Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16755

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,612,975	+				+1.8
3,612,975	+				-2.4
3,612,975	+				-0.5
3,612,975	+				-1.1
3,612,975	+				-0.2
3,612,976	-				-0.1
3,612,976	-				+0.3
3,612,976	-				+0.1
3,612,976	-				-0.4
3,612,976	-				+0.2
3,612,976	-				+0.1
3,612,998	+				-1.4
3,612,998	+				-1.0
3,612,998	+				-0.4
3,612,998	+				-0.9
3,612,998	+				-0.1
3,612,998	+				-0.4
3,612,998	+				+0.9
3,612,998	+				-0.5
3,612,998	+				+0.8
3,612,998	+				-0.9
3,612,998	+				-1.1
3,612,998	+				+0.0
3,612,998	+				+1.5
3,612,998	+				+0.4
3,612,999	-				-2.1
3,612,999	-				+1.0
3,612,999	-				-0.0
3,612,999	-				+0.1
3,612,999	-				-1.1
3,612,999	-				+0.5
3,612,999	-				-1.7
3,612,999	-				-0.3
3,612,999	-				-1.6
3,612,999	-				-3.0
3,612,999	-				+0.6
3,612,999	-				+2.3
3,612,999	-				-1.1
3,612,999	-				-0.5
3,613,245	+		DZA65_RS16750	0.31	-0.5
3,613,245	+		DZA65_RS16750	0.31	-3.0
3,613,245	+		DZA65_RS16750	0.31	-0.5
3,613,245	+		DZA65_RS16750	0.31	-0.3
3,613,245	+		DZA65_RS16750	0.31	+0.3
3,613,246	-		DZA65_RS16750	0.31	+0.5
3,613,246	-		DZA65_RS16750	0.31	-1.4
3,613,246	-		DZA65_RS16750	0.31	+1.8
3,613,246	-		DZA65_RS16750	0.31	+1.3
3,613,246	-		DZA65_RS16750	0.31	+0.9
3,613,246	-		DZA65_RS16750	0.31	-2.4
3,613,246	-		DZA65_RS16750	0.31	-1.1
3,613,401	+		DZA65_RS16750	0.51	+0.4
3,613,402	-		DZA65_RS16750	0.51	+0.5
3,613,402	-		DZA65_RS16750	0.51	+2.0
3,613,402	-		DZA65_RS16750	0.51	+0.1
3,613,402	-		DZA65_RS16750	0.51	+0.0
3,613,402	-		DZA65_RS16750	0.51	-0.2
3,613,480	+		DZA65_RS16750	0.61	+0.9
3,613,481	-		DZA65_RS16750	0.61	-0.8
3,613,515	+		DZA65_RS16750	0.65	+0.2
3,613,515	+		DZA65_RS16750	0.65	+1.2
3,613,516	-		DZA65_RS16750	0.65	+0.5
3,613,537	+		DZA65_RS16750	0.68	+1.4
3,613,537	+		DZA65_RS16750	0.68	-0.5
3,613,537	+		DZA65_RS16750	0.68	+1.2
3,613,537	+		DZA65_RS16750	0.68	-1.4
3,613,537	+		DZA65_RS16750	0.68	-0.7
3,613,537	+		DZA65_RS16750	0.68	+0.5
3,613,537	+		DZA65_RS16750	0.68	+0.2
3,613,537	+		DZA65_RS16750	0.68	+1.0
3,613,537	+		DZA65_RS16750	0.68	+0.7
3,613,537	+		DZA65_RS16750	0.68	-0.3
3,613,537	+		DZA65_RS16750	0.68	-1.1
3,613,538	-		DZA65_RS16750	0.68	+0.1
3,613,538	-		DZA65_RS16750	0.68	+0.3
3,613,538	-		DZA65_RS16750	0.68	+0.3
3,613,538	-		DZA65_RS16750	0.68	-0.3
3,613,538	-		DZA65_RS16750	0.68	+0.0
3,613,538	-		DZA65_RS16750	0.68	-0.0
3,613,538	-		DZA65_RS16750	0.68	-0.9
3,613,538	-		DZA65_RS16750	0.68	-0.4
3,613,540	+		DZA65_RS16750	0.68	-0.1
3,613,540	+		DZA65_RS16750	0.68	-0.1
3,613,540	+		DZA65_RS16750	0.68	+0.7
3,613,540	+		DZA65_RS16750	0.68	+0.5
