Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16175

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,507,657	+		DZA65_RS16170	0.72	-1.6
3,507,658	-		DZA65_RS16170	0.72	+0.0
3,507,658	-		DZA65_RS16170	0.72	-1.0
3,507,658	-		DZA65_RS16170	0.72	-0.4
3,507,676	-		DZA65_RS16170	0.72	-1.3
3,507,676	-		DZA65_RS16170	0.72	+3.2
3,507,676	-		DZA65_RS16170	0.72	+0.4
3,507,676	-		DZA65_RS16170	0.72	+0.4
3,507,676	-		DZA65_RS16170	0.72	-0.6
3,507,676	-		DZA65_RS16170	0.72	-1.8
3,507,705	+		DZA65_RS16170	0.73	-1.2
3,507,731	+		DZA65_RS16170	0.74	-0.8
3,507,731	+		DZA65_RS16170	0.74	-0.6
3,507,935	+		DZA65_RS16170	0.81	+1.6
3,508,029	+		DZA65_RS16170	0.84	+0.3
3,508,029	+		DZA65_RS16170	0.84	-0.5
3,508,030	-		DZA65_RS16170	0.84	-0.6
3,508,030	-		DZA65_RS16170	0.84	-0.2
3,508,030	-		DZA65_RS16170	0.84	-0.5
3,508,030	-		DZA65_RS16170	0.84	-0.8
3,508,046	-		DZA65_RS16170	0.84	+2.0
3,508,050	+		DZA65_RS16170	0.84	-0.8
3,508,050	+		DZA65_RS16170	0.84	+0.1
3,508,050	+		DZA65_RS16170	0.84	-0.2
3,508,050	+		DZA65_RS16170	0.84	-1.2
3,508,050	+		DZA65_RS16170	0.84	-0.5
3,508,050	+		DZA65_RS16170	0.84	+0.8
3,508,050	+		DZA65_RS16170	0.84	-0.5
3,508,051	-		DZA65_RS16170	0.84	+0.6
3,508,051	-		DZA65_RS16170	0.84	-2.2
3,508,051	-		DZA65_RS16170	0.84	-1.3
3,508,051	-		DZA65_RS16170	0.84	-0.5
3,508,051	-		DZA65_RS16170	0.84	-0.1
3,508,051	-		DZA65_RS16170	0.84	-1.3
3,508,051	-		DZA65_RS16170	0.84	-0.6
3,508,051	-		DZA65_RS16170	0.84	+0.8
3,508,051	-		DZA65_RS16170	0.84	+0.6
3,508,051	-				+1.2
3,508,411	+				+0.1
3,508,411	+				-1.4
3,508,411	+				+0.0
3,508,434	+				+0.5
3,508,434	+				+0.2
3,508,434	+				+0.1
3,508,434	+				-0.8
3,508,434	+				+1.4
3,508,435	-				-3.3
3,508,435	-				+0.6
3,508,435	-				+1.1
3,508,435	-				-0.8
3,508,435	-				-0.6
3,508,435	-				-2.2
3,508,452	+				+0.3
3,508,452	+				-0.2
3,508,452	+				-2.2
3,508,452	+				-1.9
3,508,452	+				+0.1
3,508,452	+				-1.2
3,508,453	-				+0.1
3,508,453	-				-0.9
3,508,453	-				-1.2
3,508,511	+				-0.9
3,508,512	-				-0.3
3,508,512	-				-1.4
3,508,512	-				-0.3
3,508,551	-				-0.6
3,508,594	+				-0.5
3,508,606	+				+1.4
3,508,607	-				+0.4
3,508,676	+				-2.6
3,508,677	-				-0.2
3,508,677	-				-1.4
3,508,677	-				+0.5
3,508,677	-				+0.9
3,508,776	+		DZA65_RS16175	0.11	-0.9
3,508,776	+		DZA65_RS16175	0.11	-1.2
3,508,776	+		DZA65_RS16175	0.11	+0.4
3,508,776	+		DZA65_RS16175	0.11	+0.9
3,508,776	+		DZA65_RS16175	0.11	+0.4
3,508,776	+		DZA65_RS16175	0.11	+0.2
3,508,776	+		DZA65_RS16175	0.11	+0.0
