Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15890

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,449,697	+				-1.2
3,449,697	+		DZA65_RS15885	0.49	+1.0
3,449,697	+		DZA65_RS15885	0.49	+0.8
3,449,697	+		DZA65_RS15885	0.49	-0.3
3,449,698	-		DZA65_RS15885	0.49	+0.4
3,449,843	+		DZA65_RS15885	0.60	+0.2
3,449,843	+		DZA65_RS15885	0.60	-0.9
3,449,843	+		DZA65_RS15885	0.60	+0.5
3,449,843	+		DZA65_RS15885	0.60	-0.6
3,449,844	-		DZA65_RS15885	0.60	-1.2
3,449,844	-		DZA65_RS15885	0.60	+0.7
3,449,844	-		DZA65_RS15885	0.60	+0.2
3,449,844	-		DZA65_RS15885	0.60	+0.7
3,449,851	+		DZA65_RS15885	0.61	-0.5
3,449,851	+		DZA65_RS15885	0.61	-3.2
3,449,851	+		DZA65_RS15885	0.61	-0.2
3,449,852	-		DZA65_RS15885	0.61	-0.1
3,449,852	-		DZA65_RS15885	0.61	-0.3
3,449,852	-		DZA65_RS15885	0.61	-2.8
3,449,852	-		DZA65_RS15885	0.61	+0.7
3,449,852	-		DZA65_RS15885	0.61	+1.3
3,449,852	-		DZA65_RS15885	0.61	+1.1
3,449,852	-		DZA65_RS15885	0.61	+0.4
3,449,852	-		DZA65_RS15885	0.61	+0.4
3,449,852	-		DZA65_RS15885	0.61	-0.6
3,449,852	-		DZA65_RS15885	0.61	-1.6
3,449,862	+		DZA65_RS15885	0.61	-0.3
3,449,862	+		DZA65_RS15885	0.61	-2.2
3,449,862	+		DZA65_RS15885	0.61	-0.4
3,449,909	+		DZA65_RS15885	0.65	-0.8
3,449,909	+		DZA65_RS15885	0.65	-2.4
3,449,910	-		DZA65_RS15885	0.65	-1.2
3,449,910	-		DZA65_RS15885	0.65	-0.2
3,449,910	-		DZA65_RS15885	0.65	-2.1
3,449,910	-		DZA65_RS15885	0.65	+0.9
3,449,920	+		DZA65_RS15885	0.66	+0.9
3,450,003	+		DZA65_RS15885	0.72	-1.1
3,450,003	+		DZA65_RS15885	0.72	-0.2
3,450,026	+		DZA65_RS15885	0.73	+0.1
3,450,072	+				+0.4
3,450,072	+		DZA65_RS15885	0.77	+1.1
3,450,072	+		DZA65_RS15885	0.77	+0.9
3,450,072	+		DZA65_RS15885	0.77	+0.3
3,450,073	-				+0.4
3,450,073	-		DZA65_RS15885	0.77	+1.6
3,450,074	+		DZA65_RS15885	0.77	-1.1
3,450,074	+		DZA65_RS15885	0.77	-0.2
3,450,074	+		DZA65_RS15885	0.77	+0.4
3,450,074	+		DZA65_RS15885	0.77	-1.6
3,450,074	+		DZA65_RS15885	0.77	-0.3
3,450,074	+		DZA65_RS15885	0.77	-0.6
3,450,074	+		DZA65_RS15885	0.77	+0.2
3,450,074	+		DZA65_RS15885	0.77	+0.0
3,450,074	+		DZA65_RS15885	0.77	+1.0
3,450,074	+		DZA65_RS15885	0.77	-0.6
3,450,075	-		DZA65_RS15885	0.77	-0.8
3,450,075	-		DZA65_RS15885	0.77	+0.3
3,450,075	-		DZA65_RS15885	0.77	+1.8
3,450,075	-		DZA65_RS15885	0.77	-0.2
3,450,075	-		DZA65_RS15885	0.77	-0.6
3,450,075	-		DZA65_RS15885	0.77	+0.6
3,450,075	-		DZA65_RS15885	0.77	+0.4
3,450,075	-		DZA65_RS15885	0.77	+0.4
3,450,075	-		DZA65_RS15885	0.77	+0.9
3,450,075	-		DZA65_RS15885	0.77	+0.4
3,450,075	-		DZA65_RS15885	0.77	-0.0