3,613,540	+		DZA65_RS16750	0.68	-0.3
3,613,541	-		DZA65_RS16750	0.68	-0.1
3,613,541	-		DZA65_RS16750	0.68	-0.1
3,613,541	-		DZA65_RS16750	0.68	-1.5
3,613,541	-		DZA65_RS16750	0.68	+0.1
3,613,541	-		DZA65_RS16750	0.68	-1.1
3,613,541	-		DZA65_RS16750	0.68	-0.1
3,613,541	-		DZA65_RS16750	0.68	+2.0
3,613,541	-		DZA65_RS16750	0.68	-0.5
3,613,566	-		DZA65_RS16750	0.72	-0.5
3,613,577	-		DZA65_RS16750	0.73	+2.3
3,613,577	-		DZA65_RS16750	0.73	-1.4
3,613,704	+		DZA65_RS16750	0.89	+0.1
3,613,704	+		DZA65_RS16750	0.89	-0.4
3,613,704	+		DZA65_RS16750	0.89	-1.9
3,613,704	+		DZA65_RS16750	0.89	-0.2
3,613,704	+		DZA65_RS16750	0.89	-1.1
3,613,704	+		DZA65_RS16750	0.89	+0.1
3,613,704	+				+1.5
3,613,705	-		DZA65_RS16750	0.89	-0.7
3,613,705	-		DZA65_RS16750	0.89	+0.5
3,613,788	+				+1.5
3,613,789	-				-0.3
3,613,813	+				-0.4
3,613,814	-				+0.1
3,613,814	-				-0.5
3,613,814	-				+1.6
3,613,885	-				-0.6
3,613,898	+				+0.1
3,614,068	+				-2.4
3,614,069	-				+0.2
3,614,069	-				+1.5
3,614,130	-		DZA65_RS16755	0.15	+0.5
3,614,130	-		DZA65_RS16755	0.15	+1.6
3,614,251	+		DZA65_RS16755	0.26	+0.4
3,614,279	+		DZA65_RS16755	0.28	+0.5
3,614,279	+		DZA65_RS16755	0.28	-2.5
3,614,279	+		DZA65_RS16755	0.28	-0.7
3,614,279	+		DZA65_RS16755	0.28	+0.1
3,614,279	+		DZA65_RS16755	0.28	+0.5
3,614,279	+		DZA65_RS16755	0.28	-0.5
3,614,280	-		DZA65_RS16755	0.28	-0.7
3,614,280	-		DZA65_RS16755	0.28	+0.2
3,614,280	-		DZA65_RS16755	0.28	-1.4
3,614,280	-		DZA65_RS16755	0.28	-0.3
3,614,280	-		DZA65_RS16755	0.28	+0.9
3,614,280	-		DZA65_RS16755	0.28	-2.7
3,614,280	-		DZA65_RS16755	0.28	-0.3
3,614,280	-		DZA65_RS16755	0.28	+1.0
3,614,331	+		DZA65_RS16755	0.33	+0.9
3,614,371	-		DZA65_RS16755	0.36	+0.3
3,614,371	-		DZA65_RS16755	0.36	-1.0
3,614,755	-		DZA65_RS16755	0.71	-0.5
3,614,815	-		DZA65_RS16755	0.76	+1.1
3,614,815	-		DZA65_RS16755	0.76	+1.1
3,614,815	-		DZA65_RS16755	0.76	-0.5
3,614,825	+		DZA65_RS16755	0.77	-1.7
3,614,838	-		DZA65_RS16755	0.78	+0.2
3,614,838	-		DZA65_RS16755	0.78	+1.3
3,614,846	+		DZA65_RS16755	0.79	+0.5
3,614,846	+		DZA65_RS16755	0.79	+0.1
3,614,855	+		DZA65_RS16755	0.80	-2.4
3,614,856	-		DZA65_RS16755	0.80	+2.0
3,614,856	-		DZA65_RS16755	0.80	+0.5
3,614,856	-		DZA65_RS16755	0.80	+0.5
3,614,933	+		DZA65_RS16755	0.86	+1.5
3,614,933	+		DZA65_RS16755	0.86	-0.4
3,614,933	+		DZA65_RS16755	0.86	+1.0
3,614,934	-		DZA65_RS16755	0.87	+1.7
3,614,968	-		DZA65_RS16755	0.90	-0.4
3,615,057	+				-0.2
3,615,057	+				+0.1
3,615,057	+				-1.0
3,615,057	+				-0.5
3,615,057	+				-0.8
3,615,057	+				-0.5
3,615,058	-				+0.7
3,615,058	-				-2.4
3,615,090	+				+0.2
3,615,091	-				-0.5
3,615,125	+				-0.0
