.9
3,752,975	+		DZA65_RS17415	0.88	+0.1
3,753,000	-				+0.2
3,753,007	+				-0.8
3,753,007	+				-0.6
3,753,008	-				-2.0
3,753,008	-				-0.8
3,753,008	-				+0.7
3,753,008	-				-1.5
3,753,032	+				+0.8
3,753,033	-				-1.5
3,753,033	-				-1.1
3,753,146	-				-1.3
3,753,146	-				+1.3
3,753,152	+				-1.0
3,753,153	-				+1.5
3,753,191	-				-0.5
3,753,191	-				-2.1
3,753,191	-				-2.7
3,753,191	-				+0.1
3,753,191	-				+0.3
3,753,516	+				-1.9
3,753,558	+				-2.1
3,753,592	+				+0.4
3,753,615	+				+0.5
3,753,626	+				-0.4
3,753,626	+				+0.2
3,753,627	-				+0.2
3,753,627	-				-0.2
3,753,627	-				-0.8
3,753,673	-				+0.5
3,753,673	-				-1.4
3,753,673	-				+0.1
3,753,680	+				+0.5
3,753,687	+				-0.4
3,753,687	+				-0.5
3,753,687	+				-1.1
3,753,712	-		DZA65_RS17435	0.19	-2.9
3,753,719	+		DZA65_RS17435	0.23	-1.5
3,753,851	-				+1.0
3,753,882	-				-1.1
3,753,883	+				-0.5
3,753,884	-				+0.3
3,753,884	-				+2.1
3,753,884	-				-0.8
3,753,915	+				-2.8
3,753,940	-				+0.1