3,450,075	-		DZA65_RS15885	0.77	-1.8
3,450,075	-		DZA65_RS15885	0.77	-0.6
3,450,075	-		DZA65_RS15885	0.77	+0.4
3,450,075	-		DZA65_RS15885	0.77	-1.2
3,450,075	-		DZA65_RS15885	0.77	+1.0
3,450,075	-		DZA65_RS15885	0.77	+2.9
3,450,075	-		DZA65_RS15885	0.77	+0.2
3,450,075	-		DZA65_RS15885	0.77	-1.5
3,450,076	+		DZA65_RS15885	0.77	+0.7
3,450,076	+		DZA65_RS15885	0.77	-3.2
3,450,076	+		DZA65_RS15885	0.77	+0.2
3,450,076	+		DZA65_RS15885	0.77	+0.3
3,450,076	+		DZA65_RS15885	0.77	+1.2
3,450,077	-		DZA65_RS15885	0.77	-1.7
3,450,077	-		DZA65_RS15885	0.77	+0.1
3,450,077	-		DZA65_RS15885	0.77	+0.1
3,450,131	+		DZA65_RS15885	0.81	-0.1
3,450,131	+		DZA65_RS15885	0.81	-0.6
3,450,132	-		DZA65_RS15885	0.81	+1.2
3,450,132	-		DZA65_RS15885	0.81	-0.3
3,450,132	-		DZA65_RS15885	0.81	+1.1
3,450,132	-		DZA65_RS15885	0.81	-0.1
3,450,305	+				+0.4
3,450,305	+				+0.6
3,450,414	+				+2.4
3,450,425	+				-0.1
3,450,428	-				-0.5
3,450,433	+				+0.4
3,450,433	+				+0.6
3,450,433	+				+0.5
3,450,434	-				-1.6
3,450,434	-				+2.0
3,450,434	-				-0.1
3,450,434	-				-0.9
3,450,437	+				+0.1
3,450,438	-				+1.2
3,450,438	-				-1.6
3,450,438	-				-0.1
3,450,466	+				+0.1
3,450,466	+				+0.1
3,450,467	-				-0.8
3,450,467	-				+0.0
3,450,511	+				+0.1
3,450,511	+				+2.0
3,450,535	+				-1.1
3,450,535	+				-1.2
3,450,535	+				-0.1
3,450,535	+				+0.0
3,450,536	-				+0.5
3,450,536	-				-1.2
3,450,538	+				-1.3
3,450,538	+				-0.4
3,450,538	+				-0.2
3,450,538	+				+0.7
3,450,538	+				+0.8
3,450,538	+				-0.5
3,450,539	-				+0.4
3,450,539	-				+0.5
3,450,539	-				-0.5
3,450,539	-				-0.2
3,450,539	-				+0.1
3,450,539	-				-0.4
3,450,555	+				-2.9
3,450,556	-				+1.0
3,450,556	-				-0.1
3,450,556	-				-1.0
3,450,556	-				+1.0
3,450,619	+				+1.2
3,450,649	+				+0.6
3,450,649	+				+0.2
3,450,649	+				-1.2
3,450,649	+				-1.2
3,450,650	-				+0.4
3,450,650	-				-0.3
3,450,650	-				-1.1
3,450,650	-				+0.2
3,450,650	-				+0.4
3,450,653	-				+0.4
3,450,677	+				-0.5
3,450,678	-				+0.5
3,450,698	+				+0.0
3,450,698	+				+1.0
3,450,698	+				+2.7
3,450,699	-				-0.4
3,450,699	-				-0.4
3,450,699	-				-0.2
3,450,699	-				+1.1
3,450,714	+				-1.5
3,450,715	-				+1.2
3,450,715	-				+1.7
3,450,725	+				-0.4
3,450,725	+				+0.5
3,450,725	+				-1.3
3,450,725	+				-0.2
3,450,725	+				+0.4
3,450,725	+				+1.1
3,450,726	-				-0.2
3,450,726	-				+0.4
3,450,726	-				-0.8
3,450,726	-				+0.7
3,450,726	-				-0.7
3,450,726	-				-2.0
3,450,726	-				+0.5
3,450,726	-				-1.8
3,450,726	-				+1.8
3,450,726	-				-0.6
3,450,726	-				-0.5
3,450,726	-				-0.7