3,615,137	+				-1.4
3,615,137	+				-0.5
3,615,141	+				-0.5
3,615,141	+				+1.0
3,615,142	-				-1.1
3,615,142	-				+0.8
3,615,142	-				-0.7
3,615,142	-				-2.4
3,615,142	-				+0.3
3,615,145	-				-1.2
3,615,145	-				+2.0
3,615,156	+				+0.6
3,615,157	-				+0.9
3,615,176	+				-0.7
3,615,177	-				-1.1
3,615,193	+				+0.2
3,615,193	+				+0.0
3,615,193	+				+0.5
3,615,194	-				-1.3
3,615,203	+				+1.2
3,615,204	-				-1.1
3,615,260	-				-0.5
3,615,313	+				-0.1
3,615,313	+				+0.5
3,615,314	-				-0.3
3,615,314	-				+1.5
3,615,336	+				+0.7
3,615,337	-				-1.5
3,615,337	-				-0.6
3,615,440	+		DZA65_RS16760	0.15	-1.5
3,615,440	+		DZA65_RS16760	0.15	+1.2
3,615,441	-		DZA65_RS16760	0.15	-0.5
3,615,441	-		DZA65_RS16760	0.15	+0.5
3,615,441	-		DZA65_RS16760	0.15	-0.4
3,615,441	-		DZA65_RS16760	0.15	+0.7
3,615,548	+		DZA65_RS16760	0.25	-0.1
3,615,548	+		DZA65_RS16760	0.25	-0.1
3,615,548	+		DZA65_RS16760	0.25	+0.1
3,615,548	+		DZA65_RS16760	0.25	+0.0
3,615,548	+		DZA65_RS16760	0.25	-1.3
3,615,548	+		DZA65_RS16760	0.25	+1.0
3,615,548	+		DZA65_RS16760	0.25	-1.0
3,615,549	-		DZA65_RS16760	0.25	-0.5
3,615,549	-		DZA65_RS16760	0.25	-0.5
3,615,549	-		DZA65_RS16760	0.25	+0.0
3,615,549	-		DZA65_RS16760	0.25	-0.3
3,615,549	-		DZA65_RS16760	0.25	-0.1
3,615,549	-		DZA65_RS16760	0.25	+0.0
3,615,549	-		DZA65_RS16760	0.25	-0.1
3,615,549	-		DZA65_RS16760	0.25	-0.8
3,615,582	-		DZA65_RS16760	0.29	-0.0
3,615,719	+		DZA65_RS16760	0.42	-0.3
3,615,719	+		DZA65_RS16760	0.42	-1.0
3,615,719	+		DZA65_RS16760	0.42	+0.3
3,615,719	+		DZA65_RS16760	0.42	-1.1
3,615,719	+		DZA65_RS16760	0.42	+0.0
3,615,720	-		DZA65_RS16760	0.42	-0.8
3,615,720	-		DZA65_RS16760	0.42	-0.6
3,615,720	-		DZA65_RS16760	0.42	+0.6
3,615,720	-		DZA65_RS16760	0.42	-0.1
3,615,720	-		DZA65_RS16760	0.42	-0.4
3,615,720	-		DZA65_RS16760	0.42	-1.4
3,615,720	-		DZA65_RS16760	0.42	-1.0
3,615,720	-		DZA65_RS16760	0.42	-2.5
3,615,720	-		DZA65_RS16760	0.42	+1.0
3,615,720	-		DZA65_RS16760	0.42	-0.3
3,615,797	-		DZA65_RS16760	0.49	-0.6
3,615,888	+		DZA65_RS16760	0.58	+0.8
3,615,888	+		DZA65_RS16760	0.58	+1.0
3,615,888	+		DZA65_RS16760	0.58	+0.9
3,615,889	-		DZA65_RS16760	0.58	-0.2
3,615,889	-		DZA65_RS16760	0.58	+0.6
3,616,035	+		DZA65_RS16760	0.72	+0.3
3,616,035	+		DZA65_RS16760	0.72	-1.1
3,616,035	+		DZA65_RS16760	0.72	-2.5
3,616,035	+		DZA65_RS16760	0.72	-0.5
3,616,035	+		DZA65_RS16760	0.72	+1.7
3,616,035	+		DZA65_RS16760	0.72	-0.0
3,616,035	+				-0.9
3,616,035	+		DZA65_RS16760	0.72	-0.7
3,616,036	-		DZA65_RS16760	0.72	+0.5
3,616,036	-		DZA65_RS16760	0.72	+0.5
3,616,036	-		DZA65_RS16760	0.72	+0.7
3,616,036	-		DZA65_RS16760	0.72	-1.5