3,508,776	+		DZA65_RS16175	0.11	+1.1
3,508,777	-		DZA65_RS16175	0.11	+0.4
3,508,777	-		DZA65_RS16175	0.11	+0.3
3,508,777	-		DZA65_RS16175	0.11	-0.9
3,508,777	-		DZA65_RS16175	0.11	-0.5
3,508,777	-		DZA65_RS16175	0.11	+1.0
3,508,777	-		DZA65_RS16175	0.11	-0.6
3,508,777	-		DZA65_RS16175	0.11	+0.0
3,508,844	+		DZA65_RS16175	0.16	-1.0
3,508,844	+		DZA65_RS16175	0.16	-2.0
3,508,844	+		DZA65_RS16175	0.16	-0.3
3,508,844	+		DZA65_RS16175	0.16	+0.4
3,508,844	+		DZA65_RS16175	0.16	-0.6
3,508,845	-		DZA65_RS16175	0.16	-2.6
3,509,010	+		DZA65_RS16175	0.28	-2.0
3,509,011	-		DZA65_RS16175	0.28	-0.1
3,509,094	+		DZA65_RS16175	0.34	-0.3
3,509,095	-		DZA65_RS16175	0.34	-0.9
3,509,095	-		DZA65_RS16175	0.34	+1.4
3,509,126	+		DZA65_RS16175	0.36	-0.7
3,509,127	-		DZA65_RS16175	0.36	-0.3
3,509,234	+		DZA65_RS16175	0.44	+0.4
3,509,240	+		DZA65_RS16175	0.44	-0.8
3,509,240	+		DZA65_RS16175	0.44	+0.1
3,509,241	-		DZA65_RS16175	0.44	+0.0
3,509,405	+		DZA65_RS16175	0.56	+0.7
3,509,406	-		DZA65_RS16175	0.56	+1.2
3,509,450	+		DZA65_RS16175	0.59	-0.6
3,509,496	+		DZA65_RS16175	0.63	-0.3
3,509,497	-		DZA65_RS16175	0.63	-0.7
3,509,602	+		DZA65_RS16175	0.70	-2.8
3,509,673	+		DZA65_RS16175	0.75	-1.5
3,509,673	+		DZA65_RS16175	0.75	+0.4
3,509,674	-		DZA65_RS16175	0.75	-2.8
3,509,690	-		DZA65_RS16175	0.76	-0.8
3,509,692	+		DZA65_RS16175	0.77	+0.6
3,509,693	-		DZA65_RS16175	0.77	-1.6
3,509,693	-		DZA65_RS16175	0.77	-1.9
3,509,702	-		DZA65_RS16175	0.77	+2.0
3,509,741	+		DZA65_RS16175	0.80	-0.6
3,509,741	+		DZA65_RS16175	0.80	-0.1
3,509,741	+		DZA65_RS16175	0.80	-1.2
3,509,741	+		DZA65_RS16175	0.80	-0.2
3,509,741	+		DZA65_RS16175	0.80	-0.2
3,509,816	-		DZA65_RS16175	0.85	-1.5
3,509,816	-		DZA65_RS16175	0.85	-0.7
3,509,825	+		DZA65_RS16175	0.86	+1.5
3,509,826	-		DZA65_RS16175	0.86	-0.8
3,509,916	+				+1.7
3,509,916	+				-0.6
3,509,916	+				-0.4
3,509,916	+				+0.4
3,509,916	+				-0.5
3,509,917	-				+1.4
3,509,917	-				+0.7
3,509,917	-				-1.2
3,509,922	+				-0.9
3,509,922	+				+1.2
3,509,923	-				+0.4
3,509,923	-				-0.3
3,509,923	-				-0.2
3,509,923	-				+0.1
3,509,923	-				+1.3
3,510,073	+				+0.7
3,510,137	-				+0.4
3,510,143	+				-0.7
3,510,143	+				+1.0
3,510,144	-				-0.3
3,510,203	+		DZA65_RS16180	0.13	-1.2
3,510,212	+		DZA65_RS16180	0.13	+0.2
3,510,250	+		DZA65_RS16180	0.16	+0.4
3,510,679	+		DZA65_RS16180	0.48	+0.8
3,510,679	+		DZA65_RS16180	0.48	+0.8
3,510,740	-		DZA65_RS16180	0.52	+0.0
3,510,840	+		DZA65_RS16180	0.60	-1.0
3,510,853	-		DZA65_RS16180	0.61	+0.1
3,510,892	-		DZA65_RS16180	0.64	-0.9