3,450,727	+				-1.0
3,450,727	+				-0.0
3,450,727	+				+2.1
3,450,727	+				-0.5
3,450,727	+				-0.4
3,450,727	+				-0.3
3,450,727	+				-0.6
3,450,727	+				-1.2
3,450,727	+				+0.1
3,450,728	-				-0.9
3,450,728	-				+0.4
3,450,728	-				-0.2
3,450,728	-				-0.7
3,450,850	+		DZA65_RS15890	0.27	+0.7
3,450,850	+		DZA65_RS15890	0.27	-0.3
3,450,850	+		DZA65_RS15890	0.27	+0.4
3,450,850	+		DZA65_RS15890	0.27	-0.7
3,450,850	+		DZA65_RS15890	0.27	-1.9
3,450,850	+		DZA65_RS15890	0.27	+1.4
3,450,850	+		DZA65_RS15890	0.27	+0.7
3,450,850	+		DZA65_RS15890	0.27	-1.4
3,450,850	+		DZA65_RS15890	0.27	-1.7
3,450,850	+		DZA65_RS15890	0.27	-0.1
3,450,850	+		DZA65_RS15890	0.27	+1.3
3,450,851	-		DZA65_RS15890	0.27	-1.9
3,450,851	-		DZA65_RS15890	0.27	+0.2
3,450,851	-		DZA65_RS15890	0.27	+0.6
3,450,851	-		DZA65_RS15890	0.27	+0.7
3,450,851	-		DZA65_RS15890	0.27	-2.1
3,450,851	-		DZA65_RS15890	0.27	-1.2
3,450,851	-		DZA65_RS15890	0.27	+0.8
3,450,875	-		DZA65_RS15890	0.31	+0.7
3,450,891	+		DZA65_RS15890	0.34	-0.3
3,450,954	+		DZA65_RS15890	0.45	+0.2
3,450,954	+		DZA65_RS15890	0.45	+3.9
3,450,954	+		DZA65_RS15890	0.45	-1.4
3,450,954	+		DZA65_RS15890	0.45	-0.7
3,450,954	+		DZA65_RS15890	0.45	-1.9
3,450,955	-		DZA65_RS15890	0.45	+0.2
3,450,955	-		DZA65_RS15890	0.45	+1.3
3,450,955	-		DZA65_RS15890	0.45	+0.4
3,450,955	-		DZA65_RS15890	0.45	+1.4
3,450,981	-		DZA65_RS15890	0.49	+0.1
3,450,981	-		DZA65_RS15890	0.49	-0.6
3,450,983	+		DZA65_RS15890	0.50	-0.3
3,450,983	+		DZA65_RS15890	0.50	+2.0
3,450,983	+		DZA65_RS15890	0.50	-0.0
3,450,983	+		DZA65_RS15890	0.50	-0.0
3,450,984	-		DZA65_RS15890	0.50	+1.8
3,450,984	-		DZA65_RS15890	0.50	+0.6
3,450,984	-		DZA65_RS15890	0.50	+0.6
3,450,984	-		DZA65_RS15890	0.50	+0.7
3,450,984	-		DZA65_RS15890	0.50	-0.6
3,450,984	-		DZA65_RS15890	0.50	-0.3
3,450,984	-		DZA65_RS15890	0.50	-0.2
3,450,984	-		DZA65_RS15890	0.50	-0.5
3,450,984	-		DZA65_RS15890	0.50	-0.2
3,450,984	-		DZA65_RS15890	0.50	-2.9
3,450,984	-		DZA65_RS15890	0.50	-0.7
3,450,984	-		DZA65_RS15890	0.50	+0.1
3,450,994	-		DZA65_RS15890	0.52	+0.5
3,451,059	+		DZA65_RS15890	0.63	-1.2
3,451,059	+		DZA65_RS15890	0.63	+2.6
3,451,060	-		DZA65_RS15890	0.63	+1.5
3,451,060	-		DZA65_RS15890	0.63	-2.6
3,451,060	-		DZA65_RS15890	0.63	-2.2
3,451,063	+		DZA65_RS15890	0.63	+0.7
3,451,063	+		DZA65_RS15890	0.63	+0.1
3,451,064	-		DZA65_RS15890	0.64	+0.8
3,451,064	-		DZA65_RS15890	0.64	-1.4
3,451,064	-		DZA65_RS15890	0.64	+0.1
3,451,064	-		DZA65_RS15890	0.64	-0.7
3,451,064	-		DZA65_RS15890	0.64	+0.4
3,451,064	-		DZA65_RS15890	0.64	+0.3
3,451,064	-				-0.6
3,451,093	+		DZA65_RS15890	0.69	-0.4
3,451,094	-		DZA65_RS15890	0.69	+0.7
3,451,094	-		DZA65_RS15890	0.69	-0.0
3,451,094	-		DZA65_RS15890	0.69	-1.2
3,451,094	-		DZA65_RS15890	0.69	-2.6
3,451,117	+		DZA65_RS15890	0.73	+0.9
3,451,117	+		DZA65_RS15890	0.73	+0.6
3,451,117	+		DZA65_RS15890	0.73	+0.5
3,451,118	-		DZA65_RS15890	0.73	+3.2
3,451,118	-		DZA65_RS15890	0.73	+1.0
3,451,118	-		DZA65_RS15890	0.73	+0.1
3,451,148	-				-0.0
3,451,148	-		DZA65_RS15890	0.78	-2.6
3,451,179	+		DZA65_RS15890	0.83	-0.3
3,451,221	+				-0.3
3,451,221	+				-0.6
3,451,222	-				-0.5
3,451,222	-				+1.0
3,451,222	-				-0.6
3,451,228	-				-0.7
3,451,266	+				+0.4
3,451,267	-				-0.1
3,451,270	+				-3.1
3,451,271	-				-1.2
3,451,312	-				+0.2
3,451,312	-				+0.3
3,451,441	+		DZA65_RS15895	0.20	+0.1
3,451,442	-		DZA65_RS15895	0.20	-0.1
3,451,454	+		DZA65_RS15895	0.22	-0.1
3,451,455	-		DZA65_RS15895	0.22	+1.1
3,451,507	+		DZA65_RS15895	0.29	-0.9
3,451,508	-		DZA65_RS15895	0.29	+0.2
3,451,508	-		DZA65_RS15895	0.29	+0.2
3,451,531	+		DZA65_RS15895	0.32	+0.4
3,451,532	-		DZA65_RS15895	0.32	-1.6
3,451,532	-		DZA65_RS15895	0.32	+0.2
3,451,532	-		DZA65_RS15895	0.32	-0.1
3,451,584	+		DZA65_RS15895	0.39	-1.6
3,451,585	-				-0.0
3,451,591	-		DZA65_RS15895	0.40	+1.5
3,451,591	-		DZA65_RS15895	0.40	+0.1
3,451,626	+		DZA65_RS15895	0.45	+0.5
3,451,626	+		DZA65_RS15895	0.45	+0.4
3,451,627	-		DZA65_RS15895	0.45	+0.4
3,451,627	-		DZA65_RS15895	0.45	+0.5
3,451,675	-		DZA65_RS15895	0.51	-0.6
3,451,678	+		DZA65_RS15895	0.52	+0.1
3,451,678	+		DZA65_RS15895	0.52	-1.2
3,451,678	+		DZA65_RS15895	0.52	+0.3
3,451,678	+		DZA65_RS15895	0.52	-1.4
3,451,678	+		DZA65_RS15895	0.52	+0.7
3,451,678	+		DZA65_RS15895	0.52	+0.7
3,451,679	-		DZA65_RS15895	0.52	-0.6
3,451,679	-		DZA65_RS15895	0.52	-1.3
3,451,679	-		DZA65_RS15895	0.52	-0.5
3,451,691	+		DZA65_RS15895	0.53	-0.7
3,451,691	+		DZA65_RS15895	0.53	-0.1
3,451,691	+		DZA65_RS15895	0.53	-0.6
3,451,691	+		DZA65_RS15895	0.53	-0.8
3,451,692	-		DZA65_RS15895	0.53	-0.3
3,451,706	+		DZA65_RS15895	0.55	-0.6
3,451,707	-		DZA65_RS15895	0.55	-1.4
3,451,743	+		DZA65_RS15895	0.60	-1.9
3,451,744	-		DZA65_RS15895	0.60	+1.3
3,451,764	-		DZA65_RS15895	0.63	-0.5
3,451,766	+		DZA65_RS15895	0.63	-0.4
3,451,766	+		DZA65_RS15895	0.63	-0.6
3,451,766	+		DZA65_RS15895	0.63	-0.8
3,451,766	+		DZA65_RS15895	0.63	+0.5
3,451,766	+		DZA65_RS15895	0.63	-1.2
3,451,767	-		DZA65_RS15895	0.63	-0.5
3,451,767	-		DZA65_RS15895	0.63	-0.3
3,451,767	-		DZA65_RS15895	0.63	-1.6
3,451,767	-		DZA65_RS15895	0.63	+0.3
3,451,767	-		DZA65_RS15895	0.63	+0.4
3,451,767	-		DZA65_RS15895	0.63	+2.7
3,451,767	-		DZA65_RS15895	0.63	-0.9
3,451,767	-		DZA65_RS15895	0.63	+0.2
3,451,767	-		DZA65_RS15895	0.63	+0.3
3,451,770	+		DZA65_RS15895	0.64	+0.1
3,451,770	+		DZA65_RS15895	0.64	+0.4
3,451,770	+		DZA65_RS15895	0.64	-1.1
3,451,770	+		DZA65_RS15895	0.64	+0.3
3,451,770	+		DZA65_RS15895	0.64	-1.4
3,451,771	-		DZA65_RS15895	0.64	-0.5
3,451,771	-		DZA65_RS15895	0.64	-0.4
3,451,771	-		DZA65_RS15895	0.64	-1.8
3,451,776	+		DZA65_RS15895	0.65	+0.1
3,451,776	+		DZA65_RS15895	0.65	+1.1
3,451,776	+		DZA65_RS15895	0.65	-1.6
3,451,776	+		DZA65_RS15895	0.65	-0.2
3,451,776	+		DZA65_RS15895	0.65	+0.1
3,451,777	-		DZA65_RS15895	0.65	-1.0
3,451,777	-		DZA65_RS15895	0.65	-0.7
3,451,777	-		DZA65_RS15895	0.65	-1.1
3,451,777	-		DZA65_RS15895	0.65	-0.8
3,451,777	-		DZA65_RS15895	0.65	+0.6
3,451,777	-		DZA65_RS15895	0.65	-0.4
3,451,810	+		DZA65_RS15895	0.69	+0.8
3,451,810	+		DZA65_RS15895	0.69	+0.2
3,451,810	+		DZA65_RS15895	0.69	-1.2
3,451,811	-		DZA65_RS15895	0.69	-0.3
3,451,837	-		DZA65_RS15895	0.73	-0.0
3,451,837	-		DZA65_RS15895	0.73	-0.7
3,451,837	-		DZA65_RS15895	0.73	+0.2
3,451,837	-		DZA65_RS15895	0.73	-0.9
3,451,857	+		DZA65_RS15895	0.75	+0.1
3,451,860	+		DZA65_RS15895	0.76	-0.5
3,451,860	+				-0.2
3,451,860	+		DZA65_RS15895	0.76	-0.9
3,451,860	+		DZA65_RS15895	0.76	+0.1
3,451,860	+		DZA65_RS15895	0.76	+0.8
3,451,860	+		DZA65_RS15895	0.76	-0.3
3,451,861	-		DZA65_RS15895	0.76	+0.7
3,451,861	-		DZA65_RS15895	0.76	-0.1
3,451,861	-		DZA65_RS15895	0.76	+0.3
3,451,861	-		DZA65_RS15895	0.76	-1.2
3,451,861	-		DZA65_RS15895	0.76	-0.3
3,451,861	-		DZA65_RS15895	0.76	+1.2
3,451,966	+				+0.0
3,451,966	+				-1.0
3,451,966	+				-0.6
3,451,966	+				+0.4
3,451,966	+				+1.1
3,451,966	+				+1.2
3,451,966	+				-1.0
3,451,967	-				-0.6
3,451,967	-				-0.9
3,451,967	-				-1.9
3,451,967	-				-1.6
3,451,967	-				-0.1
3,451,967	-				+0.4
3,451,967	-				-1.2
3,451,967	-				-1.4
3,452,032	+				-0.6
3,452,033	-				-0.3
3,452,042	+				+1.6
3,452,042	+				-0.6
3,452,042	+				-0.2
3,452,042	+				+0.2
3,452,042	+				+1.3
3,452,043	-				-0.6
3,452,046	+				-0.7
3,452,047	-				-0.6
3,452,047	-				+1.4
3,452,047	-				-1.2
3,452,047	-				-1.0
3,452,047	-				+0.4
3,452,047	-				+0.2
3,452,047	-				+0.6
3,452,071	+				-0.9
3,452,072	-				-0.8
3,452,072	-				-0.6
3,452,072	-				-1.6
3,452,112	+		DZA65_RS15900	0.11	+0.7
3,452,112	+		DZA65_RS15900	0.11	-0.2
3,452,113	-		DZA65_RS15900	0.12	-0.1
3,452,214	-		DZA65_RS15900	0.39	+0.8
3,452,237	+		DZA65_RS15900	0.46	-0.3